Wall clock time and date at job start Mon Mar 30 2020 06:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38297 * 119.98747 * 2 1 4 4 C 1.38212 * 120.12934 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.95116 * 179.97438 * 4 3 2 6 6 H 1.09009 * 109.47001 * 174.40635 * 5 4 3 7 7 C 1.50704 * 109.47398 * 54.40860 * 5 4 3 8 8 H 1.07998 * 119.99564 * 355.89800 * 7 5 4 9 9 C 1.37876 * 120.00001 * 175.89816 * 7 5 4 10 10 N 1.31517 * 120.00207 * 353.20415 * 9 7 5 11 11 Si 1.86800 * 119.99833 * 173.20883 * 9 7 5 12 12 H 1.48506 * 109.47087 * 59.99758 * 11 9 7 13 13 H 1.48491 * 109.47189 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46939 * 299.99965 * 11 9 7 15 15 C 1.53001 * 109.47259 * 294.40378 * 5 4 3 16 16 N 1.46894 * 109.47638 * 297.40662 * 15 5 4 17 17 C 1.38222 * 120.09738 * 0.27382 * 4 3 2 18 18 C 1.50696 * 120.01704 * 179.70018 * 17 4 3 19 19 C 1.38622 * 119.96302 * 359.45518 * 17 4 3 20 20 O 1.35963 * 120.06019 * 180.27359 * 19 17 4 21 21 C 1.38288 * 119.98417 * 180.02562 * 2 1 3 22 22 F 1.35095 * 120.05061 * 0.02562 * 21 2 1 23 23 H 1.09001 * 109.47051 * 90.00296 * 1 2 3 24 24 H 1.09000 * 109.47177 * 209.99944 * 1 2 3 25 25 H 1.09000 * 109.47398 * 330.00148 * 1 2 3 26 26 H 1.08006 * 119.93140 * 359.97438 * 3 2 1 27 27 H 0.96999 * 120.00093 * 180.02562 * 10 9 7 28 28 H 1.09004 * 109.46805 * 57.41122 * 15 5 4 29 29 H 1.09006 * 109.47345 * 177.40269 * 15 5 4 30 30 H 1.00899 * 111.00642 * 174.62828 * 16 15 5 31 31 H 1.00907 * 111.00027 * 298.58584 * 16 15 5 32 32 H 1.09000 * 109.46636 * 85.62198 * 18 17 4 33 33 H 1.09007 * 109.46841 * 205.61431 * 18 17 4 34 34 H 1.08992 * 109.47610 * 325.61655 * 18 17 4 35 35 H 0.96698 * 113.99831 * 270.26855 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1978 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.3295 2.5089 -0.0011 6 1 5.3977 2.3157 0.0987 7 6 3.8622 3.3561 1.1543 8 1 3.0533 3.0136 1.7826 9 6 4.4673 4.5685 1.4091 10 7 5.5361 4.9255 0.7310 11 14 3.7690 5.7041 2.7177 12 1 3.7832 5.0126 4.0319 13 1 4.5959 6.9349 2.7975 14 1 2.3730 6.0670 2.3644 15 6 4.0654 3.2474 -1.3148 16 7 4.5771 2.4492 -2.4368 17 6 4.2764 0.0071 -0.0068 18 6 5.7834 0.0130 -0.0142 19 6 3.5876 -1.1958 -0.0011 20 8 4.2704 -2.3716 -0.0016 21 6 2.1981 -1.1978 -0.0005 22 9 1.5233 -2.3682 -0.0016 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6569 2.1324 -0.0004 27 1 5.9620 5.7783 0.9106 28 1 2.9930 3.3999 -1.4366 29 1 4.5699 4.2135 -1.2963 30 1 4.3378 2.8728 -3.3208 31 1 5.5740 2.3135 -2.3590 32 1 6.1513 0.0904 1.0089 33 1 6.1481 -0.9113 -0.4625 34 1 6.1406 0.8638 -0.5942 35 1 4.4675 -2.7115 -0.8852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260026905.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:38 Heat of formation + Delta-G solvation = -102.109290 kcal Electronic energy + Delta-G solvation = -19145.200412 eV Core-core repulsion = 16056.146255 eV Total energy + Delta-G solvation = -3089.054157 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.77490 -40.86786 -38.28236 -36.64111 -34.29963 -33.96362 -31.56667 -30.18972 -28.75088 -25.97597 -25.61927 -23.97344 -22.38715 -20.83727 -18.97154 -18.72987 -17.76448 -17.48316 -16.87620 -16.57781 -16.34160 -15.61751 -15.25425 -14.89497 -14.68414 -14.40556 -14.02783 -13.94900 -13.82792 -13.78967 -13.38565 -13.07718 -12.92082 -12.81669 -12.52059 -12.31333 -12.05407 -11.75959 -11.66227 -11.21377 -11.06679 -10.43645 -9.38262 -9.30453 -9.08830 -8.13722 -6.22005 0.30583 0.36529 1.42979 1.44323 1.50933 2.42325 2.68991 3.11341 3.16838 3.47566 3.87308 4.01718 4.15171 4.26732 4.34360 4.57922 4.76036 4.77520 4.80876 4.85894 4.88522 5.07359 5.09929 5.24105 5.29736 5.41204 5.42976 5.56458 5.61885 5.82697 5.98840 6.11485 6.27071 6.53874 6.75804 6.80908 6.94514 7.44319 8.92337 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022290 B = 0.007382 C = 0.006622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.844351 B = 3792.054218 C = 4227.091177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.114 4.114 3 C -0.103 4.103 4 C -0.018 4.018 5 C 0.082 3.918 6 H 0.029 0.971 7 C -0.526 4.526 8 H 0.052 0.948 9 C 0.024 3.976 10 N -0.912 5.912 11 Si 0.944 3.056 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.269 1.269 15 C 0.086 3.914 16 N -0.846 5.846 17 C -0.102 4.102 18 C -0.096 4.096 19 C 0.072 3.928 20 O -0.493 6.493 21 C 0.031 3.969 22 F -0.143 7.143 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.127 0.873 27 H 0.262 0.738 28 H 0.043 0.957 29 H 0.022 0.978 30 H 0.336 0.664 31 H 0.334 0.666 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 -8.127 -5.046 10.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.115 4.115 3 C -0.121 4.121 4 C -0.018 4.018 5 C 0.064 3.936 6 H 0.047 0.953 7 C -0.565 4.565 8 H 0.071 0.929 9 C -0.176 4.176 10 N -0.551 5.551 11 Si 0.770 3.230 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.194 1.194 15 C -0.044 4.044 16 N -0.374 5.374 17 C -0.103 4.103 18 C -0.152 4.152 19 C 0.026 3.974 20 O -0.305 6.305 21 C 0.011 3.989 22 F -0.122 7.122 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.145 0.855 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -4.672 -8.552 -4.179 10.603 hybrid contribution 0.396 1.460 0.050 1.513 sum -4.276 -7.092 -4.129 9.254 Atomic orbital electron populations 1.20720 0.88415 1.03594 1.03512 1.20023 0.98181 0.90883 1.02376 1.20824 0.93880 0.96877 1.00543 1.20098 0.93769 0.95228 0.92729 1.17783 0.95106 0.88072 0.92670 0.95295 1.21367 1.18189 1.03629 1.13286 0.92939 1.25582 0.94764 0.99268 0.97991 1.70013 1.19755 1.22547 1.42751 0.85818 0.78785 0.78426 0.79925 1.20217 1.21103 1.19432 1.21618 0.97413 0.94876 0.90540 1.58889 1.19049 1.54690 1.04769 1.20029 0.97539 0.91023 1.01693 1.20576 0.89852 1.02925 1.01848 1.18146 0.87880 0.86177 1.05149 1.84792 1.75624 1.35187 1.34913 1.17829 0.89336 0.81376 1.10325 1.91386 1.80180 1.46032 1.94602 0.89672 0.91104 0.90135 0.85514 0.92937 0.93871 0.95962 0.85200 0.85404 0.92420 0.90000 0.91319 0.73837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.80 9.83 71.24 0.70 -2.10 16 2 C -0.11 -3.91 5.88 -19.84 -0.12 -4.02 16 3 C -0.10 -3.99 8.16 22.28 0.18 -3.81 16 4 C -0.02 -0.74 4.43 -19.87 -0.09 -0.83 16 5 C 0.08 3.83 1.76 -12.28 -0.02 3.81 16 6 H 0.03 1.46 5.68 -2.38 -0.01 1.45 16 7 C -0.53 -27.26 8.06 25.60 0.21 -27.06 16 8 H 0.05 2.74 7.38 -2.91 -0.02 2.71 16 9 C 0.02 1.24 5.22 84.65 0.44 1.68 16 10 N -0.91 -49.42 11.93 21.45 0.26 -49.17 16 11 Si 0.94 41.85 29.54 68.60 2.03 43.88 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 13 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 15 C 0.09 3.73 5.94 86.30 0.51 4.24 16 16 N -0.85 -29.66 9.25 -186.72 -1.73 -31.39 16 17 C -0.10 -3.89 5.89 -19.78 -0.12 -4.00 16 18 C -0.10 -3.28 9.00 71.23 0.64 -2.63 16 19 C 0.07 2.55 6.68 22.53 0.15 2.70 16 20 O -0.49 -14.83 12.35 -93.13 -1.15 -15.98 16 21 C 0.03 1.09 7.25 22.45 0.16 1.25 16 22 F -0.14 -4.83 16.32 44.97 0.73 -4.09 16 23 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.07 1.76 7.64 -2.39 -0.02 1.74 16 25 H 0.08 1.96 8.09 -2.39 -0.02 1.94 16 26 H 0.13 4.90 7.73 -2.91 -0.02 4.88 16 27 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 28 H 0.04 1.86 7.65 -2.39 -0.02 1.84 16 29 H 0.02 1.08 6.62 -2.38 -0.02 1.07 16 30 H 0.34 10.11 9.08 -89.69 -0.81 9.30 16 31 H 0.33 11.39 8.87 -89.69 -0.80 10.60 16 32 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.08 2.29 7.41 -2.38 -0.02 2.28 16 34 H 0.07 2.44 6.29 -2.39 -0.02 2.43 16 35 H 0.40 8.00 9.06 -74.06 -0.67 7.33 16 Total: -1.00 -58.88 294.90 1.66 -57.22 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: -1.13 Total: 30.31 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 2.65 Total: -30.78 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -1.47 Total: -80.56 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -1.15 Total: -15.98 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.73 Total: -4.09 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -58.88 1.66 -57.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260026905.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.889 kcal (2) G-P(sol) polarization free energy of solvation -58.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds