Wall clock time and date at job start Mon Mar 30 2020 06:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35953 * 117.00115 * 2 1 4 4 C 1.38666 * 120.06175 * 359.72155 * 3 2 1 5 5 C 1.38180 * 119.96727 * 179.72158 * 4 3 2 6 6 C 1.50700 * 119.95186 * 180.28006 * 5 4 3 7 7 C 1.38262 * 120.09480 * 0.55232 * 5 4 3 8 8 C 1.50707 * 119.93635 * 179.74083 * 7 5 4 9 9 H 1.09007 * 109.47087 * 324.98402 * 8 7 5 10 10 N 1.46892 * 109.47101 * 204.97948 * 8 7 5 11 11 C 1.52995 * 109.46889 * 84.98018 * 8 7 5 12 12 C 1.50693 * 109.47318 * 185.00115 * 11 8 7 13 13 H 1.08001 * 120.00120 * 359.97438 * 12 11 8 14 14 C 1.37878 * 120.00338 * 180.02562 * 12 11 8 15 15 N 1.31513 * 119.99706 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00340 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47164 * 89.99294 * 16 14 12 18 18 H 1.48494 * 109.47520 * 209.99433 * 16 14 12 19 19 H 1.48500 * 109.46883 * 329.99586 * 16 14 12 20 20 C 1.38254 * 120.12795 * 359.72523 * 7 5 4 21 21 C 1.38335 * 120.02886 * 359.97438 * 20 7 5 22 22 F 1.35092 * 120.04565 * 180.02562 * 21 20 7 23 23 H 1.09002 * 109.47382 * 300.00220 * 1 2 3 24 24 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46926 * 60.00328 * 1 2 3 26 26 H 1.08004 * 120.01341 * 359.97438 * 4 3 2 27 27 H 1.09007 * 109.46784 * 270.27431 * 6 5 4 28 28 H 1.08997 * 109.47330 * 30.27055 * 6 5 4 29 29 H 1.08993 * 109.47321 * 150.28162 * 6 5 4 30 30 H 1.00893 * 111.00406 * 300.00053 * 10 8 7 31 31 H 1.00902 * 110.99592 * 63.95969 * 10 8 7 32 32 H 1.09003 * 109.47534 * 305.00218 * 11 8 7 33 33 H 1.09004 * 109.47231 * 65.00180 * 11 8 7 34 34 H 0.97003 * 119.99543 * 180.02562 * 15 14 12 35 35 H 1.07996 * 119.98472 * 179.97438 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2923 2.3751 -0.0058 5 6 1.9217 3.6053 0.0000 6 6 1.1019 4.8698 0.0000 7 6 3.3024 3.6776 0.0001 8 6 3.9851 5.0212 0.0006 9 1 3.3993 5.7266 -0.5890 10 7 5.3261 4.8893 -0.5842 11 6 4.1034 5.5326 1.4377 12 6 4.6736 6.9274 1.4292 13 1 4.9267 7.4017 0.4925 14 6 4.8732 7.5979 2.6173 15 7 4.5655 7.0202 3.7580 16 14 5.5807 9.3267 2.6069 17 1 4.4744 10.3137 2.5228 18 1 6.3524 9.5534 3.8551 19 1 6.4775 9.4874 1.4343 20 6 4.0580 2.5198 0.0001 21 6 3.4333 1.2855 0.0006 22 9 4.1713 0.1540 0.0011 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 0.2137 2.3200 -0.0108 27 1 0.9043 5.1747 -1.0277 28 1 0.1575 4.6906 0.5137 29 1 1.6510 5.6588 0.5138 30 1 5.8890 4.2402 -0.0553 31 1 5.2723 4.6147 -1.5537 32 1 3.1169 5.5461 1.9010 33 1 4.7620 4.8743 2.0045 34 1 4.7056 7.4921 4.5939 35 1 5.1363 2.5791 -0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260012555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:41 Heat of formation + Delta-G solvation = -88.276047 kcal Electronic energy + Delta-G solvation = -18620.952845 eV Core-core repulsion = 15532.498542 eV Total energy + Delta-G solvation = -3088.454302 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.86906 -41.28236 -39.42316 -36.41598 -34.46031 -33.51628 -30.70234 -30.19907 -28.73239 -27.43022 -25.93537 -23.76977 -22.69438 -21.26994 -19.10282 -18.49533 -18.13003 -17.52822 -17.18888 -16.76495 -16.26411 -16.06850 -15.80169 -15.51534 -15.11614 -14.82327 -14.55824 -14.14070 -13.94440 -13.36635 -13.18270 -12.97497 -12.92369 -12.72407 -12.54323 -12.28575 -12.24532 -12.02392 -11.95147 -11.25833 -11.16015 -10.48174 -9.84987 -9.46807 -9.02670 -8.09014 -6.15034 0.06226 0.19901 1.44729 1.46194 1.57537 2.16925 2.44413 2.51469 3.18072 3.24675 3.62969 3.72447 3.90172 4.06275 4.09607 4.34256 4.38028 4.43217 4.56012 4.69818 4.72441 4.83588 4.85498 4.89266 4.93725 5.12845 5.29803 5.50082 5.56363 5.63594 5.72764 5.90262 6.27303 6.31869 6.50967 6.80278 6.99585 7.51752 9.02608 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.032225 B = 0.005232 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.686082 B = 5350.104028 C = 5662.221932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.086 3.914 4 C -0.174 4.174 5 C -0.049 4.049 6 C -0.122 4.122 7 C -0.126 4.126 8 C 0.151 3.849 9 H 0.086 0.914 10 N -0.832 5.832 11 C 0.045 3.955 12 C -0.503 4.503 13 H 0.062 0.938 14 C -0.004 4.004 15 N -0.940 5.940 16 Si 0.958 3.042 17 H -0.273 1.273 18 H -0.289 1.289 19 H -0.267 1.267 20 C -0.121 4.121 21 C 0.038 3.962 22 F -0.146 7.146 23 H 0.066 0.934 24 H 0.123 0.877 25 H 0.072 0.928 26 H 0.169 0.831 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.336 0.664 31 H 0.342 0.658 32 H 0.003 0.997 33 H -0.017 1.017 34 H 0.259 0.741 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.800 -10.711 -9.862 17.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.040 3.960 4 C -0.192 4.192 5 C -0.050 4.050 6 C -0.178 4.178 7 C -0.128 4.128 8 C 0.040 3.960 9 H 0.104 0.896 10 N -0.361 5.361 11 C 0.008 3.992 12 C -0.542 4.542 13 H 0.080 0.920 14 C -0.200 4.200 15 N -0.581 5.581 16 Si 0.784 3.216 17 H -0.199 1.199 18 H -0.215 1.215 19 H -0.192 1.192 20 C -0.140 4.140 21 C 0.019 3.981 22 F -0.125 7.125 23 H 0.085 0.915 24 H 0.141 0.859 25 H 0.091 0.909 26 H 0.186 0.814 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.021 0.979 33 H 0.001 0.999 34 H 0.067 0.933 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.596 -10.127 -9.536 16.898 hybrid contribution 0.332 -0.435 0.441 0.703 sum -9.263 -10.562 -9.095 16.735 Atomic orbital electron populations 1.23449 0.75692 1.05962 1.02718 1.86091 1.24165 1.25497 1.88851 1.19003 0.90408 0.86377 1.00202 1.21246 1.01398 0.89742 1.06828 1.19924 0.93036 0.96053 0.96011 1.20958 0.99460 0.93650 1.03714 1.20892 0.94394 0.96563 1.00992 1.20353 0.88412 0.89993 0.97284 0.89623 1.58723 1.13335 1.57703 1.06352 1.18954 0.95090 0.94853 0.90284 1.21496 1.39989 1.00175 0.92492 0.91963 1.25864 0.96623 1.02114 0.95414 1.70106 1.50775 1.39285 0.97976 0.85545 0.78570 0.80207 0.77274 1.19873 1.21536 1.19150 1.20847 1.01246 0.89857 1.02039 1.17084 0.86790 0.82534 1.11739 1.91428 1.76843 1.49471 1.94717 0.91550 0.85924 0.90933 0.81400 0.88865 0.89548 0.91994 0.84951 0.84470 0.97870 0.99868 0.93263 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.74 10.36 -93.02 -0.96 -9.71 16 3 C 0.09 2.54 6.69 22.53 0.15 2.69 16 4 C -0.17 -4.50 8.69 22.36 0.19 -4.30 16 5 C -0.05 -1.48 5.88 -19.87 -0.12 -1.60 16 6 C -0.12 -3.21 9.21 71.24 0.66 -2.56 16 7 C -0.13 -4.32 5.05 -19.85 -0.10 -4.42 16 8 C 0.15 5.89 2.23 44.17 0.10 5.99 16 9 H 0.09 3.28 6.98 -2.38 -0.02 3.26 16 10 N -0.83 -29.77 8.54 -171.81 -1.47 -31.24 16 11 C 0.05 2.31 4.35 29.84 0.13 2.44 16 12 C -0.50 -27.92 8.84 25.60 0.23 -27.69 16 13 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 14 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 15 N -0.94 -57.12 13.29 21.45 0.28 -56.83 16 16 Si 0.96 44.74 29.54 68.60 2.03 46.76 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 C -0.12 -4.03 9.24 22.30 0.21 -3.82 16 21 C 0.04 1.27 7.31 22.45 0.16 1.43 16 22 F -0.15 -5.00 17.11 44.97 0.77 -4.23 16 23 H 0.07 0.89 7.68 -2.39 -0.02 0.87 16 24 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 0.86 7.65 -2.38 -0.02 0.84 16 26 H 0.17 3.07 6.30 -2.91 -0.02 3.05 16 27 H 0.09 2.02 8.14 -2.38 -0.02 2.01 16 28 H 0.09 1.87 8.09 -2.39 -0.02 1.85 16 29 H 0.06 2.05 5.47 -2.39 -0.01 2.04 16 30 H 0.34 11.82 7.20 -89.70 -0.65 11.18 16 31 H 0.34 10.03 9.06 -89.69 -0.81 9.21 16 32 H 0.00 0.17 7.02 -2.39 -0.02 0.15 16 33 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 34 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.14 4.42 6.28 -2.91 -0.02 4.40 16 Total: -1.00 -67.98 295.14 3.50 -64.47 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.33 Total: 21.02 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 3.18 Total: -30.25 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -1.18 Total: -88.07 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.96 Total: -9.71 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.77 Total: -4.23 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -67.98 3.50 -64.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.802 kcal (2) G-P(sol) polarization free energy of solvation -67.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds