Wall clock time and date at job start Mon Mar 30 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99968 * 2 1 4 4 C 1.39679 * 110.99918 * 123.95056 * 2 1 3 5 5 C 1.38941 * 120.06405 * 299.97973 * 4 2 1 6 6 C 1.38091 * 119.94630 * 180.02562 * 5 4 2 7 7 C 1.38289 * 120.08883 * 359.97384 * 6 5 4 8 8 C 1.38387 * 120.13488 * 359.77225 * 7 6 5 9 9 Cl 1.73601 * 119.97442 * 180.27644 * 8 7 6 10 10 C 1.38237 * 120.04776 * 0.50542 * 8 7 6 11 11 C 1.50697 * 120.04404 * 179.74171 * 10 8 7 12 12 C 1.52997 * 109.47466 * 269.72940 * 11 10 8 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 H 1.09000 * 109.47132 * 300.00595 * 1 2 3 22 22 H 1.08998 * 109.46946 * 60.00521 * 1 2 3 23 23 H 1.08997 * 109.47247 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46820 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46933 * 299.99238 * 3 2 1 26 26 H 1.08990 * 109.47426 * 59.99873 * 3 2 1 27 27 H 1.07998 * 120.03002 * 0.04327 * 5 4 2 28 28 H 1.08003 * 119.95256 * 180.02562 * 6 5 4 29 29 H 1.07997 * 119.93086 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47120 * 149.72693 * 11 10 8 31 31 H 1.08998 * 109.46862 * 29.73495 * 11 10 8 32 32 H 1.09002 * 109.47153 * 59.99773 * 12 11 10 33 33 H 1.09001 * 109.46832 * 299.99964 * 12 11 10 34 34 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9695 -0.7283 1.0817 5 6 1.6580 -0.3474 2.3811 6 6 2.1546 -1.0688 3.4487 7 6 2.9610 -2.1700 3.2262 8 6 3.2692 -2.5556 1.9334 9 17 4.2761 -3.9429 1.6588 10 6 2.7799 -1.8341 0.8606 11 6 3.1204 -2.2506 -0.5470 12 6 4.4018 -1.5432 -0.9925 13 6 4.7425 -1.9603 -2.4000 14 1 4.1084 -2.6596 -2.9245 15 6 5.8634 -1.4482 -3.0184 16 7 6.6354 -0.5962 -2.3799 17 14 6.2854 -1.9646 -4.7633 18 1 5.1721 -1.5920 -5.6728 19 1 7.5292 -1.2781 -5.1956 20 1 6.4907 -3.4347 -4.8086 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.0851 1.3423 -0.0005 25 1 1.6460 1.8947 -0.8901 26 1 1.6460 1.8948 0.8899 27 1 1.0277 0.5120 2.5560 28 1 1.9122 -0.7731 4.4588 29 1 3.3477 -2.7326 4.0631 30 1 2.3033 -1.9769 -1.2146 31 1 3.2706 -3.3297 -0.5803 32 1 5.2188 -1.8170 -0.3249 33 1 4.2514 -0.4641 -0.9592 34 1 7.4241 -0.2363 -2.8149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260084909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:03 Heat of formation + Delta-G solvation = 15.942485 kcal Electronic energy + Delta-G solvation = -16608.684626 eV Core-core repulsion = 13953.085953 eV Total energy + Delta-G solvation = -2655.598673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83125 -36.72378 -35.56150 -33.98787 -32.01306 -29.61295 -28.80989 -27.38352 -25.08369 -24.25473 -22.02259 -20.94921 -19.91515 -16.87236 -16.19028 -15.87857 -15.18514 -14.82000 -14.43831 -14.36704 -13.69683 -13.14110 -12.91706 -12.54332 -12.21932 -12.14487 -12.06109 -11.51711 -11.50397 -11.19463 -11.03707 -10.96409 -10.79789 -10.57119 -10.28811 -9.58925 -9.56283 -8.98564 -8.39766 -8.23906 -8.19271 -8.10238 -5.88844 -3.89612 1.36880 1.57778 2.57333 3.40090 3.43800 3.46799 3.83852 4.11884 4.55090 5.02561 5.16813 5.23865 5.36262 5.41850 5.47070 5.58902 5.68629 5.71776 5.77675 5.94326 6.10694 6.22628 6.32378 6.50113 6.58546 6.74744 6.89405 6.98538 7.12336 7.27022 7.64355 7.82224 8.01074 8.13326 8.54811 9.16431 9.72659 11.22430 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.007564 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.084751 B = 3700.644030 C = 4667.892653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.498 5.498 3 C 0.033 3.967 4 C 0.095 3.905 5 C -0.147 4.147 6 C -0.120 4.120 7 C -0.115 4.115 8 C -0.034 4.034 9 Cl -0.063 7.063 10 C -0.025 4.025 11 C -0.076 4.076 12 C 0.041 3.959 13 C -0.512 4.512 14 H 0.053 0.947 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.278 1.278 21 H 0.024 0.976 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.023 0.977 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.014 0.986 33 H 0.018 0.982 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.009 0.574 10.561 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.218 5.218 3 C -0.114 4.114 4 C 0.001 3.999 5 C -0.167 4.167 6 C -0.139 4.139 7 C -0.133 4.133 8 C -0.061 4.061 9 Cl -0.034 7.034 10 C -0.027 4.027 11 C -0.113 4.113 12 C 0.004 3.996 13 C -0.550 4.550 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 H 0.043 0.957 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.041 0.959 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.036 0.964 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.608 0.347 10.048 14.615 hybrid contribution 0.167 0.140 -0.174 0.279 sum -10.440 0.487 9.874 14.378 Atomic orbital electron populations 1.22425 0.86510 1.02200 1.00499 1.59367 1.07527 1.14203 1.40718 1.22435 1.01957 0.86844 1.00123 1.18483 0.97874 0.95023 0.88519 1.21625 1.01435 1.00367 0.93269 1.20759 0.98843 0.95725 0.98591 1.20983 0.99382 0.97885 0.95090 1.20765 0.98525 0.92683 0.94101 1.98360 1.67458 1.40803 1.96740 1.20195 0.92974 0.92320 0.97219 1.20808 1.01671 1.00154 0.88670 1.18938 0.89717 0.95432 0.95528 1.21191 1.08794 1.25836 0.99200 0.92830 1.24975 0.96428 0.95267 0.97666 1.69961 1.15366 1.31058 1.37211 0.86716 0.77593 0.78705 0.85302 1.20311 1.21433 1.20349 0.95723 0.90955 0.91391 0.90324 0.90935 0.95886 0.86397 0.85823 0.85476 0.90759 0.92150 0.96728 0.96379 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.28 60.06 0.56 0.95 16 2 N -0.50 -8.09 3.94 -186.86 -0.74 -8.82 16 3 C 0.03 0.49 9.33 60.07 0.56 1.05 16 4 C 0.10 1.61 4.69 -83.79 -0.39 1.21 16 5 C -0.15 -2.07 8.66 -39.37 -0.34 -2.42 16 6 C -0.12 -1.58 10.04 -39.62 -0.40 -1.97 16 7 C -0.11 -1.66 9.83 -39.51 -0.39 -2.05 16 8 C -0.03 -0.59 6.31 -39.53 -0.25 -0.84 16 9 Cl -0.06 -1.11 27.29 -51.86 -1.42 -2.52 16 10 C -0.03 -0.49 5.15 -104.39 -0.54 -1.02 16 11 C -0.08 -1.66 4.65 -27.89 -0.13 -1.79 16 12 C 0.04 1.08 4.95 -27.88 -0.14 0.95 16 13 C -0.51 -14.77 9.11 -34.44 -0.31 -15.09 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 17 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H 0.02 0.27 7.26 -51.93 -0.38 -0.11 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 24 H 0.08 1.38 7.95 -51.92 -0.41 0.97 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.02 0.29 7.47 -51.93 -0.39 -0.10 16 27 H 0.12 1.42 7.08 -52.49 -0.37 1.04 16 28 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 29 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.07 1.64 7.46 -51.93 -0.39 1.25 16 31 H 0.06 1.32 6.89 -51.93 -0.36 0.96 16 32 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.02 0.51 7.97 -51.93 -0.41 0.09 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 299.63 15.07 4.52 4.52 Total: -1.00 -31.01 299.63 -8.57 -39.59 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -4.79 Total: -3.79 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -1.87 Total: -19.45 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.00 Total: -35.44 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.42 Total: -2.52 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.01 -8.57 -39.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260084909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.530 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds