Wall clock time and date at job start Mon Mar 30 2020 07:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46821 * 2 1 4 4 C 1.38768 * 119.99941 * 269.97806 * 3 2 1 5 5 O 1.35893 * 120.04696 * 0.04497 * 4 3 2 6 6 C 1.42905 * 117.00414 * 180.02562 * 5 4 3 7 7 C 1.38675 * 119.91203 * 180.02562 * 4 3 2 8 8 C 1.38388 * 119.91834 * 359.97438 * 7 4 3 9 9 F 1.35103 * 119.99368 * 180.02562 * 8 7 4 10 10 C 1.38475 * 120.00541 * 359.74355 * 8 7 4 11 11 C 1.38126 * 120.00130 * 90.00489 * 3 2 1 12 12 C 1.50699 * 119.96280 * 359.95098 * 11 3 2 13 13 H 1.09001 * 109.46986 * 325.00194 * 12 11 3 14 14 N 1.46896 * 109.47258 * 205.00070 * 12 11 3 15 15 C 1.50701 * 109.47212 * 85.00122 * 12 11 3 16 16 H 1.08000 * 119.99995 * 5.65956 * 15 12 11 17 17 C 1.37874 * 120.00359 * 185.66293 * 15 12 11 18 18 N 1.31508 * 120.00452 * 194.97847 * 17 15 12 19 19 Si 1.86806 * 119.99752 * 14.97335 * 17 15 12 20 20 H 1.48493 * 109.47179 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47204 * 300.00574 * 19 17 15 22 22 H 1.48507 * 109.46893 * 60.00347 * 19 17 15 23 23 H 1.09002 * 109.47291 * 300.00253 * 1 2 3 24 24 H 1.08998 * 109.47539 * 59.99662 * 1 2 3 25 25 H 1.09001 * 109.47432 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46872 * 240.00050 * 2 1 3 27 27 H 1.08997 * 109.46822 * 120.00131 * 2 1 3 28 28 H 1.09000 * 109.46689 * 300.00466 * 6 5 4 29 29 H 1.09003 * 109.47085 * 59.99608 * 6 5 4 30 30 H 1.08996 * 109.47350 * 180.02562 * 6 5 4 31 31 H 1.07997 * 120.03837 * 179.97438 * 7 4 3 32 32 H 1.07997 * 119.95379 * 180.27668 * 10 8 7 33 33 H 1.00902 * 111.00351 * 173.55749 * 14 12 11 34 34 H 1.00902 * 111.00162 * 297.51901 * 14 12 11 35 35 H 0.97002 * 119.99901 * 354.41765 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2639 2.0749 -1.2018 5 8 2.0374 1.4353 -2.3792 6 6 2.2981 2.1696 -3.5771 7 6 2.7266 3.3822 -1.1997 8 6 2.9556 4.0314 0.0009 9 9 3.4059 5.3052 0.0047 10 6 2.7177 3.3775 1.1981 11 6 2.2625 2.0720 1.1962 12 6 2.0102 1.3612 2.5008 13 1 1.1505 0.6997 2.3938 14 7 1.7392 2.3500 3.5528 15 6 3.2244 0.5505 2.8742 16 1 4.1241 0.6209 2.2809 17 6 3.1868 -0.2812 3.9732 18 7 4.3048 -0.7576 4.4760 19 14 1.5478 -0.7314 4.7482 20 1 1.7786 -1.6306 5.9071 21 1 0.8623 0.5028 5.2085 22 1 0.6996 -1.4239 3.7450 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6695 3.0598 -3.6016 29 1 3.3471 2.4648 -3.6013 30 1 2.0761 1.5446 -4.4420 31 1 2.9080 3.8930 -2.1337 32 1 2.8925 3.8864 2.1345 33 1 1.4641 1.8978 4.4119 34 1 2.5371 2.9500 3.6993 35 1 5.1483 -0.5906 4.0271 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260111394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:52 Heat of formation + Delta-G solvation = -69.507424 kcal Electronic energy + Delta-G solvation = -19171.412815 eV Core-core repulsion = 16083.772381 eV Total energy + Delta-G solvation = -3087.640434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -48.51874 -40.00046 -37.63097 -34.54360 -33.41892 -31.90335 -29.30328 -28.80916 -27.22095 -25.80235 -23.44324 -22.65049 -20.82222 -19.81579 -17.82183 -17.57266 -16.76193 -15.84658 -15.72734 -15.18745 -15.04310 -14.63310 -14.25138 -13.93433 -13.69869 -13.15152 -13.01704 -12.53980 -12.24620 -12.22285 -12.04130 -11.66051 -11.44754 -11.35427 -10.85343 -10.62534 -10.42366 -10.27333 -10.19187 -9.99682 -9.34406 -8.57634 -8.20179 -7.72499 -7.59277 -6.55632 -4.30779 1.64556 1.81728 3.21672 3.31349 3.42694 3.47019 4.08674 4.29729 4.64044 5.04790 5.09744 5.12972 5.16719 5.32592 5.43324 5.49754 5.60730 5.70422 5.91750 5.95113 6.06348 6.17119 6.39645 6.42997 6.50153 6.60123 6.68580 6.84007 6.95642 7.09602 7.38264 7.62426 7.72453 8.14737 8.30635 8.43826 8.75729 9.41684 10.75235 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.007980 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.192948 B = 3508.134404 C = 4177.918638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.119 4.119 4 C 0.148 3.852 5 O -0.309 6.309 6 C 0.027 3.973 7 C -0.266 4.266 8 C 0.121 3.879 9 F -0.147 7.147 10 C -0.175 4.175 11 C 0.042 3.958 12 C 0.210 3.790 13 H 0.056 0.944 14 N -0.859 5.859 15 C -0.623 4.623 16 H 0.058 0.942 17 C 0.033 3.967 18 N -0.896 5.896 19 Si 1.043 2.957 20 H -0.283 1.283 21 H -0.273 1.273 22 H -0.278 1.278 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.332 0.668 34 H 0.328 0.672 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 4.938 -11.117 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.120 4.120 4 C 0.103 3.897 5 O -0.223 6.223 6 C -0.068 4.068 7 C -0.285 4.285 8 C 0.102 3.898 9 F -0.126 7.126 10 C -0.194 4.194 11 C 0.041 3.959 12 C 0.101 3.899 13 H 0.073 0.927 14 N -0.391 5.391 15 C -0.662 4.662 16 H 0.077 0.923 17 C -0.174 4.174 18 N -0.529 5.529 19 Si 0.871 3.129 20 H -0.208 1.208 21 H -0.200 1.200 22 H -0.204 1.204 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.037 4.218 -10.363 13.217 hybrid contribution 1.931 0.962 -1.082 2.413 sum -5.106 5.179 -11.445 13.560 Atomic orbital electron populations 1.21701 0.95623 1.01041 1.01527 1.20397 0.95340 0.92246 1.03736 1.19076 1.05920 0.97751 0.89262 1.18430 0.95726 0.89962 0.85566 1.86084 1.82820 1.41111 1.12260 1.23005 1.00743 0.97438 0.85619 1.20824 1.13778 0.96190 0.97753 1.17362 0.99160 0.79125 0.94174 1.91439 1.86903 1.36732 1.97496 1.20864 1.05842 0.96142 0.96538 1.19685 0.89807 0.91351 0.95045 1.18366 0.96920 0.89428 0.85194 0.92683 1.59806 1.41971 1.25133 1.12196 1.22527 0.98965 1.28728 1.16013 0.92339 1.25818 1.03723 0.93374 0.94462 1.70835 0.98810 1.46037 1.37227 0.84034 0.74739 0.77183 0.76984 1.20833 1.19997 1.20356 0.92612 0.93268 0.92889 0.91559 0.88829 0.92913 0.92900 0.88536 0.85262 0.84690 0.85284 0.86035 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.77 37.16 0.36 -1.93 16 2 C -0.08 -1.49 5.16 -27.88 -0.14 -1.63 16 3 C -0.12 -2.34 5.15 -104.46 -0.54 -2.88 16 4 C 0.15 2.63 6.66 -39.22 -0.26 2.37 16 5 O -0.31 -4.80 9.54 -19.40 -0.19 -4.99 16 6 C 0.03 0.29 9.81 101.05 0.99 1.28 16 7 C -0.27 -4.49 9.02 -39.36 -0.35 -4.85 16 8 C 0.12 2.23 7.30 -39.44 -0.29 1.95 16 9 F -0.15 -2.60 17.27 2.25 0.04 -2.56 16 10 C -0.17 -3.49 9.25 -39.49 -0.37 -3.86 16 11 C 0.04 0.89 4.99 -104.66 -0.52 0.37 16 12 C 0.21 4.77 1.80 -70.02 -0.13 4.64 16 13 H 0.06 1.26 4.76 -51.93 -0.25 1.01 16 14 N -0.86 -18.25 8.73 -6.65 -0.06 -18.31 16 15 C -0.62 -16.37 8.22 -34.44 -0.28 -16.65 16 16 H 0.06 1.71 7.99 -52.49 -0.42 1.30 16 17 C 0.03 0.89 5.44 -17.82 -0.10 0.80 16 18 N -0.90 -26.16 13.69 55.43 0.76 -25.41 16 19 Si 1.04 23.44 26.48 -169.99 -4.50 18.94 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.27 -5.59 5.54 56.52 0.31 -5.28 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H 0.05 0.94 7.31 -51.93 -0.38 0.56 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.16 7.53 -51.93 -0.39 0.77 16 27 H 0.09 1.96 6.15 -51.93 -0.32 1.64 16 28 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 29 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.13 1.81 6.30 -52.49 -0.33 1.48 16 32 H 0.14 2.62 6.34 -52.49 -0.33 2.29 16 33 H 0.33 7.06 5.53 -39.29 -0.22 6.84 16 34 H 0.33 6.79 7.32 -39.29 -0.29 6.51 16 35 H 0.27 7.95 8.73 -40.82 -0.36 7.60 16 LS Contribution 285.71 15.07 4.31 4.31 Total: -1.00 -28.58 285.71 -5.49 -34.08 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -4.23 Total: 14.33 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -1.62 Total: -20.39 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.70 Total: -43.72 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.19 Total: -4.99 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.50 Total: 18.94 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.58 -5.49 -34.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260111394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.431 kcal (2) G-P(sol) polarization free energy of solvation -28.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds