Wall clock time and date at job start Mon Mar 30 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35955 * 116.99751 * 2 1 4 4 C 1.38655 * 120.06598 * 0.02562 * 3 2 1 5 5 C 1.38179 * 119.97047 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.95389 * 179.97438 * 5 4 3 7 7 H 1.09006 * 109.47113 * 174.47173 * 6 5 4 8 8 C 1.50708 * 109.47302 * 294.46709 * 6 5 4 9 9 H 1.08001 * 119.99542 * 5.06825 * 8 6 5 10 10 C 1.37869 * 120.00345 * 185.06327 * 8 6 5 11 11 N 1.31515 * 119.99636 * 7.04656 * 10 8 6 12 12 Si 1.86796 * 120.00371 * 187.04259 * 10 8 6 13 13 H 1.48498 * 109.47273 * 94.94881 * 12 10 8 14 14 H 1.48494 * 109.47416 * 214.95255 * 12 10 8 15 15 H 1.48509 * 109.47004 * 334.95360 * 12 10 8 16 16 C 1.52998 * 109.47200 * 54.46810 * 6 5 4 17 17 N 1.46902 * 109.46970 * 65.08608 * 16 6 5 18 18 C 1.38264 * 120.09380 * 0.25251 * 5 4 3 19 19 C 1.50702 * 119.93676 * 179.74274 * 18 5 4 20 20 C 1.38255 * 120.12561 * 359.49030 * 18 5 4 21 21 C 1.38332 * 120.02845 * 0.51052 * 20 18 5 22 22 F 1.35105 * 120.04766 * 179.72183 * 21 20 18 23 23 H 1.08999 * 109.47026 * 300.00430 * 1 2 3 24 24 H 1.09004 * 109.46674 * 59.99754 * 1 2 3 25 25 H 1.08999 * 109.46787 * 179.97438 * 1 2 3 26 26 H 1.08004 * 120.01517 * 359.94998 * 4 3 2 27 27 H 0.97006 * 119.99822 * 179.97438 * 11 10 8 28 28 H 1.08996 * 109.47085 * 305.08787 * 16 6 5 29 29 H 1.09003 * 109.47150 * 185.08707 * 16 6 5 30 30 H 1.00895 * 110.99766 * 56.04994 * 17 16 6 31 31 H 1.00901 * 111.00150 * 179.97438 * 17 16 6 32 32 H 1.09006 * 109.46745 * 84.82500 * 19 18 5 33 33 H 1.08993 * 109.47351 * 204.82466 * 19 18 5 34 34 H 1.09003 * 109.47451 * 324.82586 * 19 18 5 35 35 H 1.08001 * 119.98662 * 180.27126 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2924 2.3751 0.0005 5 6 1.9217 3.6053 0.0011 6 6 1.1020 4.8698 0.0011 7 1 1.7626 5.7311 0.1005 8 6 0.3354 4.9716 -1.2925 9 1 0.3676 4.1601 -2.0045 10 6 -0.4071 6.1004 -1.5669 11 7 -0.3375 7.1433 -0.7686 12 14 -1.5118 6.1487 -3.0724 13 1 -2.8930 5.7644 -2.6855 14 1 -1.5198 7.5223 -3.6366 15 1 -1.0007 5.1977 -4.0921 16 6 0.1207 4.8415 1.1746 17 7 0.8684 4.8652 2.4388 18 6 3.3024 3.6777 -0.0042 19 6 3.9851 5.0212 -0.0095 20 6 4.0580 2.5198 0.0006 21 6 3.4334 1.2856 0.0001 22 9 4.1714 0.1539 -0.0009 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2137 2.3201 0.0001 27 1 -0.8596 7.9377 -0.9619 28 1 -0.4795 3.9330 1.1244 29 1 -0.5330 5.7122 1.1227 30 1 1.4815 5.6654 2.4813 31 1 0.2422 4.8476 3.2297 32 1 4.0708 5.3891 1.0130 33 1 4.9795 4.9218 -0.4444 34 1 3.3986 5.7245 -0.6007 35 1 5.1364 2.5790 0.0009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259999926.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:17 Heat of formation + Delta-G solvation = -88.360379 kcal Electronic energy + Delta-G solvation = -19118.685558 eV Core-core repulsion = 16030.227599 eV Total energy + Delta-G solvation = -3088.457959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.68223 -41.05368 -39.05675 -36.57516 -34.14177 -32.87394 -32.22887 -29.20032 -28.78985 -26.72506 -25.71794 -24.05382 -22.32684 -21.31121 -18.93440 -18.63498 -17.75289 -17.35746 -17.02789 -16.64272 -16.25298 -15.95855 -15.45471 -15.16884 -15.08121 -14.70192 -14.35761 -14.31824 -13.90300 -13.43304 -13.19884 -12.89606 -12.79079 -12.71971 -12.59549 -12.42123 -12.19757 -11.78390 -11.60205 -11.25975 -11.14721 -10.47257 -9.56678 -9.31576 -8.81935 -8.14932 -6.24208 0.38958 0.44978 1.39227 1.43295 1.51535 2.30266 2.40929 2.79473 3.14689 3.37498 3.87263 4.00028 4.11774 4.28067 4.36771 4.37955 4.45480 4.61330 4.68615 4.79426 4.83844 4.97163 5.02779 5.07594 5.25901 5.34174 5.39460 5.52291 5.62801 5.81177 5.89245 6.07645 6.23188 6.42468 6.52639 6.74056 6.92364 7.42476 8.90572 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.007646 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.380929 B = 3661.009344 C = 4067.154713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.331 6.331 3 C 0.079 3.921 4 C -0.175 4.175 5 C 0.000 4.000 6 C 0.080 3.920 7 H 0.037 0.963 8 C -0.523 4.523 9 H 0.048 0.952 10 C 0.026 3.974 11 N -0.910 5.910 12 Si 0.943 3.057 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.085 3.915 17 N -0.847 5.847 18 C -0.109 4.109 19 C -0.101 4.101 20 C -0.111 4.111 21 C 0.024 3.976 22 F -0.147 7.147 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.129 0.871 26 H 0.131 0.869 27 H 0.262 0.738 28 H 0.041 0.959 29 H 0.021 0.979 30 H 0.336 0.664 31 H 0.336 0.664 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.257 -6.933 3.197 8.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.246 6.246 3 C 0.033 3.967 4 C -0.194 4.194 5 C 0.000 4.000 6 C 0.061 3.939 7 H 0.055 0.945 8 C -0.562 4.562 9 H 0.066 0.934 10 C -0.174 4.174 11 N -0.548 5.548 12 Si 0.770 3.230 13 H -0.202 1.202 14 H -0.210 1.210 15 H -0.197 1.197 16 C -0.046 4.046 17 N -0.375 5.375 18 C -0.110 4.110 19 C -0.157 4.157 20 C -0.129 4.129 21 C 0.004 3.996 22 F -0.126 7.126 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.147 0.853 26 H 0.149 0.851 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.591 -7.690 2.962 8.989 hybrid contribution -1.533 1.061 -0.638 1.971 sum 2.058 -6.629 2.324 7.319 Atomic orbital electron populations 1.23307 0.76535 1.05515 1.01886 1.86018 1.23382 1.25945 1.89226 1.19061 0.90997 0.85612 1.01011 1.20926 1.00146 0.90872 1.07409 1.20063 0.93523 0.95413 0.90993 1.17837 0.92782 0.90249 0.92987 0.94539 1.21291 1.29245 1.02250 1.03374 0.93405 1.25549 0.97901 0.95027 0.98911 1.70021 1.41302 1.04188 1.39315 0.85762 0.79608 0.77310 0.80353 1.20159 1.20998 1.19732 1.21654 0.95811 0.98122 0.88999 1.58907 1.25126 1.49439 1.04065 1.19770 0.92837 0.95954 1.02397 1.20700 0.99967 0.92448 1.02611 1.20954 1.01342 0.88952 1.01670 1.17005 0.85967 0.83015 1.13564 1.91402 1.76579 1.49652 1.95001 0.92285 0.92649 0.85334 0.85102 0.92874 0.94032 0.96118 0.85253 0.85284 0.90603 0.89943 0.92531 0.82144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.81 113.37 1.11 1.68 16 2 O -0.33 -11.53 10.36 -93.05 -0.96 -12.49 16 3 C 0.08 3.00 6.69 22.53 0.15 3.15 16 4 C -0.17 -6.96 7.81 22.36 0.17 -6.79 16 5 C 0.00 0.02 4.46 -19.87 -0.09 -0.07 16 6 C 0.08 3.69 1.69 -12.28 -0.02 3.67 16 7 H 0.04 1.80 5.67 -2.38 -0.01 1.79 16 8 C -0.52 -26.89 8.26 25.60 0.21 -26.68 16 9 H 0.05 2.51 7.69 -2.91 -0.02 2.49 16 10 C 0.03 1.35 5.20 84.65 0.44 1.79 16 11 N -0.91 -48.64 12.01 21.44 0.26 -48.38 16 12 Si 0.94 41.48 29.54 68.60 2.03 43.51 16 13 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 16 C 0.08 3.68 5.90 86.30 0.51 4.19 16 17 N -0.85 -30.45 9.34 -186.72 -1.74 -32.20 16 18 C -0.11 -4.04 5.88 -19.85 -0.12 -4.15 16 19 C -0.10 -3.25 9.15 71.24 0.65 -2.60 16 20 C -0.11 -3.73 9.65 22.30 0.22 -3.51 16 21 C 0.02 0.89 7.31 22.45 0.16 1.05 16 22 F -0.15 -5.35 17.11 44.97 0.77 -4.58 16 23 H 0.06 1.49 7.66 -2.39 -0.02 1.47 16 24 H 0.05 1.46 7.66 -2.38 -0.02 1.44 16 25 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.13 5.12 5.45 -2.91 -0.02 5.10 16 27 H 0.26 13.46 8.31 -92.70 -0.77 12.69 16 28 H 0.04 1.79 6.91 -2.39 -0.02 1.77 16 29 H 0.02 1.01 6.67 -2.39 -0.02 0.99 16 30 H 0.34 11.75 8.99 -89.70 -0.81 10.94 16 31 H 0.34 10.40 9.08 -89.69 -0.81 9.58 16 32 H 0.08 2.25 8.14 -2.38 -0.02 2.24 16 33 H 0.08 2.14 8.05 -2.39 -0.02 2.12 16 34 H 0.06 2.12 6.50 -2.39 -0.02 2.11 16 35 H 0.16 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -58.28 294.52 3.26 -55.02 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -0.49 Total: 27.40 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 3.40 Total: -28.27 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -1.49 Total: -80.58 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.96 Total: -12.49 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.77 Total: -4.58 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -58.28 3.26 -55.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259999926.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.341 kcal (2) G-P(sol) polarization free energy of solvation -58.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds