Wall clock time and date at job start Mon Mar 30 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99968 * 2 1 4 4 C 1.39679 * 110.99918 * 123.95056 * 2 1 3 5 5 C 1.38941 * 120.06405 * 299.97973 * 4 2 1 6 6 C 1.38091 * 119.94630 * 180.02562 * 5 4 2 7 7 C 1.38289 * 120.08883 * 359.97384 * 6 5 4 8 8 C 1.38387 * 120.13488 * 359.77225 * 7 6 5 9 9 Cl 1.73601 * 119.97442 * 180.27644 * 8 7 6 10 10 C 1.38237 * 120.04776 * 0.50542 * 8 7 6 11 11 C 1.50697 * 120.04404 * 179.74171 * 10 8 7 12 12 C 1.52997 * 109.47466 * 269.72940 * 11 10 8 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 H 1.09000 * 109.47132 * 300.00595 * 1 2 3 22 22 H 1.08998 * 109.46946 * 60.00521 * 1 2 3 23 23 H 1.08997 * 109.47247 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46820 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46933 * 299.99238 * 3 2 1 26 26 H 1.08990 * 109.47426 * 59.99873 * 3 2 1 27 27 H 1.07998 * 120.03002 * 0.04327 * 5 4 2 28 28 H 1.08003 * 119.95256 * 180.02562 * 6 5 4 29 29 H 1.07997 * 119.93086 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47120 * 149.72693 * 11 10 8 31 31 H 1.08998 * 109.46862 * 29.73495 * 11 10 8 32 32 H 1.09002 * 109.47153 * 59.99773 * 12 11 10 33 33 H 1.09001 * 109.46832 * 299.99964 * 12 11 10 34 34 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9695 -0.7283 1.0817 5 6 1.6580 -0.3474 2.3811 6 6 2.1546 -1.0688 3.4487 7 6 2.9610 -2.1700 3.2262 8 6 3.2692 -2.5556 1.9334 9 17 4.2761 -3.9429 1.6588 10 6 2.7799 -1.8341 0.8606 11 6 3.1204 -2.2506 -0.5470 12 6 4.4018 -1.5432 -0.9925 13 6 4.7425 -1.9603 -2.4000 14 1 4.1084 -2.6596 -2.9245 15 6 5.8634 -1.4482 -3.0184 16 7 6.6354 -0.5962 -2.3799 17 14 6.2854 -1.9646 -4.7633 18 1 5.1721 -1.5920 -5.6728 19 1 7.5292 -1.2781 -5.1956 20 1 6.4907 -3.4347 -4.8086 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.0851 1.3423 -0.0005 25 1 1.6460 1.8947 -0.8901 26 1 1.6460 1.8948 0.8899 27 1 1.0277 0.5120 2.5560 28 1 1.9122 -0.7731 4.4588 29 1 3.3477 -2.7326 4.0631 30 1 2.3033 -1.9769 -1.2146 31 1 3.2706 -3.3297 -0.5803 32 1 5.2188 -1.8170 -0.3249 33 1 4.2514 -0.4641 -0.9592 34 1 7.4241 -0.2363 -2.8149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260084909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:03 Heat of formation + Delta-G solvation = -1.440495 kcal Electronic energy + Delta-G solvation = -16609.438409 eV Core-core repulsion = 13953.085953 eV Total energy + Delta-G solvation = -2656.352455 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05534 -37.97381 -36.81058 -35.91075 -33.91643 -30.82796 -30.49928 -28.46463 -26.94563 -25.46491 -23.72269 -22.28693 -21.42490 -18.54211 -17.91604 -17.16569 -16.52884 -16.40021 -15.93300 -15.63725 -14.87619 -14.66133 -14.39893 -14.23062 -14.00395 -13.29469 -13.21800 -13.12313 -12.83021 -12.73548 -12.63022 -12.44986 -12.37771 -12.24465 -11.77311 -11.55187 -11.50654 -11.09785 -10.48500 -9.59019 -9.48545 -9.33701 -8.14012 -6.23953 0.17788 0.34613 1.26587 1.39993 1.43505 1.51017 2.43708 2.63984 2.98711 3.18587 3.92927 4.04801 4.08510 4.22786 4.39310 4.42937 4.58753 4.64206 4.64435 4.76867 4.81324 4.98186 5.00618 5.02524 5.30250 5.33016 5.34535 5.46671 5.56657 5.71814 5.90126 5.93105 6.04326 6.31509 6.47443 6.91271 7.43447 8.97292 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.007564 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.084751 B = 3700.644030 C = 4667.892653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.529 5.529 3 C 0.038 3.962 4 C 0.089 3.911 5 C -0.143 4.143 6 C -0.102 4.102 7 C -0.115 4.115 8 C -0.049 4.049 9 Cl -0.078 7.078 10 C -0.066 4.066 11 C -0.055 4.055 12 C 0.057 3.943 13 C -0.536 4.536 14 H 0.055 0.945 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.960 3.040 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.269 1.269 21 H 0.048 0.952 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.040 0.960 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.148 0.852 28 H 0.168 0.832 29 H 0.153 0.847 30 H 0.066 0.934 31 H 0.052 0.948 32 H -0.016 1.016 33 H -0.010 1.010 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.515 1.068 11.640 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.250 5.250 3 C -0.108 4.108 4 C -0.005 4.005 5 C -0.163 4.163 6 C -0.120 4.120 7 C -0.134 4.134 8 C -0.076 4.076 9 Cl -0.049 7.049 10 C -0.068 4.068 11 C -0.093 4.093 12 C 0.020 3.980 13 C -0.574 4.574 14 H 0.073 0.927 15 C -0.195 4.195 16 N -0.572 5.572 17 Si 0.784 3.216 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.194 1.194 21 H 0.066 0.934 22 H 0.100 0.900 23 H 0.082 0.918 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.069 0.931 27 H 0.166 0.834 28 H 0.186 0.814 29 H 0.171 0.829 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.002 0.998 33 H 0.009 0.991 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.134 0.836 11.130 16.487 hybrid contribution 0.593 0.036 -0.425 0.731 sum -11.541 0.872 10.705 15.766 Atomic orbital electron populations 1.22458 0.84263 1.02463 1.02111 1.59276 1.09661 1.14630 1.41437 1.22346 0.99583 0.86928 1.01927 1.18641 0.97474 0.94325 0.90087 1.21926 1.01208 1.01072 0.92062 1.21284 0.96420 0.93930 1.00374 1.21336 0.99225 0.98513 0.94307 1.20991 0.98844 0.92541 0.95199 1.98346 1.68018 1.41606 1.96906 1.20051 0.96130 0.94844 0.95734 1.20375 0.98853 0.98955 0.91104 1.18660 0.91112 0.94020 0.94212 1.21617 1.09257 1.26060 1.00480 0.92661 1.25895 0.96179 0.95078 1.02324 1.70102 1.15823 1.32083 1.39201 0.85587 0.77662 0.78623 0.79687 1.19139 1.20751 1.19436 0.93396 0.89953 0.91814 0.94106 0.90029 0.93112 0.83449 0.81445 0.82928 0.91571 0.92910 0.99790 0.99114 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 9.28 127.69 1.19 1.96 16 2 N -0.53 -16.90 3.94 -745.11 -2.93 -19.83 16 3 C 0.04 1.14 9.33 127.69 1.19 2.33 16 4 C 0.09 2.93 4.69 38.21 0.18 3.11 16 5 C -0.14 -3.57 8.66 22.40 0.19 -3.37 16 6 C -0.10 -2.25 10.04 22.25 0.22 -2.02 16 7 C -0.12 -3.07 9.83 22.32 0.22 -2.85 16 8 C -0.05 -1.70 6.31 22.31 0.14 -1.56 16 9 Cl -0.08 -2.81 27.29 -2.72 -0.07 -2.89 16 10 C -0.07 -2.56 5.15 -19.71 -0.10 -2.66 16 11 C -0.06 -2.54 4.65 29.85 0.14 -2.40 16 12 C 0.06 3.19 4.95 29.85 0.15 3.34 16 13 C -0.54 -31.99 9.11 25.60 0.23 -31.76 16 14 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 15 C 0.00 0.16 5.46 84.66 0.46 0.62 16 16 N -0.93 -58.46 13.29 21.45 0.28 -58.17 16 17 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H 0.05 0.89 7.26 -2.39 -0.02 0.87 16 22 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.06 1.52 8.12 -2.39 -0.02 1.51 16 24 H 0.04 1.49 7.95 -2.38 -0.02 1.47 16 25 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 26 H 0.05 1.18 7.47 -2.39 -0.02 1.16 16 27 H 0.15 2.81 7.08 -2.91 -0.02 2.79 16 28 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 30 H 0.07 3.05 7.46 -2.39 -0.02 3.03 16 31 H 0.05 2.42 6.89 -2.39 -0.02 2.41 16 32 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 33 H -0.01 -0.58 7.97 -2.39 -0.02 -0.60 16 34 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -69.67 299.63 4.59 -65.08 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 1.08 Total: 3.18 kcal Atomic # 6 Polarization: -39.49 SS G_CDS: 4.21 Total: -35.28 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -2.65 Total: -78.00 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -0.07 Total: -2.89 kcal Total: -69.67 4.59 -65.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260084909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.635 kcal (2) G-P(sol) polarization free energy of solvation -69.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds