Wall clock time and date at job start Mon Mar 30 2020 07:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 116.99931 * 2 1 4 4 C 1.38770 * 120.04193 * 270.27483 * 3 2 1 5 5 C 1.50697 * 120.00310 * 0.02562 * 4 3 2 6 6 C 1.38138 * 119.99302 * 180.27795 * 4 3 2 7 7 C 1.38257 * 120.07586 * 359.47043 * 6 4 3 8 8 C 1.50700 * 119.95130 * 180.27522 * 7 6 4 9 9 C 1.38469 * 120.08861 * 0.25431 * 7 6 4 10 10 F 1.35099 * 119.99976 * 180.02562 * 9 7 6 11 11 C 1.38384 * 120.00480 * 359.97438 * 9 7 6 12 12 C 1.50705 * 120.04027 * 180.02562 * 11 9 7 13 13 H 1.08998 * 109.46731 * 165.00141 * 12 11 9 14 14 N 1.46899 * 109.46837 * 45.00217 * 12 11 9 15 15 C 1.50697 * 109.46853 * 285.00370 * 12 11 9 16 16 H 1.07995 * 120.00389 * 5.10695 * 15 12 11 17 17 C 1.37879 * 119.99930 * 185.11499 * 15 12 11 18 18 N 1.31515 * 119.99778 * 7.40141 * 17 15 12 19 19 Si 1.86793 * 120.00329 * 187.40848 * 17 15 12 20 20 H 1.48497 * 109.47293 * 84.97796 * 19 17 15 21 21 H 1.48496 * 109.47364 * 204.98159 * 19 17 15 22 22 H 1.48503 * 109.46849 * 324.97935 * 19 17 15 23 23 H 1.09008 * 109.47176 * 299.99818 * 1 2 3 24 24 H 1.09001 * 109.47579 * 59.99536 * 1 2 3 25 25 H 1.08999 * 109.47366 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47328 * 270.25409 * 5 4 3 27 27 H 1.09001 * 109.47037 * 30.26160 * 5 4 3 28 28 H 1.09005 * 109.46812 * 150.25552 * 5 4 3 29 29 H 1.07995 * 119.96360 * 179.74122 * 6 4 3 30 30 H 1.09002 * 109.47056 * 90.00037 * 8 7 6 31 31 H 1.09002 * 109.46843 * 209.99494 * 8 7 6 32 32 H 1.08994 * 109.47700 * 329.99850 * 8 7 6 33 33 H 1.00903 * 110.99429 * 171.67223 * 14 12 11 34 34 H 1.00901 * 110.99922 * 295.61885 * 14 12 11 35 35 H 0.97002 * 119.99910 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3562 1.8325 -1.2013 5 6 2.0085 1.1652 -2.5069 6 6 2.9885 3.0607 -1.2001 7 6 3.3030 3.6769 -0.0031 8 6 3.9872 5.0197 -0.0052 9 6 2.9898 3.0622 1.1975 10 9 3.2975 3.6663 2.3661 11 6 2.3607 1.8297 1.2004 12 6 2.0189 1.1602 2.5066 13 1 1.3085 0.3535 2.3264 14 7 1.4215 2.1440 3.4194 15 6 3.2723 0.5971 3.1254 16 1 4.2319 0.7830 2.6662 17 6 3.1939 -0.1557 4.2779 18 7 2.0198 -0.5051 4.7565 19 14 4.7553 -0.6791 5.1597 20 1 5.1984 0.4080 6.0690 21 1 4.4893 -1.9079 5.9499 22 1 5.8194 -0.9536 4.1609 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 2.8383 0.5339 -2.8246 27 1 1.1159 0.5534 -2.3759 28 1 1.8197 1.9257 -3.2647 29 1 3.2335 3.5421 -2.1353 30 1 3.2365 5.8100 -0.0052 31 1 4.6108 5.1110 0.8842 32 1 4.6092 5.1093 -0.8957 33 1 1.0603 1.6956 4.2481 34 1 2.0854 2.8651 3.6587 35 1 1.9647 -1.0344 5.5676 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260085428.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:41 Heat of formation + Delta-G solvation = -90.362673 kcal Electronic energy + Delta-G solvation = -19444.488842 eV Core-core repulsion = 16355.944056 eV Total energy + Delta-G solvation = -3088.544785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.74421 -41.07174 -38.23087 -36.80017 -33.83657 -33.63107 -31.72430 -28.54315 -28.24738 -27.66284 -26.35024 -24.76172 -21.83426 -21.44665 -19.03412 -18.88107 -18.05476 -16.89973 -16.75576 -16.54900 -16.05863 -15.89628 -15.50649 -14.98779 -14.88180 -14.40293 -14.25832 -13.97395 -13.84393 -13.53114 -13.25236 -13.13996 -13.00903 -12.86131 -12.72716 -12.50237 -12.21062 -12.11961 -11.77610 -11.42860 -10.81790 -10.69271 -9.55328 -9.23624 -9.17086 -8.19466 -6.39867 0.16847 0.36360 1.31743 1.32375 1.42701 2.30944 2.46909 2.96178 3.01076 3.54396 3.87251 3.96363 3.97261 4.35116 4.39007 4.48492 4.57292 4.59780 4.72832 4.75638 4.81567 4.85979 4.90493 4.96345 5.08446 5.22734 5.39106 5.42573 5.49499 5.57862 5.71261 5.93404 6.03176 6.59232 6.64917 6.75203 7.00614 7.30645 8.79014 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.008884 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.613130 B = 3151.121098 C = 3866.939366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.346 6.346 3 C 0.085 3.915 4 C -0.113 4.113 5 C -0.100 4.100 6 C -0.094 4.094 7 C -0.127 4.127 8 C -0.104 4.104 9 C 0.081 3.919 10 F -0.142 7.142 11 C -0.112 4.112 12 C 0.251 3.749 13 H 0.030 0.970 14 N -0.848 5.848 15 C -0.556 4.556 16 H 0.035 0.965 17 C 0.025 3.975 18 N -0.911 5.911 19 Si 0.956 3.044 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.275 1.275 23 H 0.026 0.974 24 H 0.068 0.932 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.175 0.825 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.335 0.665 34 H 0.324 0.676 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.056 7.016 -13.628 15.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.263 6.263 3 C 0.041 3.959 4 C -0.114 4.114 5 C -0.156 4.156 6 C -0.112 4.112 7 C -0.128 4.128 8 C -0.161 4.161 9 C 0.061 3.939 10 F -0.121 7.121 11 C -0.114 4.114 12 C 0.141 3.859 13 H 0.048 0.952 14 N -0.377 5.377 15 C -0.595 4.595 16 H 0.053 0.947 17 C -0.176 4.176 18 N -0.550 5.550 19 Si 0.781 3.219 20 H -0.198 1.198 21 H -0.201 1.201 22 H -0.200 1.200 23 H 0.044 0.956 24 H 0.086 0.914 25 H 0.126 0.874 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.193 0.807 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.585 6.912 -14.039 15.659 hybrid contribution 1.238 -0.809 2.192 2.644 sum 0.653 6.103 -11.848 13.343 Atomic orbital electron populations 1.23075 0.78137 1.04064 1.00546 1.85997 1.21000 1.25045 1.94240 1.18343 0.99248 0.86978 0.91290 1.20528 1.00332 0.95403 0.95111 1.20705 1.02165 1.00843 0.91915 1.20938 0.98553 0.93881 0.97787 1.20312 1.01909 0.99554 0.91019 1.20731 1.00210 0.91270 1.03860 1.17453 1.02311 0.92494 0.81626 1.91278 1.90986 1.82679 1.47157 1.20809 0.99034 0.93942 0.97593 1.17589 0.92973 0.89336 0.86022 0.95163 1.59574 1.41024 1.16024 1.21115 1.21841 0.93598 1.34048 1.10051 0.94657 1.25700 0.99325 0.94744 0.97837 1.69977 1.24588 1.37841 1.22609 0.85613 0.79831 0.77973 0.78504 1.19781 1.20079 1.20016 0.95550 0.91353 0.87410 0.90513 0.91758 0.88560 0.80738 0.89703 0.92519 0.88244 0.85295 0.86235 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.18 10.36 113.37 1.17 2.36 16 2 O -0.35 -14.46 8.66 -92.42 -0.80 -15.26 16 3 C 0.09 3.56 5.67 22.50 0.13 3.68 16 4 C -0.11 -3.57 5.89 -19.76 -0.12 -3.69 16 5 C -0.10 -2.25 9.79 71.23 0.70 -1.56 16 6 C -0.09 -2.58 9.35 22.25 0.21 -2.37 16 7 C -0.13 -4.13 5.89 -19.80 -0.12 -4.24 16 8 C -0.10 -2.48 9.83 71.24 0.70 -1.78 16 9 C 0.08 3.46 6.95 22.36 0.16 3.61 16 10 F -0.14 -6.42 13.59 44.97 0.61 -5.81 16 11 C -0.11 -5.33 4.91 -19.72 -0.10 -5.42 16 12 C 0.25 13.72 2.61 43.42 0.11 13.83 16 13 H 0.03 1.83 6.26 -2.39 -0.01 1.81 16 14 N -0.85 -44.34 9.01 -174.95 -1.58 -45.92 16 15 C -0.56 -32.78 8.55 25.60 0.22 -32.56 16 16 H 0.04 2.15 7.75 -2.91 -0.02 2.12 16 17 C 0.02 1.42 5.35 84.66 0.45 1.87 16 18 N -0.91 -53.27 12.23 21.45 0.26 -53.00 16 19 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 20 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 H 0.03 0.99 7.63 -2.38 -0.02 0.97 16 24 H 0.07 1.81 7.23 -2.39 -0.02 1.79 16 25 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.48 6.30 -2.39 -0.02 1.46 16 28 H 0.10 1.51 8.09 -2.38 -0.02 1.49 16 29 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.48 7.64 -2.39 -0.02 1.46 16 32 H 0.10 1.71 8.08 -2.39 -0.02 1.69 16 33 H 0.34 18.34 7.90 -89.69 -0.71 17.63 16 34 H 0.32 16.67 6.27 -89.69 -0.56 16.11 16 35 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -68.75 293.43 3.89 -64.86 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.15 Total: 33.87 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 3.52 Total: -26.28 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -1.31 Total: -98.92 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.80 Total: -15.26 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 0.61 Total: -5.81 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -68.75 3.89 -64.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085428.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.503 kcal (2) G-P(sol) polarization free energy of solvation -68.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds