Wall clock time and date at job start Mon Mar 30 2020 06:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35955 * 116.99751 * 2 1 4 4 C 1.38655 * 120.06598 * 0.02562 * 3 2 1 5 5 C 1.38179 * 119.97047 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.95389 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.47113 * 174.47173 * 6 5 4 8 8 C 1.50708 * 109.47302 * 294.46709 * 6 5 4 9 9 H 1.08001 * 119.99542 * 5.06825 * 8 6 5 10 10 C 1.37869 * 120.00345 * 185.06327 * 8 6 5 11 11 N 1.31515 * 119.99636 * 7.04656 * 10 8 6 12 12 Si 1.86796 * 120.00371 * 187.04259 * 10 8 6 13 13 H 1.48498 * 109.47273 * 94.94881 * 12 10 8 14 14 H 1.48494 * 109.47416 * 214.95255 * 12 10 8 15 15 H 1.48509 * 109.47004 * 334.95360 * 12 10 8 16 16 C 1.52998 * 109.47200 * 54.46810 * 6 5 4 17 17 N 1.46902 * 109.46970 * 65.08608 * 16 6 5 18 18 C 1.38264 * 120.09380 * 0.25251 * 5 4 3 19 19 C 1.50702 * 119.93676 * 179.74274 * 18 5 4 20 20 C 1.38255 * 120.12561 * 359.49030 * 18 5 4 21 21 C 1.38332 * 120.02845 * 0.51052 * 20 18 5 22 22 F 1.35105 * 120.04766 * 179.72183 * 21 20 18 23 23 H 1.08999 * 109.47026 * 300.00430 * 1 2 3 24 24 H 1.09004 * 109.46674 * 59.99754 * 1 2 3 25 25 H 1.08999 * 109.46787 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.01517 * 359.94998 * 4 3 2 27 27 H 0.97006 * 119.99822 * 179.97438 * 11 10 8 28 28 H 1.08996 * 109.47085 * 305.08787 * 16 6 5 29 29 H 1.09003 * 109.47150 * 185.08707 * 16 6 5 30 30 H 1.00895 * 110.99766 * 56.04994 * 17 16 6 31 31 H 1.00901 * 111.00150 * 179.97438 * 17 16 6 32 32 H 1.09006 * 109.46745 * 84.82500 * 19 18 5 33 33 H 1.08993 * 109.47351 * 204.82466 * 19 18 5 34 34 H 1.09003 * 109.47451 * 324.82586 * 19 18 5 35 35 H 1.08001 * 119.98662 * 180.27126 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2924 2.3751 0.0005 5 6 1.9217 3.6053 0.0011 6 6 1.1020 4.8698 0.0011 7 1 1.7626 5.7311 0.1005 8 6 0.3354 4.9716 -1.2925 9 1 0.3676 4.1601 -2.0045 10 6 -0.4071 6.1004 -1.5669 11 7 -0.3375 7.1433 -0.7686 12 14 -1.5118 6.1487 -3.0724 13 1 -2.8930 5.7644 -2.6855 14 1 -1.5198 7.5223 -3.6366 15 1 -1.0007 5.1977 -4.0921 16 6 0.1207 4.8415 1.1746 17 7 0.8684 4.8652 2.4388 18 6 3.3024 3.6777 -0.0042 19 6 3.9851 5.0212 -0.0095 20 6 4.0580 2.5198 0.0006 21 6 3.4334 1.2856 0.0001 22 9 4.1714 0.1539 -0.0009 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2137 2.3201 0.0001 27 1 -0.8596 7.9377 -0.9619 28 1 -0.4795 3.9330 1.1244 29 1 -0.5330 5.7122 1.1227 30 1 1.4815 5.6654 2.4813 31 1 0.2422 4.8476 3.2297 32 1 4.0708 5.3891 1.0130 33 1 4.9795 4.9218 -0.4444 34 1 3.3986 5.7245 -0.6007 35 1 5.1364 2.5790 0.0009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259999926.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:18 Heat of formation + Delta-G solvation = -71.207699 kcal Electronic energy + Delta-G solvation = -19117.941762 eV Core-core repulsion = 16030.227599 eV Total energy + Delta-G solvation = -3087.714163 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.19395 -39.59829 -37.60906 -34.90209 -32.29615 -31.44498 -30.64238 -27.67625 -27.40380 -25.27313 -23.91092 -22.51130 -20.83199 -19.69081 -17.47995 -16.84055 -16.23288 -15.82710 -15.63445 -14.82580 -14.66262 -14.57583 -13.92725 -13.71757 -13.59205 -13.15605 -12.90690 -12.80861 -12.12902 -11.92985 -11.63552 -11.42448 -11.30784 -11.17520 -11.04684 -10.84066 -10.53008 -10.23024 -9.96219 -9.56425 -9.33015 -8.53748 -8.05081 -7.71705 -7.31492 -6.19837 -4.23620 1.88228 1.95992 3.19846 3.28421 3.32172 3.59120 4.22960 4.37785 4.85313 5.11102 5.26204 5.35266 5.45616 5.60985 5.66560 5.70341 5.81512 5.86128 6.05167 6.14820 6.28141 6.49410 6.56968 6.71413 6.75606 6.89711 6.95359 7.21418 7.28924 7.36503 7.73030 7.79887 7.84805 7.97589 8.22272 8.30855 8.81284 9.41017 10.87526 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.007646 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.380929 B = 3661.009344 C = 4067.154713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.083 3.917 4 C -0.167 4.167 5 C 0.020 3.980 6 C 0.075 3.925 7 H 0.054 0.946 8 C -0.512 4.512 9 H 0.059 0.941 10 C 0.066 3.934 11 N -0.887 5.887 12 Si 0.891 3.109 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.272 1.272 16 C 0.071 3.929 17 N -0.856 5.856 18 C -0.100 4.100 19 C -0.106 4.106 20 C -0.121 4.121 21 C 0.036 3.964 22 F -0.148 7.148 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.094 0.906 26 H 0.133 0.867 27 H 0.262 0.738 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.331 0.669 31 H 0.320 0.680 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 -6.121 3.096 7.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.037 3.963 4 C -0.186 4.186 5 C 0.020 3.980 6 C 0.056 3.944 7 H 0.072 0.928 8 C -0.550 4.550 9 H 0.078 0.922 10 C -0.136 4.136 11 N -0.525 5.525 12 Si 0.718 3.282 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.197 1.197 16 C -0.059 4.059 17 N -0.383 5.383 18 C -0.101 4.101 19 C -0.163 4.163 20 C -0.140 4.140 21 C 0.017 3.983 22 F -0.127 7.127 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.151 0.849 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.142 0.858 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.052 -6.868 2.849 8.038 hybrid contribution -1.371 0.874 -0.632 1.745 sum 1.680 -5.995 2.217 6.608 Atomic orbital electron populations 1.23010 0.78624 1.03157 1.01825 1.86028 1.21220 1.26654 1.89469 1.18968 0.90613 0.85306 1.01376 1.20955 1.00090 0.90767 1.06785 1.20117 0.92618 0.96039 0.89227 1.18020 0.92963 0.89777 0.93634 0.92844 1.21070 1.28872 1.02681 1.02411 0.92233 1.24954 0.96824 0.95195 0.96652 1.69934 1.40640 1.03883 1.38078 0.86587 0.81009 0.77523 0.83057 1.20654 1.21139 1.19686 1.21964 0.96407 0.99682 0.87839 1.59014 1.25244 1.49284 1.04744 1.19522 0.93334 0.94522 1.02677 1.20732 0.99189 0.94249 1.02130 1.20685 0.99822 0.90065 1.03449 1.16749 0.85805 0.82486 1.13310 1.91404 1.76690 1.49622 1.94982 0.92608 0.92457 0.88793 0.84938 0.92806 0.93739 0.93275 0.85759 0.86999 0.91711 0.92837 0.89977 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.32 -5.77 10.36 -19.60 -0.20 -5.97 16 3 C 0.08 1.62 6.69 -39.18 -0.26 1.35 16 4 C -0.17 -3.36 7.81 -39.45 -0.31 -3.67 16 5 C 0.02 0.43 4.46 -104.63 -0.47 -0.04 16 6 C 0.07 1.70 1.69 -92.92 -0.16 1.54 16 7 H 0.05 1.29 5.67 -51.93 -0.29 1.00 16 8 C -0.51 -12.98 8.26 -34.44 -0.28 -13.27 16 9 H 0.06 1.54 7.69 -52.49 -0.40 1.14 16 10 C 0.07 1.70 5.20 -17.82 -0.09 1.60 16 11 N -0.89 -23.45 12.01 55.43 0.67 -22.79 16 12 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 16 C 0.07 1.53 5.90 -3.82 -0.02 1.51 16 17 N -0.86 -15.68 9.34 -10.37 -0.10 -15.78 16 18 C -0.10 -1.92 5.88 -104.60 -0.62 -2.53 16 19 C -0.11 -1.80 9.15 36.01 0.33 -1.47 16 20 C -0.12 -2.19 9.65 -39.54 -0.38 -2.57 16 21 C 0.04 0.70 7.31 -39.30 -0.29 0.41 16 22 F -0.15 -2.83 17.11 2.25 0.04 -2.79 16 23 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 24 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 25 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.13 2.58 5.45 -52.48 -0.29 2.30 16 27 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.04 0.95 6.91 -51.93 -0.36 0.59 16 29 H 0.05 1.18 6.67 -51.93 -0.35 0.83 16 30 H 0.33 5.91 8.99 -39.29 -0.35 5.55 16 31 H 0.32 5.14 9.08 -39.29 -0.36 4.78 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.77 8.05 -51.93 -0.42 0.35 16 34 H 0.08 1.55 6.50 -51.93 -0.34 1.21 16 35 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 294.52 15.07 4.44 4.44 Total: -1.00 -27.62 294.52 -6.09 -33.71 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.35 Total: 9.77 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.56 Total: -15.73 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.57 Total: -38.56 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.20 Total: -5.97 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.62 -6.09 -33.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259999926.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.494 kcal (2) G-P(sol) polarization free energy of solvation -27.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds