Wall clock time and date at job start Mon Mar 30 2020 06:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35953 * 117.00115 * 2 1 4 4 C 1.38666 * 120.06175 * 359.72155 * 3 2 1 5 5 C 1.38180 * 119.96727 * 179.72158 * 4 3 2 6 6 C 1.50700 * 119.95186 * 180.28006 * 5 4 3 7 7 C 1.38262 * 120.09480 * 0.55232 * 5 4 3 8 8 C 1.50707 * 119.93635 * 179.74083 * 7 5 4 9 9 H 1.09007 * 109.47087 * 324.98402 * 8 7 5 10 10 N 1.46892 * 109.47101 * 204.97948 * 8 7 5 11 11 C 1.52995 * 109.46889 * 84.98018 * 8 7 5 12 12 C 1.50693 * 109.47318 * 185.00115 * 11 8 7 13 13 H 1.08001 * 120.00120 * 359.97438 * 12 11 8 14 14 C 1.37878 * 120.00338 * 180.02562 * 12 11 8 15 15 N 1.31513 * 119.99706 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00340 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47164 * 89.99294 * 16 14 12 18 18 H 1.48494 * 109.47520 * 209.99433 * 16 14 12 19 19 H 1.48500 * 109.46883 * 329.99586 * 16 14 12 20 20 C 1.38254 * 120.12795 * 359.72523 * 7 5 4 21 21 C 1.38335 * 120.02886 * 359.97438 * 20 7 5 22 22 F 1.35092 * 120.04565 * 180.02562 * 21 20 7 23 23 H 1.09002 * 109.47382 * 300.00220 * 1 2 3 24 24 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46926 * 60.00328 * 1 2 3 26 26 H 1.08004 * 120.01341 * 359.97438 * 4 3 2 27 27 H 1.09007 * 109.46784 * 270.27431 * 6 5 4 28 28 H 1.08997 * 109.47330 * 30.27055 * 6 5 4 29 29 H 1.08993 * 109.47321 * 150.28162 * 6 5 4 30 30 H 1.00893 * 111.00406 * 300.00053 * 10 8 7 31 31 H 1.00902 * 110.99592 * 63.95969 * 10 8 7 32 32 H 1.09003 * 109.47534 * 305.00218 * 11 8 7 33 33 H 1.09004 * 109.47231 * 65.00180 * 11 8 7 34 34 H 0.97003 * 119.99543 * 180.02562 * 15 14 12 35 35 H 1.07996 * 119.98472 * 179.97438 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2923 2.3751 -0.0058 5 6 1.9217 3.6053 0.0000 6 6 1.1019 4.8698 0.0000 7 6 3.3024 3.6776 0.0001 8 6 3.9851 5.0212 0.0006 9 1 3.3993 5.7266 -0.5890 10 7 5.3261 4.8893 -0.5842 11 6 4.1034 5.5326 1.4377 12 6 4.6736 6.9274 1.4292 13 1 4.9267 7.4017 0.4925 14 6 4.8732 7.5979 2.6173 15 7 4.5655 7.0202 3.7580 16 14 5.5807 9.3267 2.6069 17 1 4.4744 10.3137 2.5228 18 1 6.3524 9.5534 3.8551 19 1 6.4775 9.4874 1.4343 20 6 4.0580 2.5198 0.0001 21 6 3.4333 1.2855 0.0006 22 9 4.1713 0.1540 0.0011 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 0.2137 2.3200 -0.0108 27 1 0.9043 5.1747 -1.0277 28 1 0.1575 4.6906 0.5137 29 1 1.6510 5.6588 0.5138 30 1 5.8890 4.2402 -0.0553 31 1 5.2723 4.6147 -1.5537 32 1 3.1169 5.5461 1.9010 33 1 4.7620 4.8743 2.0045 34 1 4.7056 7.4921 4.5939 35 1 5.1363 2.5791 -0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260012555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:41 Heat of formation + Delta-G solvation = -67.504176 kcal Electronic energy + Delta-G solvation = -18620.052109 eV Core-core repulsion = 15532.498542 eV Total energy + Delta-G solvation = -3087.553566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.58078 -40.10893 -38.23021 -34.88810 -32.51972 -32.23496 -29.46683 -28.40209 -27.74573 -26.20624 -24.23978 -22.28415 -21.40413 -19.77996 -17.94635 -16.92769 -16.69897 -16.10046 -15.97021 -15.16954 -14.94646 -14.49310 -14.42137 -14.33986 -13.95286 -13.37880 -13.33083 -12.69509 -12.20901 -12.05740 -11.96314 -11.82882 -11.50241 -11.11759 -11.07840 -10.92073 -10.62630 -10.46961 -10.24259 -9.52720 -9.09144 -8.63346 -8.31119 -8.01281 -7.76288 -5.92669 -3.91896 1.28505 1.44066 3.14862 3.37280 3.43934 3.49070 3.70186 4.38112 4.53521 4.74950 4.90655 5.01730 5.05850 5.23082 5.29328 5.33236 5.37883 5.46411 5.61993 5.78870 5.87670 6.04956 6.11772 6.15849 6.33268 6.48671 6.67154 6.80812 6.88438 7.35282 7.50863 7.69337 7.95349 8.07488 8.14377 8.50302 9.14498 9.70463 11.18899 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.032225 B = 0.005232 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.686082 B = 5350.104028 C = 5662.221932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.081 3.919 4 C -0.181 4.181 5 C -0.047 4.047 6 C -0.124 4.124 7 C -0.104 4.104 8 C 0.134 3.866 9 H 0.085 0.915 10 N -0.823 5.823 11 C 0.036 3.964 12 C -0.495 4.495 13 H 0.063 0.937 14 C 0.051 3.949 15 N -0.902 5.902 16 Si 0.892 3.108 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.273 1.273 20 C -0.120 4.120 21 C 0.064 3.936 22 F -0.139 7.139 23 H 0.056 0.944 24 H 0.098 0.902 25 H 0.055 0.945 26 H 0.133 0.867 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.334 0.666 31 H 0.323 0.677 32 H 0.023 0.977 33 H 0.016 0.984 34 H 0.258 0.742 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.405 -10.716 -8.701 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.035 3.965 4 C -0.200 4.200 5 C -0.048 4.048 6 C -0.181 4.181 7 C -0.107 4.107 8 C 0.023 3.977 9 H 0.103 0.897 10 N -0.350 5.350 11 C -0.001 4.001 12 C -0.534 4.534 13 H 0.081 0.919 14 C -0.148 4.148 15 N -0.542 5.542 16 Si 0.720 3.280 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.198 1.198 20 C -0.139 4.139 21 C 0.044 3.956 22 F -0.117 7.117 23 H 0.075 0.925 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.151 0.849 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.149 0.851 31 H 0.134 0.866 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.068 0.932 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.190 -10.123 -8.346 15.466 hybrid contribution -0.018 -0.332 0.094 0.345 sum -8.208 -10.454 -8.252 15.645 Atomic orbital electron populations 1.23048 0.78432 1.03772 1.01431 1.86094 1.21331 1.26131 1.89284 1.18859 0.90678 0.85311 1.01640 1.20975 0.99773 0.91072 1.08136 1.19654 0.93479 0.94676 0.96980 1.20958 0.99276 0.95423 1.02404 1.21119 0.93471 0.97705 0.98389 1.20830 0.87454 0.88718 1.00742 0.89747 1.58817 1.13905 1.57213 1.05096 1.19159 0.97378 0.96360 0.87193 1.21148 1.40623 0.98982 0.92616 0.91894 1.25017 0.96100 0.98010 0.95709 1.69973 1.49318 1.37547 0.97372 0.86594 0.79126 0.84946 0.77321 1.20942 1.21537 1.19826 1.20816 1.00944 0.89826 1.02341 1.16881 0.85858 0.82748 1.10133 1.91457 1.76543 1.49240 1.94500 0.92529 0.88326 0.92682 0.84899 0.91141 0.91787 0.88884 0.85147 0.86560 0.95865 0.96526 0.93221 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.48 10.36 -19.59 -0.20 -4.68 16 3 C 0.08 1.25 6.69 -39.18 -0.26 0.99 16 4 C -0.18 -2.57 8.69 -39.44 -0.34 -2.91 16 5 C -0.05 -0.74 5.88 -104.63 -0.62 -1.35 16 6 C -0.12 -1.75 9.21 36.01 0.33 -1.42 16 7 C -0.10 -1.80 5.05 -104.60 -0.53 -2.32 16 8 C 0.13 2.59 2.23 -68.87 -0.15 2.44 16 9 H 0.08 1.62 6.98 -51.93 -0.36 1.26 16 10 N -0.82 -14.74 8.54 -5.66 -0.05 -14.79 16 11 C 0.04 0.89 4.35 -27.89 -0.12 0.77 16 12 C -0.50 -13.55 8.84 -34.44 -0.30 -13.86 16 13 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 14 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 15 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 20 C -0.12 -1.99 9.24 -39.54 -0.37 -2.36 16 21 C 0.06 1.06 7.31 -39.30 -0.29 0.78 16 22 F -0.14 -2.37 17.11 2.25 0.04 -2.34 16 23 H 0.06 0.48 7.68 -51.93 -0.40 0.08 16 24 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 26 H 0.13 1.49 6.30 -52.48 -0.33 1.16 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 29 H 0.09 1.55 5.47 -51.93 -0.28 1.27 16 30 H 0.33 5.79 7.20 -39.30 -0.28 5.51 16 31 H 0.32 4.85 9.06 -39.29 -0.36 4.50 16 32 H 0.02 0.60 7.02 -51.93 -0.36 0.24 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.14 2.11 6.28 -52.49 -0.33 1.78 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -31.27 295.14 -6.14 -37.41 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.34 Total: 6.00 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -1.75 Total: -16.63 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.69 Total: -40.91 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.20 Total: -4.68 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.27 -6.14 -37.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.090 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds