Wall clock time and date at job start Mon Mar 30 2020 07:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 116.99931 * 2 1 4 4 C 1.38770 * 120.04193 * 270.27483 * 3 2 1 5 5 C 1.50697 * 120.00310 * 0.02562 * 4 3 2 6 6 C 1.38138 * 119.99302 * 180.27795 * 4 3 2 7 7 C 1.38257 * 120.07586 * 359.47043 * 6 4 3 8 8 C 1.50700 * 119.95130 * 180.27522 * 7 6 4 9 9 C 1.38469 * 120.08861 * 0.25431 * 7 6 4 10 10 F 1.35099 * 119.99976 * 180.02562 * 9 7 6 11 11 C 1.38384 * 120.00480 * 359.97438 * 9 7 6 12 12 C 1.50705 * 120.04027 * 180.02562 * 11 9 7 13 13 H 1.08998 * 109.46731 * 165.00141 * 12 11 9 14 14 N 1.46899 * 109.46837 * 45.00217 * 12 11 9 15 15 C 1.50697 * 109.46853 * 285.00370 * 12 11 9 16 16 H 1.07995 * 120.00389 * 5.10695 * 15 12 11 17 17 C 1.37879 * 119.99930 * 185.11499 * 15 12 11 18 18 N 1.31515 * 119.99778 * 7.40141 * 17 15 12 19 19 Si 1.86793 * 120.00329 * 187.40848 * 17 15 12 20 20 H 1.48497 * 109.47293 * 84.97796 * 19 17 15 21 21 H 1.48496 * 109.47364 * 204.98159 * 19 17 15 22 22 H 1.48503 * 109.46849 * 324.97935 * 19 17 15 23 23 H 1.09008 * 109.47176 * 299.99818 * 1 2 3 24 24 H 1.09001 * 109.47579 * 59.99536 * 1 2 3 25 25 H 1.08999 * 109.47366 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47328 * 270.25409 * 5 4 3 27 27 H 1.09001 * 109.47037 * 30.26160 * 5 4 3 28 28 H 1.09005 * 109.46812 * 150.25552 * 5 4 3 29 29 H 1.07995 * 119.96360 * 179.74122 * 6 4 3 30 30 H 1.09002 * 109.47056 * 90.00037 * 8 7 6 31 31 H 1.09002 * 109.46843 * 209.99494 * 8 7 6 32 32 H 1.08994 * 109.47700 * 329.99850 * 8 7 6 33 33 H 1.00903 * 110.99429 * 171.67223 * 14 12 11 34 34 H 1.00901 * 110.99922 * 295.61885 * 14 12 11 35 35 H 0.97002 * 119.99910 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3562 1.8325 -1.2013 5 6 2.0085 1.1652 -2.5069 6 6 2.9885 3.0607 -1.2001 7 6 3.3030 3.6769 -0.0031 8 6 3.9872 5.0197 -0.0052 9 6 2.9898 3.0622 1.1975 10 9 3.2975 3.6663 2.3661 11 6 2.3607 1.8297 1.2004 12 6 2.0189 1.1602 2.5066 13 1 1.3085 0.3535 2.3264 14 7 1.4215 2.1440 3.4194 15 6 3.2723 0.5971 3.1254 16 1 4.2319 0.7830 2.6662 17 6 3.1939 -0.1557 4.2779 18 7 2.0198 -0.5051 4.7565 19 14 4.7553 -0.6791 5.1597 20 1 5.1984 0.4080 6.0690 21 1 4.4893 -1.9079 5.9499 22 1 5.8194 -0.9536 4.1609 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 2.8383 0.5339 -2.8246 27 1 1.1159 0.5534 -2.3759 28 1 1.8197 1.9257 -3.2647 29 1 3.2335 3.5421 -2.1353 30 1 3.2365 5.8100 -0.0052 31 1 4.6108 5.1110 0.8842 32 1 4.6092 5.1093 -0.8957 33 1 1.0603 1.6956 4.2481 34 1 2.0854 2.8651 3.6587 35 1 1.9647 -1.0344 5.5676 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260085428.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:43 Heat of formation + Delta-G solvation = -70.424045 kcal Electronic energy + Delta-G solvation = -19443.624238 eV Core-core repulsion = 16355.944056 eV Total energy + Delta-G solvation = -3087.680182 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -48.13649 -39.62605 -36.81890 -34.87574 -32.43775 -31.84457 -30.03803 -27.24118 -26.80955 -25.83323 -24.95895 -23.01315 -20.42414 -19.79396 -17.54199 -17.04786 -16.26680 -15.24606 -15.10106 -14.83143 -14.57500 -14.23289 -14.00299 -13.52974 -13.22764 -12.91016 -12.83316 -12.67400 -12.52702 -12.22880 -11.81859 -11.63899 -11.45073 -11.13171 -11.01780 -10.87366 -10.61967 -10.45734 -10.02823 -9.65367 -9.27794 -8.56290 -7.97673 -7.77127 -7.21736 -6.07406 -4.18257 1.58009 1.81708 3.26667 3.32658 3.37135 3.84577 4.34791 4.43221 4.94355 5.08714 5.16627 5.25701 5.37441 5.55307 5.64011 5.68415 5.79578 5.81528 5.86825 5.97812 6.06056 6.08862 6.15428 6.30325 6.50149 6.67186 6.71566 6.83569 6.98109 7.31952 7.66853 7.78266 8.06657 8.15143 8.71511 8.86693 9.08481 9.48667 10.93973 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.008884 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.613130 B = 3151.121098 C = 3866.939366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.108 3.892 4 C -0.119 4.119 5 C -0.102 4.102 6 C -0.108 4.108 7 C -0.132 4.132 8 C -0.106 4.106 9 C 0.113 3.887 10 F -0.128 7.128 11 C -0.069 4.069 12 C 0.243 3.757 13 H 0.064 0.936 14 N -0.858 5.858 15 C -0.537 4.537 16 H 0.053 0.947 17 C 0.069 3.931 18 N -0.890 5.890 19 Si 0.895 3.105 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.053 0.947 24 H 0.037 0.963 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.125 0.875 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.346 0.654 34 H 0.323 0.677 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.940 5.979 -11.094 12.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.238 6.238 3 C 0.064 3.936 4 C -0.119 4.119 5 C -0.158 4.158 6 C -0.127 4.127 7 C -0.133 4.133 8 C -0.163 4.163 9 C 0.094 3.906 10 F -0.106 7.106 11 C -0.071 4.071 12 C 0.133 3.867 13 H 0.082 0.918 14 N -0.389 5.389 15 C -0.577 4.577 16 H 0.071 0.929 17 C -0.134 4.134 18 N -0.528 5.528 19 Si 0.723 3.277 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.143 0.857 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.159 0.841 34 H 0.136 0.864 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.464 5.866 -11.497 12.989 hybrid contribution 1.555 -0.500 1.493 2.213 sum 0.092 5.366 -10.004 11.352 Atomic orbital electron populations 1.22933 0.79724 1.02703 1.00449 1.86060 1.19232 1.24431 1.94102 1.18011 0.98333 0.86694 0.90565 1.20077 1.01770 0.95158 0.94929 1.20604 1.01953 0.99923 0.93364 1.20347 1.00948 0.94796 0.96567 1.19838 1.03116 0.98288 0.92087 1.20628 0.99763 0.93196 1.02698 1.17091 1.00637 0.92329 0.80583 1.91335 1.90649 1.82565 1.46076 1.20888 0.95872 0.92209 0.98174 1.17890 0.94844 0.89740 0.84194 0.91793 1.59585 1.41152 1.16325 1.21825 1.21652 0.93394 1.33358 1.09271 0.92874 1.24962 0.96343 0.94768 0.97312 1.69885 1.23024 1.37596 1.22342 0.86554 0.83508 0.77972 0.79695 1.20501 1.21125 1.19873 0.92844 0.94407 0.89320 0.91349 0.91645 0.92115 0.85707 0.91408 0.91440 0.91627 0.84098 0.86380 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.36 101.05 1.05 1.64 16 2 O -0.32 -6.59 8.66 -19.42 -0.17 -6.76 16 3 C 0.11 2.24 5.67 -39.22 -0.22 2.02 16 4 C -0.12 -2.03 5.89 -104.46 -0.62 -2.64 16 5 C -0.10 -1.35 9.79 36.00 0.35 -1.00 16 6 C -0.11 -1.70 9.35 -39.61 -0.37 -2.08 16 7 C -0.13 -2.30 5.89 -104.53 -0.62 -2.91 16 8 C -0.11 -1.44 9.83 36.01 0.35 -1.09 16 9 C 0.11 2.40 6.95 -39.44 -0.27 2.13 16 10 F -0.13 -2.79 13.59 2.25 0.03 -2.76 16 11 C -0.07 -1.60 4.91 -104.41 -0.51 -2.11 16 12 C 0.24 6.31 2.61 -70.02 -0.18 6.13 16 13 H 0.06 1.80 6.26 -51.93 -0.32 1.48 16 14 N -0.86 -21.31 9.01 -6.65 -0.06 -21.37 16 15 C -0.54 -15.19 8.55 -34.44 -0.29 -15.48 16 16 H 0.05 1.55 7.75 -52.49 -0.41 1.14 16 17 C 0.07 1.93 5.35 -17.82 -0.10 1.83 16 18 N -0.89 -25.24 12.23 55.43 0.68 -24.57 16 19 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 23 H 0.05 0.96 7.63 -51.92 -0.40 0.56 16 24 H 0.04 0.52 7.23 -51.93 -0.38 0.15 16 25 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.85 6.30 -51.93 -0.33 0.53 16 28 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.95 7.64 -51.93 -0.40 0.55 16 32 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.35 8.97 7.90 -39.29 -0.31 8.66 16 34 H 0.32 7.91 6.27 -39.29 -0.25 7.66 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 293.43 15.07 4.42 4.42 Total: -1.00 -30.01 293.43 -6.00 -36.01 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -4.45 Total: 11.84 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -1.43 Total: -13.56 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.62 Total: -45.94 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.17 Total: -6.76 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.03 Total: -2.76 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.01 -6.00 -36.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085428.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.414 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds