Wall clock time and date at job start Mon Mar 30 2020 07:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 117.00448 * 2 1 4 4 C 1.38771 * 120.04536 * 270.28194 * 3 2 1 5 5 C 1.50696 * 120.00451 * 359.97438 * 4 3 2 6 6 C 1.38135 * 119.99288 * 180.29914 * 4 3 2 7 7 C 1.38258 * 120.07909 * 359.41944 * 6 4 3 8 8 C 1.50704 * 119.95556 * 180.25723 * 7 6 4 9 9 C 1.38471 * 120.08380 * 0.28253 * 7 6 4 10 10 F 1.35100 * 119.99714 * 179.97438 * 9 7 6 11 11 C 1.38384 * 120.00830 * 0.02562 * 9 7 6 12 12 C 1.50693 * 120.04273 * 179.97438 * 11 9 7 13 13 H 1.08998 * 109.47761 * 194.99933 * 12 11 9 14 14 N 1.46904 * 109.47226 * 315.00303 * 12 11 9 15 15 C 1.50703 * 109.46985 * 74.99901 * 12 11 9 16 16 H 1.07995 * 120.00054 * 0.02562 * 15 12 11 17 17 C 1.37885 * 120.00138 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99565 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 120.00062 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.46993 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47091 * 120.00053 * 19 17 15 22 22 H 1.48500 * 109.47073 * 240.00094 * 19 17 15 23 23 H 1.09004 * 109.46564 * 299.99924 * 1 2 3 24 24 H 1.09002 * 109.47209 * 59.99110 * 1 2 3 25 25 H 1.08994 * 109.47383 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47470 * 270.30190 * 5 4 3 27 27 H 1.09006 * 109.46921 * 30.30305 * 5 4 3 28 28 H 1.08997 * 109.47100 * 150.29590 * 5 4 3 29 29 H 1.08002 * 119.96261 * 179.70503 * 6 4 3 30 30 H 1.09003 * 109.46881 * 90.00469 * 8 7 6 31 31 H 1.09000 * 109.46871 * 210.00301 * 8 7 6 32 32 H 1.09000 * 109.47085 * 330.00287 * 8 7 6 33 33 H 1.00899 * 110.99846 * 296.04645 * 14 12 11 34 34 H 1.00904 * 111.00080 * 59.99809 * 14 12 11 35 35 H 0.97004 * 119.99884 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3562 1.8325 -1.2012 5 6 2.0094 1.1648 -2.5069 6 6 2.9890 3.0604 -1.2000 7 6 3.3032 3.6768 -0.0030 8 6 3.9884 5.0191 -0.0049 9 6 2.9896 3.0622 1.1976 10 9 3.2979 3.6659 2.3662 11 6 2.3614 1.8292 1.2005 12 6 2.0203 1.1594 2.5065 13 1 1.7844 0.1106 2.3264 14 7 3.1674 1.2535 3.4194 15 6 0.8284 1.8431 3.1255 16 1 0.3642 2.6788 2.6231 17 6 0.3300 1.4011 4.3327 18 7 0.8951 0.3831 4.9442 19 14 -1.1478 2.2481 5.0995 20 1 -1.5941 3.3578 4.2193 21 1 -2.2519 1.2682 5.2599 22 1 -0.7717 2.7922 6.4291 23 1 -0.3632 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 2.8394 0.5334 -2.8239 27 1 1.1167 0.5531 -2.3763 28 1 1.8211 1.9251 -3.2650 29 1 3.2345 3.5416 -2.1352 30 1 3.2382 5.8099 -0.0057 31 1 4.6115 5.1102 0.8848 32 1 4.6109 5.1080 -0.8952 33 1 3.9610 0.7472 3.0562 34 1 3.4059 2.2167 3.6024 35 1 0.5442 0.0718 5.7933 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260085432.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:47 Heat of formation + Delta-G solvation = -62.268492 kcal Electronic energy + Delta-G solvation = -19504.266068 eV Core-core repulsion = 16416.939538 eV Total energy + Delta-G solvation = -3087.326530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -48.28986 -39.68939 -36.86051 -34.80155 -32.50134 -31.81503 -30.00978 -27.24629 -26.87199 -25.93754 -24.91716 -22.89711 -20.48197 -19.86440 -17.60004 -17.06892 -16.16367 -15.38032 -14.97281 -14.73044 -14.70526 -14.29490 -13.95246 -13.75256 -13.32263 -13.07000 -12.90335 -12.63218 -12.44630 -12.29851 -11.97311 -11.70904 -11.39781 -11.15007 -10.90366 -10.84110 -10.61572 -10.45943 -9.85706 -9.46608 -9.18179 -8.41478 -7.97297 -7.87791 -6.99828 -5.85954 -4.00892 1.48637 1.70161 3.32142 3.40740 3.43799 3.72765 4.39367 4.50207 4.86025 5.00709 5.14830 5.31528 5.39924 5.48185 5.61177 5.69546 5.73597 5.79238 5.87768 5.96290 6.00457 6.10153 6.22244 6.33704 6.37762 6.52891 6.59893 6.74067 6.89789 7.25414 7.55232 7.90243 8.04360 8.19799 8.67547 9.09973 9.17582 9.66643 11.18341 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.009044 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.099711 B = 3095.206656 C = 3803.608809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.329 6.329 3 C 0.111 3.889 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.108 4.108 7 C -0.131 4.131 8 C -0.107 4.107 9 C 0.103 3.897 10 F -0.127 7.127 11 C -0.120 4.120 12 C 0.258 3.742 13 H 0.060 0.940 14 N -0.815 5.815 15 C -0.528 4.528 16 H 0.050 0.950 17 C 0.085 3.915 18 N -0.843 5.843 19 Si 0.882 3.118 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.125 0.875 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.296 0.704 34 H 0.326 0.674 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 3.910 -12.800 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.245 6.245 3 C 0.067 3.933 4 C -0.119 4.119 5 C -0.159 4.159 6 C -0.126 4.126 7 C -0.131 4.131 8 C -0.164 4.164 9 C 0.083 3.917 10 F -0.106 7.106 11 C -0.124 4.124 12 C 0.148 3.852 13 H 0.078 0.922 14 N -0.343 5.343 15 C -0.567 4.567 16 H 0.068 0.932 17 C -0.122 4.122 18 N -0.477 5.477 19 Si 0.709 3.291 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.087 0.913 24 H 0.053 0.947 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.143 0.857 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.142 0.858 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.413 3.256 -12.019 12.684 hybrid contribution -0.461 1.251 -0.089 1.336 sum 1.952 4.507 -12.108 13.066 Atomic orbital electron populations 1.23012 0.78891 1.02737 1.01302 1.85923 1.19986 1.24430 1.94182 1.18088 0.97981 0.86721 0.90546 1.20153 1.01492 0.95129 0.95114 1.20615 1.01980 0.99972 0.93367 1.20375 1.00821 0.94802 0.96588 1.19866 1.02976 0.98197 0.92110 1.20640 0.99812 0.93259 1.02654 1.17173 1.01595 0.92211 0.80679 1.91341 1.90795 1.82530 1.45912 1.22259 0.96095 0.93388 1.00697 1.18166 0.90220 0.96266 0.80502 0.92219 1.59246 1.07348 1.17883 1.49872 1.20780 1.12555 1.17070 1.06290 0.93196 1.24918 0.95972 0.94605 0.96664 1.70124 1.38330 1.24028 1.15226 0.86732 0.83117 0.79704 0.79533 1.19937 1.21047 1.20944 0.91273 0.94676 0.89485 0.91386 0.91521 0.92084 0.85681 0.91302 0.91439 0.91579 0.89446 0.85753 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.76 101.05 1.09 1.68 16 2 O -0.33 -6.47 8.48 -19.41 -0.16 -6.64 16 3 C 0.11 2.21 5.67 -39.22 -0.22 1.99 16 4 C -0.12 -1.95 5.89 -104.46 -0.62 -2.56 16 5 C -0.10 -1.32 9.79 36.00 0.35 -0.97 16 6 C -0.11 -1.64 9.35 -39.61 -0.37 -2.01 16 7 C -0.13 -2.19 5.89 -104.53 -0.62 -2.81 16 8 C -0.11 -1.41 9.83 36.01 0.35 -1.06 16 9 C 0.10 2.11 6.95 -39.44 -0.27 1.84 16 10 F -0.13 -2.73 13.52 2.25 0.03 -2.70 16 11 C -0.12 -2.67 4.89 -104.41 -0.51 -3.18 16 12 C 0.26 6.63 2.66 -70.02 -0.19 6.44 16 13 H 0.06 1.69 7.14 -51.93 -0.37 1.32 16 14 N -0.81 -20.55 8.42 -6.65 -0.06 -20.60 16 15 C -0.53 -14.67 8.46 -34.44 -0.29 -14.96 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 17 C 0.09 2.41 5.39 -17.82 -0.10 2.31 16 18 N -0.84 -24.80 12.77 55.43 0.71 -24.09 16 19 Si 0.88 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H 0.07 1.36 7.97 -51.93 -0.41 0.95 16 24 H 0.03 0.51 7.23 -51.93 -0.38 0.13 16 25 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.86 6.30 -51.93 -0.33 0.53 16 28 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 29 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.90 7.63 -51.93 -0.40 0.51 16 32 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.30 6.81 9.06 -39.29 -0.36 6.46 16 34 H 0.33 8.07 6.13 -39.29 -0.24 7.82 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 295.74 15.07 4.46 4.46 Total: -1.00 -30.82 295.74 -5.99 -36.81 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -4.55 Total: 9.56 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -1.39 Total: -13.30 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.65 Total: -44.69 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.16 Total: -6.64 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.03 Total: -2.70 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.82 -5.99 -36.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085432.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.456 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds