Wall clock time and date at job start Mon Mar 30 2020 07:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35963 * 117.00171 * 2 1 4 4 C 1.38658 * 120.06277 * 89.99816 * 3 2 1 5 5 C 1.50703 * 120.01503 * 359.97438 * 4 3 2 6 6 C 1.38178 * 119.96832 * 180.25603 * 4 3 2 7 7 C 1.38259 * 120.09472 * 359.45226 * 6 4 3 8 8 C 1.50701 * 119.93854 * 180.29459 * 7 6 4 9 9 H 1.09003 * 109.46965 * 340.25895 * 8 7 6 10 10 N 1.46894 * 109.47735 * 220.25185 * 8 7 6 11 11 C 1.53007 * 109.47020 * 100.25281 * 8 7 6 12 12 C 1.50699 * 109.47079 * 185.00200 * 11 8 7 13 13 H 1.07999 * 120.00277 * 0.02562 * 12 11 8 14 14 C 1.37878 * 119.99663 * 179.97438 * 12 11 8 15 15 N 1.31515 * 119.99770 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00330 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47406 * 89.99569 * 16 14 12 18 18 H 1.48502 * 109.47062 * 210.00072 * 16 14 12 19 19 H 1.48502 * 109.46820 * 329.99289 * 16 14 12 20 20 C 1.38256 * 120.12740 * 0.54878 * 7 6 4 21 21 C 1.38335 * 120.02698 * 359.72656 * 20 7 6 22 22 F 1.35097 * 120.04680 * 180.02562 * 21 20 7 23 23 H 1.08997 * 109.47315 * 299.99671 * 1 2 3 24 24 H 1.09001 * 109.47374 * 60.00258 * 1 2 3 25 25 H 1.09003 * 109.46915 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47152 * 89.99877 * 5 4 3 27 27 H 1.09001 * 109.46980 * 329.99978 * 5 4 3 28 28 H 1.09004 * 109.47113 * 209.99958 * 5 4 3 29 29 H 1.07999 * 119.95318 * 179.72117 * 6 4 3 30 30 H 1.00900 * 110.99827 * 300.00652 * 10 8 7 31 31 H 1.00902 * 110.99930 * 63.94686 * 10 8 7 32 32 H 1.09002 * 109.47113 * 305.00098 * 11 8 7 33 33 H 1.08994 * 109.46917 * 64.99625 * 11 8 7 34 34 H 0.97000 * 119.99962 * 180.02562 * 15 14 12 35 35 H 1.07999 * 119.98629 * 179.74645 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 2.3616 1.8303 1.2001 5 6 2.0197 1.1608 2.5062 6 6 2.9841 3.0639 1.1978 7 6 3.3035 3.6771 0.0005 8 6 3.9884 5.0194 0.0021 9 1 3.8398 5.5020 0.9682 10 7 3.4190 5.8612 -1.0586 11 6 5.4859 4.8282 -0.2473 12 6 6.1892 6.1553 -0.1239 13 1 5.6247 7.0460 0.1095 14 6 7.5534 6.2322 -0.3080 15 7 8.1672 7.3904 -0.2008 16 14 8.5299 4.6915 -0.7110 17 1 8.5912 4.5154 -2.1842 18 1 9.9068 4.8226 -0.1703 19 1 7.8680 3.5117 -0.0984 20 6 2.9909 3.0636 -1.1984 21 6 2.3625 1.8312 -1.2022 22 9 2.0573 1.2311 -2.3735 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.8527 0.5324 2.8214 27 1 1.1292 0.5457 2.3770 28 1 1.8299 1.9201 3.2649 29 1 3.2256 3.5478 2.1326 30 1 3.5442 5.4352 -1.9646 31 1 2.4448 6.0556 -0.8821 32 1 5.8908 4.1327 0.4879 33 1 5.6390 4.4275 -1.2493 34 1 9.1269 7.4446 -0.3307 35 1 3.2377 3.5465 -2.1324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260034517.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:17 Heat of formation + Delta-G solvation = -87.434299 kcal Electronic energy + Delta-G solvation = -18572.299830 eV Core-core repulsion = 15483.882029 eV Total energy + Delta-G solvation = -3088.417801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.02287 -41.16634 -39.14907 -36.62328 -34.54386 -33.21587 -31.00234 -30.71949 -28.64149 -27.32903 -25.90180 -23.44028 -23.19824 -21.01021 -19.06386 -18.88941 -18.18614 -17.76017 -17.18852 -16.69824 -16.22374 -16.11608 -15.82546 -15.57918 -15.06189 -14.62348 -14.41812 -14.32279 -14.23838 -13.60154 -13.47146 -13.13435 -12.96645 -12.78312 -12.70781 -12.46618 -12.10317 -11.77724 -11.62599 -11.29192 -11.07324 -10.70203 -9.79597 -9.66808 -9.37110 -8.19374 -6.19125 -0.08768 0.04424 1.36464 1.38094 1.48266 2.22557 2.39926 2.65737 3.07461 3.14766 3.58901 3.67859 3.86670 4.10851 4.16612 4.34591 4.36714 4.38596 4.47515 4.54879 4.69599 4.76509 4.79183 4.83116 4.92934 5.18823 5.19578 5.24320 5.34011 5.54856 5.59699 5.71296 6.34177 6.35708 6.49034 6.76866 6.90341 7.42133 8.97660 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.028868 B = 0.005436 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.693308 B = 5149.306933 C = 5210.231094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.342 6.342 3 C 0.044 3.956 4 C -0.072 4.072 5 C -0.108 4.108 6 C -0.111 4.111 7 C -0.084 4.084 8 C 0.153 3.847 9 H 0.085 0.915 10 N -0.832 5.832 11 C 0.002 3.998 12 C -0.494 4.494 13 H 0.043 0.957 14 C 0.003 3.997 15 N -0.954 5.954 16 Si 0.938 3.062 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.251 1.251 20 C -0.153 4.153 21 C 0.069 3.931 22 F -0.142 7.142 23 H 0.063 0.937 24 H 0.041 0.959 25 H 0.119 0.881 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.152 0.848 30 H 0.339 0.661 31 H 0.344 0.656 32 H 0.022 0.978 33 H 0.012 0.988 34 H 0.262 0.738 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.153 -15.517 3.057 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.259 6.259 3 C 0.000 4.000 4 C -0.073 4.073 5 C -0.164 4.164 6 C -0.130 4.130 7 C -0.086 4.086 8 C 0.041 3.959 9 H 0.103 0.897 10 N -0.362 5.362 11 C -0.036 4.036 12 C -0.532 4.532 13 H 0.061 0.939 14 C -0.193 4.193 15 N -0.596 5.596 16 Si 0.763 3.237 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.174 1.174 20 C -0.172 4.172 21 C 0.049 3.951 22 F -0.121 7.121 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.137 0.863 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.170 0.830 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.041 0.959 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.400 -15.078 3.223 22.510 hybrid contribution 0.085 -0.893 -1.010 1.351 sum -16.315 -15.971 2.213 22.938 Atomic orbital electron populations 1.23287 0.77150 1.05082 1.01290 1.86052 1.21809 1.23744 1.94308 1.18577 1.02166 0.88305 0.90994 1.20348 0.97593 0.93883 0.95456 1.20804 1.02830 1.01023 0.91777 1.21222 0.98487 0.94617 0.98643 1.21040 0.96350 0.98478 0.92757 1.20258 0.93416 0.85994 0.96211 0.89696 1.58711 1.22069 1.50766 1.04640 1.19556 0.92232 0.95628 0.96199 1.21257 0.92128 0.94455 1.45405 0.93903 1.25861 0.99178 0.98639 0.95590 1.70060 1.09907 1.26511 1.53124 0.85848 0.77999 0.81005 0.78882 1.19900 1.21214 1.17443 1.20914 1.01851 0.94318 1.00100 1.18176 1.02919 0.92979 0.80996 1.91449 1.91350 1.83276 1.46018 0.91838 0.93984 0.86294 0.89989 0.90432 0.89178 0.83036 0.84678 0.84296 0.95931 0.96994 0.92889 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.76 113.37 1.22 1.63 16 2 O -0.34 -8.40 9.50 -93.13 -0.88 -9.29 16 3 C 0.04 1.19 5.70 22.53 0.13 1.32 16 4 C -0.07 -1.72 5.89 -19.78 -0.12 -1.83 16 5 C -0.11 -1.80 9.79 71.24 0.70 -1.11 16 6 C -0.11 -2.89 9.31 22.26 0.21 -2.68 16 7 C -0.08 -2.53 4.95 -19.85 -0.10 -2.63 16 8 C 0.15 5.54 2.93 44.17 0.13 5.67 16 9 H 0.08 3.12 8.00 -2.39 -0.02 3.10 16 10 N -0.83 -28.55 8.77 -171.80 -1.51 -30.06 16 11 C 0.00 0.07 3.67 29.85 0.11 0.18 16 12 C -0.49 -28.00 9.39 25.60 0.24 -27.76 16 13 H 0.04 2.70 7.99 -2.91 -0.02 2.68 16 14 C 0.00 0.17 5.47 84.65 0.46 0.63 16 15 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 16 Si 0.94 44.99 27.47 68.60 1.88 46.87 16 17 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 19 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 20 C -0.15 -4.54 9.27 22.30 0.21 -4.33 16 21 C 0.07 2.04 7.31 22.45 0.16 2.20 16 22 F -0.14 -4.34 17.11 44.97 0.77 -3.57 16 23 H 0.06 0.83 7.26 -2.39 -0.02 0.81 16 24 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.08 1.13 6.32 -2.39 -0.02 1.12 16 28 H 0.09 1.18 8.08 -2.38 -0.02 1.16 16 29 H 0.15 3.40 8.03 -2.91 -0.02 3.38 16 30 H 0.34 10.95 7.34 -89.69 -0.66 10.29 16 31 H 0.34 9.64 9.06 -89.69 -0.81 8.83 16 32 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 33 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 34 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 35 H 0.14 3.95 6.66 -2.91 -0.02 3.93 16 Total: -1.00 -68.93 298.25 3.51 -65.43 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.41 Total: 19.41 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 3.35 Total: -28.72 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -1.21 Total: -90.14 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.88 Total: -9.29 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.77 Total: -3.57 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Total: -68.93 3.51 -65.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260034517.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.009 kcal (2) G-P(sol) polarization free energy of solvation -68.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds