Wall clock time and date at job start Mon Mar 30 2020 06:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38297 * 119.98747 * 2 1 4 4 C 1.38212 * 120.12934 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.95116 * 179.97438 * 4 3 2 6 6 H 1.09009 * 109.47001 * 174.40635 * 5 4 3 7 7 C 1.50704 * 109.47398 * 54.40860 * 5 4 3 8 8 H 1.07998 * 119.99564 * 355.89800 * 7 5 4 9 9 C 1.37876 * 120.00001 * 175.89816 * 7 5 4 10 10 N 1.31517 * 120.00207 * 353.20415 * 9 7 5 11 11 Si 1.86800 * 119.99833 * 173.20883 * 9 7 5 12 12 H 1.48506 * 109.47087 * 59.99758 * 11 9 7 13 13 H 1.48491 * 109.47189 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46939 * 299.99965 * 11 9 7 15 15 C 1.53001 * 109.47259 * 294.40378 * 5 4 3 16 16 N 1.46894 * 109.47638 * 297.40662 * 15 5 4 17 17 C 1.38222 * 120.09738 * 0.27382 * 4 3 2 18 18 C 1.50696 * 120.01704 * 179.70018 * 17 4 3 19 19 C 1.38622 * 119.96302 * 359.45518 * 17 4 3 20 20 O 1.35963 * 120.06019 * 180.27359 * 19 17 4 21 21 C 1.38288 * 119.98417 * 180.02562 * 2 1 3 22 22 F 1.35095 * 120.05061 * 0.02562 * 21 2 1 23 23 H 1.09001 * 109.47051 * 90.00296 * 1 2 3 24 24 H 1.09000 * 109.47177 * 209.99944 * 1 2 3 25 25 H 1.09000 * 109.47398 * 330.00148 * 1 2 3 26 26 H 1.08006 * 119.93140 * 359.97438 * 3 2 1 27 27 H 0.96999 * 120.00093 * 180.02562 * 10 9 7 28 28 H 1.09004 * 109.46805 * 57.41122 * 15 5 4 29 29 H 1.09006 * 109.47345 * 177.40269 * 15 5 4 30 30 H 1.00899 * 111.00642 * 174.62828 * 16 15 5 31 31 H 1.00907 * 111.00027 * 298.58584 * 16 15 5 32 32 H 1.09000 * 109.46636 * 85.62198 * 18 17 4 33 33 H 1.09007 * 109.46841 * 205.61431 * 18 17 4 34 34 H 1.08992 * 109.47610 * 325.61655 * 18 17 4 35 35 H 0.96698 * 113.99831 * 270.26855 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1978 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.3295 2.5089 -0.0011 6 1 5.3977 2.3157 0.0987 7 6 3.8622 3.3561 1.1543 8 1 3.0533 3.0136 1.7826 9 6 4.4673 4.5685 1.4091 10 7 5.5361 4.9255 0.7310 11 14 3.7690 5.7041 2.7177 12 1 3.7832 5.0126 4.0319 13 1 4.5959 6.9349 2.7975 14 1 2.3730 6.0670 2.3644 15 6 4.0654 3.2474 -1.3148 16 7 4.5771 2.4492 -2.4368 17 6 4.2764 0.0071 -0.0068 18 6 5.7834 0.0130 -0.0142 19 6 3.5876 -1.1958 -0.0011 20 8 4.2704 -2.3716 -0.0016 21 6 2.1981 -1.1978 -0.0005 22 9 1.5233 -2.3682 -0.0016 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6569 2.1324 -0.0004 27 1 5.9620 5.7783 0.9106 28 1 2.9930 3.3999 -1.4366 29 1 4.5699 4.2135 -1.2963 30 1 4.3378 2.8728 -3.3208 31 1 5.5740 2.3135 -2.3590 32 1 6.1513 0.0904 1.0089 33 1 6.1481 -0.9113 -0.4625 34 1 6.1406 0.8638 -0.5942 35 1 4.4675 -2.7115 -0.8852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260026905.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:39 Heat of formation + Delta-G solvation = -83.226922 kcal Electronic energy + Delta-G solvation = -19144.381611 eV Core-core repulsion = 16056.146255 eV Total energy + Delta-G solvation = -3088.235356 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.35039 -39.40602 -36.85913 -35.04761 -32.72009 -32.26261 -29.97466 -28.88196 -27.08550 -24.44910 -23.93828 -22.42438 -20.87502 -19.26343 -17.58515 -16.99630 -16.29985 -15.93163 -15.33896 -14.88784 -14.70449 -14.15734 -13.62645 -13.46379 -13.13565 -13.06341 -12.72069 -12.53216 -12.35924 -12.08708 -11.91473 -11.62785 -11.31403 -11.05866 -11.00015 -10.65682 -10.45526 -10.23775 -10.00151 -9.50785 -9.28797 -8.49304 -7.92833 -7.76564 -7.55369 -6.17032 -4.20093 1.75302 1.84579 3.24789 3.29776 3.33098 4.12194 4.33616 4.50462 4.86333 5.14325 5.22509 5.45458 5.60088 5.66946 5.74753 5.86661 5.99190 6.12238 6.18954 6.26292 6.32703 6.52909 6.70332 6.71883 6.77268 6.92868 6.98066 7.18688 7.32194 7.45545 7.77246 7.83078 7.94636 8.02934 8.22430 8.32415 8.83779 9.44150 10.90755 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022290 B = 0.007382 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.844351 B = 3792.054218 C = 4227.091177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.119 4.119 3 C -0.090 4.090 4 C -0.001 4.001 5 C 0.078 3.922 6 H 0.050 0.950 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.066 3.934 10 N -0.889 5.889 11 Si 0.892 3.108 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.071 3.929 16 N -0.856 5.856 17 C -0.088 4.088 18 C -0.101 4.101 19 C 0.065 3.935 20 O -0.490 6.490 21 C 0.041 3.959 22 F -0.147 7.147 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.131 0.869 27 H 0.263 0.737 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.321 0.679 31 H 0.329 0.671 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.359 -7.126 -4.742 9.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.120 4.120 3 C -0.108 4.108 4 C -0.001 4.001 5 C 0.059 3.941 6 H 0.068 0.932 7 C -0.552 4.552 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.527 5.527 11 Si 0.719 3.281 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.201 1.201 15 C -0.059 4.059 16 N -0.383 5.383 17 C -0.089 4.089 18 C -0.157 4.157 19 C 0.020 3.980 20 O -0.299 6.299 21 C 0.022 3.978 22 F -0.126 7.126 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.149 0.851 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.770 -7.534 -3.846 9.261 hybrid contribution 0.110 1.255 -0.013 1.260 sum -3.659 -6.280 -3.859 8.229 Atomic orbital electron populations 1.20632 0.90964 1.02656 1.02080 1.19742 0.96320 0.91786 1.04163 1.20822 0.94228 0.96242 0.99488 1.20208 0.93172 0.95685 0.91056 1.17966 0.96229 0.87061 0.92823 0.93173 1.21078 1.18550 1.03042 1.12529 0.92146 1.24957 0.94454 0.98035 0.96205 1.69914 1.18884 1.22337 1.41548 0.86653 0.79174 0.80095 0.82170 1.20122 1.21281 1.20109 1.21964 0.98015 0.96127 0.89802 1.59013 1.18703 1.55621 1.04992 1.19896 0.96709 0.91093 1.01191 1.20614 0.90798 1.01913 1.02371 1.18154 0.87719 0.85822 1.06344 1.84857 1.75969 1.36249 1.32784 1.17688 0.89107 0.81018 1.10011 1.91378 1.80291 1.46326 1.94601 0.91463 0.91931 0.91171 0.85147 0.92770 0.93491 0.93047 0.86947 0.85969 0.91422 0.92638 0.90484 0.76602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.83 36.01 0.35 -1.19 16 2 C -0.12 -2.15 5.88 -104.58 -0.62 -2.76 16 3 C -0.09 -1.77 8.16 -39.57 -0.32 -2.09 16 4 C 0.00 -0.02 4.43 -104.64 -0.46 -0.48 16 5 C 0.08 1.78 1.76 -92.92 -0.16 1.62 16 6 H 0.05 1.23 5.68 -51.92 -0.29 0.94 16 7 C -0.51 -13.12 8.06 -34.44 -0.28 -13.40 16 8 H 0.06 1.55 7.38 -52.49 -0.39 1.17 16 9 C 0.07 1.70 5.22 -17.82 -0.09 1.61 16 10 N -0.89 -23.71 11.93 55.43 0.66 -23.05 16 11 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 C 0.07 1.52 5.94 -3.83 -0.02 1.49 16 16 N -0.86 -15.27 9.25 -10.37 -0.10 -15.37 16 17 C -0.09 -1.72 5.89 -104.49 -0.62 -2.33 16 18 C -0.10 -1.76 9.00 36.00 0.32 -1.43 16 19 C 0.06 1.21 6.68 -39.18 -0.26 0.94 16 20 O -0.49 -8.00 12.35 -19.62 -0.24 -8.24 16 21 C 0.04 0.77 7.25 -39.30 -0.28 0.49 16 22 F -0.15 -2.66 16.32 2.25 0.04 -2.63 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.86 7.64 -51.93 -0.40 0.47 16 25 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 26 H 0.13 2.53 7.73 -52.48 -0.41 2.12 16 27 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.05 1.01 7.65 -51.93 -0.40 0.61 16 29 H 0.05 1.23 6.62 -51.93 -0.34 0.88 16 30 H 0.32 5.01 9.08 -39.29 -0.36 4.65 16 31 H 0.33 5.68 8.87 -39.29 -0.35 5.34 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.83 7.41 -51.92 -0.38 0.44 16 34 H 0.08 1.37 6.29 -51.93 -0.33 1.04 16 35 H 0.38 4.36 9.06 45.56 0.41 4.77 16 LS Contribution 294.90 15.07 4.44 4.44 Total: -1.00 -28.01 294.90 -6.29 -34.30 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -3.63 Total: 12.77 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -2.44 Total: -17.53 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.57 Total: -38.42 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.24 Total: -8.24 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.01 -6.29 -34.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260026905.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.929 kcal (2) G-P(sol) polarization free energy of solvation -28.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds