Wall clock time and date at job start Mon Mar 30 2020 07:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 117.00448 * 2 1 4 4 C 1.38771 * 120.04536 * 270.28194 * 3 2 1 5 5 C 1.50696 * 120.00451 * 359.97438 * 4 3 2 6 6 C 1.38135 * 119.99288 * 180.29914 * 4 3 2 7 7 C 1.38258 * 120.07909 * 359.41944 * 6 4 3 8 8 C 1.50704 * 119.95556 * 180.25723 * 7 6 4 9 9 C 1.38471 * 120.08380 * 0.28253 * 7 6 4 10 10 F 1.35100 * 119.99714 * 179.97438 * 9 7 6 11 11 C 1.38384 * 120.00830 * 0.02562 * 9 7 6 12 12 C 1.50693 * 120.04273 * 179.97438 * 11 9 7 13 13 H 1.08998 * 109.47761 * 194.99933 * 12 11 9 14 14 N 1.46904 * 109.47226 * 315.00303 * 12 11 9 15 15 C 1.50703 * 109.46985 * 74.99901 * 12 11 9 16 16 H 1.07995 * 120.00054 * 0.02562 * 15 12 11 17 17 C 1.37885 * 120.00138 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99565 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 120.00062 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.46993 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47091 * 120.00053 * 19 17 15 22 22 H 1.48500 * 109.47073 * 240.00094 * 19 17 15 23 23 H 1.09004 * 109.46564 * 299.99924 * 1 2 3 24 24 H 1.09002 * 109.47209 * 59.99110 * 1 2 3 25 25 H 1.08994 * 109.47383 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47470 * 270.30190 * 5 4 3 27 27 H 1.09006 * 109.46921 * 30.30305 * 5 4 3 28 28 H 1.08997 * 109.47100 * 150.29590 * 5 4 3 29 29 H 1.08002 * 119.96261 * 179.70503 * 6 4 3 30 30 H 1.09003 * 109.46881 * 90.00469 * 8 7 6 31 31 H 1.09000 * 109.46871 * 210.00301 * 8 7 6 32 32 H 1.09000 * 109.47085 * 330.00287 * 8 7 6 33 33 H 1.00899 * 110.99846 * 296.04645 * 14 12 11 34 34 H 1.00904 * 111.00080 * 59.99809 * 14 12 11 35 35 H 0.97004 * 119.99884 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3562 1.8325 -1.2012 5 6 2.0094 1.1648 -2.5069 6 6 2.9890 3.0604 -1.2000 7 6 3.3032 3.6768 -0.0030 8 6 3.9884 5.0191 -0.0049 9 6 2.9896 3.0622 1.1976 10 9 3.2979 3.6659 2.3662 11 6 2.3614 1.8292 1.2005 12 6 2.0203 1.1594 2.5065 13 1 1.7844 0.1106 2.3264 14 7 3.1674 1.2535 3.4194 15 6 0.8284 1.8431 3.1255 16 1 0.3642 2.6788 2.6231 17 6 0.3300 1.4011 4.3327 18 7 0.8951 0.3831 4.9442 19 14 -1.1478 2.2481 5.0995 20 1 -1.5941 3.3578 4.2193 21 1 -2.2519 1.2682 5.2599 22 1 -0.7717 2.7922 6.4291 23 1 -0.3632 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 2.8394 0.5334 -2.8239 27 1 1.1167 0.5531 -2.3763 28 1 1.8211 1.9251 -3.2650 29 1 3.2345 3.5416 -2.1352 30 1 3.2382 5.8099 -0.0057 31 1 4.6115 5.1102 0.8848 32 1 4.6109 5.1080 -0.8952 33 1 3.9610 0.7472 3.0562 34 1 3.4059 2.2167 3.6024 35 1 0.5442 0.0718 5.7933 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260085432.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:47 Heat of formation + Delta-G solvation = -82.909454 kcal Electronic energy + Delta-G solvation = -19505.161127 eV Core-core repulsion = 16416.939538 eV Total energy + Delta-G solvation = -3088.221589 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.86438 -41.11030 -38.25108 -36.67906 -33.84391 -33.68278 -31.64679 -28.58580 -28.31881 -27.69295 -26.30866 -24.64553 -21.86292 -21.50529 -19.05882 -18.84950 -17.98209 -16.86938 -16.69568 -16.48609 -16.24986 -15.85515 -15.50202 -15.39943 -14.62466 -14.43569 -14.35790 -14.08721 -13.88051 -13.55148 -13.33412 -13.09358 -12.90969 -12.77398 -12.60903 -12.45575 -12.22381 -12.10302 -11.62276 -11.23571 -10.92564 -10.58638 -9.52004 -9.24102 -8.93396 -8.01536 -6.23120 0.10746 0.28071 1.36324 1.38799 1.49138 2.33518 2.44064 3.00123 3.21398 3.48462 3.82802 3.90500 3.98791 4.31153 4.39646 4.43913 4.51859 4.60298 4.69571 4.75418 4.77758 4.84509 4.88536 4.96408 5.04730 5.17390 5.35109 5.38169 5.49242 5.59700 5.69513 5.86852 6.10567 6.58499 6.61392 7.05818 7.17542 7.47794 9.02470 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.009044 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.099711 B = 3095.206656 C = 3803.608809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.345 6.345 3 C 0.089 3.911 4 C -0.111 4.111 5 C -0.101 4.101 6 C -0.093 4.093 7 C -0.124 4.124 8 C -0.106 4.106 9 C 0.073 3.927 10 F -0.142 7.142 11 C -0.156 4.156 12 C 0.268 3.732 13 H 0.021 0.979 14 N -0.827 5.827 15 C -0.534 4.534 16 H 0.037 0.963 17 C 0.035 3.965 18 N -0.878 5.878 19 Si 0.947 3.053 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.282 1.282 23 H 0.031 0.969 24 H 0.063 0.937 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.175 0.825 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.304 0.696 34 H 0.327 0.673 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.787 5.445 -15.648 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.262 6.262 3 C 0.045 3.955 4 C -0.112 4.112 5 C -0.157 4.157 6 C -0.111 4.111 7 C -0.125 4.125 8 C -0.162 4.162 9 C 0.054 3.946 10 F -0.121 7.121 11 C -0.160 4.160 12 C 0.158 3.842 13 H 0.039 0.961 14 N -0.357 5.357 15 C -0.572 4.572 16 H 0.055 0.945 17 C -0.168 4.168 18 N -0.513 5.513 19 Si 0.772 3.228 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.208 1.208 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.126 0.874 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.192 0.808 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.144 0.856 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.404 4.796 -14.883 15.820 hybrid contribution -0.424 0.770 0.682 1.113 sum 1.980 5.566 -14.200 15.380 Atomic orbital electron populations 1.23080 0.77933 1.04035 1.00746 1.85888 1.21089 1.24978 1.94253 1.18375 0.98848 0.87068 0.91242 1.20582 1.00007 0.95323 0.95286 1.20717 1.02281 1.00855 0.91897 1.20954 0.98454 0.93891 0.97781 1.20319 1.01775 0.99387 0.91055 1.20744 1.00173 0.91216 1.04065 1.17499 1.03181 0.92322 0.81635 1.91284 1.91128 1.82657 1.47059 1.21934 0.99208 0.94976 0.99837 1.17683 0.89728 0.94214 0.82600 0.96134 1.59126 1.07681 1.18120 1.50727 1.20961 1.13342 1.16515 1.06432 0.94472 1.25675 0.98714 0.95257 0.97204 1.70251 1.40026 1.25443 1.15614 0.85714 0.79936 0.78780 0.78373 1.19596 1.20015 1.20753 0.95064 0.91825 0.87363 0.90094 0.91856 0.88796 0.80812 0.90167 0.92224 0.88036 0.88532 0.85632 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.23 10.76 113.37 1.22 2.45 16 2 O -0.34 -13.83 8.48 -92.36 -0.78 -14.61 16 3 C 0.09 3.54 5.67 22.50 0.13 3.67 16 4 C -0.11 -3.36 5.89 -19.76 -0.12 -3.47 16 5 C -0.10 -2.18 9.79 71.23 0.70 -1.48 16 6 C -0.09 -2.44 9.35 22.25 0.21 -2.24 16 7 C -0.12 -3.88 5.89 -19.80 -0.12 -4.00 16 8 C -0.11 -2.43 9.83 71.24 0.70 -1.73 16 9 C 0.07 3.01 6.95 22.36 0.16 3.17 16 10 F -0.14 -6.29 13.52 44.97 0.61 -5.68 16 11 C -0.16 -7.11 4.89 -19.73 -0.10 -7.21 16 12 C 0.27 14.46 2.66 43.42 0.12 14.58 16 13 H 0.02 1.25 7.14 -2.39 -0.02 1.24 16 14 N -0.83 -43.83 8.42 -174.95 -1.47 -45.31 16 15 C -0.53 -30.94 8.46 25.60 0.22 -30.72 16 16 H 0.04 2.19 7.74 -2.91 -0.02 2.16 16 17 C 0.04 2.04 5.39 84.66 0.46 2.50 16 18 N -0.88 -53.51 12.77 21.45 0.27 -53.24 16 19 Si 0.95 45.34 29.54 68.60 2.03 47.37 16 20 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 23 H 0.03 1.28 7.97 -2.39 -0.02 1.27 16 24 H 0.06 1.77 7.23 -2.39 -0.02 1.76 16 25 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 1.42 6.30 -2.38 -0.02 1.41 16 28 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 29 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.48 7.63 -2.39 -0.02 1.46 16 32 H 0.10 1.63 8.08 -2.39 -0.02 1.61 16 33 H 0.30 14.81 9.06 -89.69 -0.81 14.00 16 34 H 0.33 16.98 6.13 -89.69 -0.55 16.43 16 35 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -70.47 295.74 3.98 -66.49 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -0.24 Total: 29.45 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 3.57 Total: -24.48 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -1.20 Total: -98.54 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.78 Total: -14.61 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 0.61 Total: -5.68 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -70.47 3.98 -66.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085432.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.420 kcal (2) G-P(sol) polarization free energy of solvation -70.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds