Wall clock time and date at job start Mon Mar 30 2020 07:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46821 * 2 1 4 4 C 1.38768 * 119.99941 * 269.97806 * 3 2 1 5 5 O 1.35893 * 120.04696 * 0.04497 * 4 3 2 6 6 C 1.42905 * 117.00414 * 180.02562 * 5 4 3 7 7 C 1.38675 * 119.91203 * 180.02562 * 4 3 2 8 8 C 1.38388 * 119.91834 * 359.97438 * 7 4 3 9 9 F 1.35103 * 119.99368 * 180.02562 * 8 7 4 10 10 C 1.38475 * 120.00541 * 359.74355 * 8 7 4 11 11 C 1.38126 * 120.00130 * 90.00489 * 3 2 1 12 12 C 1.50699 * 119.96280 * 359.95098 * 11 3 2 13 13 H 1.09001 * 109.46986 * 325.00194 * 12 11 3 14 14 N 1.46896 * 109.47258 * 205.00070 * 12 11 3 15 15 C 1.50701 * 109.47212 * 85.00122 * 12 11 3 16 16 H 1.08000 * 119.99995 * 5.65956 * 15 12 11 17 17 C 1.37874 * 120.00359 * 185.66293 * 15 12 11 18 18 N 1.31508 * 120.00452 * 194.97847 * 17 15 12 19 19 Si 1.86806 * 119.99752 * 14.97335 * 17 15 12 20 20 H 1.48493 * 109.47179 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47204 * 300.00574 * 19 17 15 22 22 H 1.48507 * 109.46893 * 60.00347 * 19 17 15 23 23 H 1.09002 * 109.47291 * 300.00253 * 1 2 3 24 24 H 1.08998 * 109.47539 * 59.99662 * 1 2 3 25 25 H 1.09001 * 109.47432 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46872 * 240.00050 * 2 1 3 27 27 H 1.08997 * 109.46822 * 120.00131 * 2 1 3 28 28 H 1.09000 * 109.46689 * 300.00466 * 6 5 4 29 29 H 1.09003 * 109.47085 * 59.99608 * 6 5 4 30 30 H 1.08996 * 109.47350 * 180.02562 * 6 5 4 31 31 H 1.07997 * 120.03837 * 179.97438 * 7 4 3 32 32 H 1.07997 * 119.95379 * 180.27668 * 10 8 7 33 33 H 1.00902 * 111.00351 * 173.55749 * 14 12 11 34 34 H 1.00902 * 111.00162 * 297.51901 * 14 12 11 35 35 H 0.97002 * 119.99901 * 354.41765 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2639 2.0749 -1.2018 5 8 2.0374 1.4353 -2.3792 6 6 2.2981 2.1696 -3.5771 7 6 2.7266 3.3822 -1.1997 8 6 2.9556 4.0314 0.0009 9 9 3.4059 5.3052 0.0047 10 6 2.7177 3.3775 1.1981 11 6 2.2625 2.0720 1.1962 12 6 2.0102 1.3612 2.5008 13 1 1.1505 0.6997 2.3938 14 7 1.7392 2.3500 3.5528 15 6 3.2244 0.5505 2.8742 16 1 4.1241 0.6209 2.2809 17 6 3.1868 -0.2812 3.9732 18 7 4.3048 -0.7576 4.4760 19 14 1.5478 -0.7314 4.7482 20 1 1.7786 -1.6306 5.9071 21 1 0.8623 0.5028 5.2085 22 1 0.6996 -1.4239 3.7450 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6695 3.0598 -3.6016 29 1 3.3471 2.4648 -3.6013 30 1 2.0761 1.5446 -4.4420 31 1 2.9080 3.8930 -2.1337 32 1 2.8925 3.8864 2.1345 33 1 1.4641 1.8978 4.4119 34 1 2.5371 2.9500 3.6993 35 1 5.1483 -0.5906 4.0271 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260111394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:51 Heat of formation + Delta-G solvation = -88.553917 kcal Electronic energy + Delta-G solvation = -19172.238733 eV Core-core repulsion = 16083.772381 eV Total energy + Delta-G solvation = -3088.466352 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.94265 -41.35717 -39.01870 -36.27473 -34.85336 -33.88829 -30.80195 -30.10745 -28.46082 -27.52551 -24.94340 -24.23481 -22.28942 -21.36349 -19.85571 -18.99616 -18.15850 -17.32836 -16.96048 -16.59792 -16.32366 -16.24749 -15.67631 -15.47289 -15.14807 -14.92476 -14.53132 -14.17636 -13.93832 -13.57123 -13.54499 -13.09385 -12.67838 -12.56897 -12.40296 -12.18415 -11.96974 -11.76314 -11.69672 -11.59002 -11.27956 -10.64116 -9.73497 -9.48251 -9.10523 -8.66766 -6.48022 0.17320 0.36145 1.42452 1.50925 1.69056 2.28249 2.41470 2.60122 3.01794 3.22755 3.73179 3.86401 3.97772 4.14160 4.17983 4.34441 4.39494 4.46933 4.53141 4.62815 4.68726 4.72513 4.95906 5.00402 5.10928 5.13387 5.16027 5.40275 5.45652 5.60057 5.76157 5.83948 5.94707 6.37939 6.38735 6.53159 6.77662 7.32757 8.56542 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.007980 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.192948 B = 3508.134404 C = 4177.918638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 C -0.135 4.135 4 C 0.154 3.846 5 O -0.318 6.318 6 C 0.014 3.986 7 C -0.254 4.254 8 C 0.117 3.883 9 F -0.142 7.142 10 C -0.191 4.191 11 C 0.014 3.986 12 C 0.219 3.781 13 H 0.058 0.942 14 N -0.848 5.848 15 C -0.614 4.614 16 H 0.013 0.987 17 C -0.013 4.013 18 N -0.930 5.930 19 Si 1.078 2.922 20 H -0.290 1.290 21 H -0.239 1.239 22 H -0.258 1.258 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.125 0.875 31 H 0.164 0.836 32 H 0.132 0.868 33 H 0.333 0.667 34 H 0.330 0.670 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 5.724 -12.964 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C -0.137 4.137 4 C 0.108 3.892 5 O -0.232 6.232 6 C -0.080 4.080 7 C -0.273 4.273 8 C 0.098 3.902 9 F -0.121 7.121 10 C -0.210 4.210 11 C 0.013 3.987 12 C 0.109 3.891 13 H 0.076 0.924 14 N -0.379 5.379 15 C -0.653 4.653 16 H 0.031 0.969 17 C -0.213 4.213 18 N -0.565 5.565 19 Si 0.899 3.101 20 H -0.216 1.216 21 H -0.164 1.164 22 H -0.183 1.183 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.181 0.819 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.935 5.034 -12.243 15.971 hybrid contribution 2.605 0.767 -0.708 2.806 sum -6.330 5.801 -12.951 15.539 Atomic orbital electron populations 1.21657 0.93572 1.02324 1.01685 1.20354 0.97128 0.91545 1.02494 1.19264 1.06276 0.98284 0.89835 1.18396 0.94712 0.90035 0.86039 1.86084 1.82427 1.41986 1.12662 1.23419 1.01695 0.98551 0.84299 1.21127 1.11880 0.95801 0.98480 1.17392 0.99179 0.79349 0.94262 1.91449 1.86821 1.36339 1.97486 1.20888 1.06662 0.96100 0.97351 1.19594 0.92059 0.92130 0.94903 1.18172 0.95023 0.89410 0.86545 0.92417 1.59766 1.41840 1.24394 1.11934 1.22599 0.98851 1.28803 1.15074 0.96852 1.27194 1.05907 0.92873 0.95314 1.70976 0.98912 1.48329 1.38286 0.83627 0.71478 0.78453 0.76540 1.21574 1.16393 1.18312 0.93475 0.91993 0.91071 0.90807 0.91928 0.91414 0.92067 0.85643 0.81901 0.85006 0.85206 0.85795 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.77 71.98 0.70 -3.40 16 2 C -0.08 -2.84 5.16 29.85 0.15 -2.69 16 3 C -0.14 -5.24 5.15 -19.76 -0.10 -5.34 16 4 C 0.15 5.15 6.66 22.50 0.15 5.30 16 5 O -0.32 -8.91 9.54 -92.34 -0.88 -9.79 16 6 C 0.01 0.25 9.81 113.37 1.11 1.36 16 7 C -0.25 -7.89 9.02 22.41 0.20 -7.69 16 8 C 0.12 4.16 7.30 22.36 0.16 4.32 16 9 F -0.14 -4.78 17.27 44.97 0.78 -4.00 16 10 C -0.19 -7.59 9.25 22.33 0.21 -7.38 16 11 C 0.01 0.60 4.99 -19.89 -0.10 0.50 16 12 C 0.22 9.93 1.80 43.42 0.08 10.01 16 13 H 0.06 2.60 4.76 -2.39 -0.01 2.59 16 14 N -0.85 -35.48 8.73 -174.96 -1.53 -37.01 16 15 C -0.61 -33.32 8.22 25.60 0.21 -33.11 16 16 H 0.01 0.82 7.99 -2.91 -0.02 0.79 16 17 C -0.01 -0.73 5.44 84.65 0.46 -0.27 16 18 N -0.93 -56.33 13.69 21.45 0.29 -56.04 16 19 Si 1.08 46.76 26.48 68.60 1.82 48.57 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 21 H -0.24 -9.01 5.54 99.48 0.55 -8.46 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 H 0.05 1.50 7.31 -2.39 -0.02 1.48 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 2.51 7.53 -2.39 -0.02 2.50 16 27 H 0.06 2.65 6.15 -2.39 -0.01 2.64 16 28 H 0.07 1.01 7.66 -2.39 -0.02 0.99 16 29 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 30 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.16 3.88 6.30 -2.91 -0.02 3.86 16 32 H 0.13 5.16 6.34 -2.91 -0.02 5.15 16 33 H 0.33 13.65 5.53 -89.69 -0.50 13.15 16 34 H 0.33 13.68 7.32 -89.69 -0.66 13.03 16 35 H 0.25 15.70 8.73 -92.71 -0.81 14.89 16 Total: -1.00 -63.44 285.71 3.50 -59.93 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: -0.21 Total: 36.72 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: 3.24 Total: -38.39 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -1.23 Total: -93.04 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.88 Total: -9.79 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.78 Total: -4.00 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.82 Total: 48.57 kcal Total: -63.44 3.50 -59.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260111394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.622 kcal (2) G-P(sol) polarization free energy of solvation -63.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds