Wall clock time and date at job start Mon Mar 30 2020 06:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35946 * 116.99438 * 2 1 4 4 C 1.38731 * 120.03091 * 0.02622 * 3 2 1 5 5 C 1.38128 * 119.97043 * 179.97438 * 4 3 2 6 6 C 1.38482 * 120.02827 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.97160 * 180.02562 * 6 5 4 8 8 C 1.38438 * 120.06171 * 359.79488 * 6 5 4 9 9 C 1.50691 * 119.98514 * 180.22960 * 8 6 5 10 10 C 1.38173 * 120.02692 * 0.45413 * 8 6 5 11 11 C 1.50697 * 120.01364 * 179.79575 * 10 8 6 12 12 H 1.09001 * 109.47321 * 12.26611 * 11 10 8 13 13 N 1.46895 * 109.47208 * 132.26984 * 11 10 8 14 14 C 1.53005 * 109.46927 * 252.27080 * 11 10 8 15 15 C 1.50705 * 109.47038 * 175.00210 * 14 11 10 16 16 H 1.08002 * 119.99682 * 359.97438 * 15 14 11 17 17 C 1.37877 * 119.99891 * 179.97438 * 15 14 11 18 18 N 1.31515 * 120.00150 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99695 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46906 * 60.00119 * 19 17 15 21 21 H 1.48502 * 109.46722 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47056 * 299.99886 * 19 17 15 23 23 H 1.08999 * 109.47131 * 299.99160 * 1 2 3 24 24 H 1.09000 * 109.47622 * 60.00191 * 1 2 3 25 25 H 1.09010 * 109.46728 * 179.97438 * 1 2 3 26 26 H 1.07996 * 120.01745 * 359.95501 * 4 3 2 27 27 H 1.07993 * 119.98731 * 180.02562 * 5 4 3 28 28 H 1.08994 * 109.47544 * 264.30305 * 9 8 6 29 29 H 1.09000 * 109.47613 * 24.30723 * 9 8 6 30 30 H 1.09005 * 109.47021 * 144.29996 * 9 8 6 31 31 H 1.00902 * 111.00164 * 60.00171 * 13 11 10 32 32 H 1.00906 * 111.00078 * 183.95166 * 13 11 10 33 33 H 1.08999 * 109.47576 * 54.99780 * 14 11 10 34 34 H 1.09001 * 109.47218 * 294.99936 * 14 11 10 35 35 H 0.96999 * 119.99997 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9193 3.6053 0.0011 6 6 3.3022 3.6771 0.0016 7 9 3.9155 4.8809 0.0027 8 6 4.0569 2.5166 0.0059 9 6 5.5617 2.5968 0.0117 10 6 3.4310 1.2848 0.0002 11 6 4.2529 0.0216 0.0002 12 1 5.2919 0.2641 0.2233 13 7 3.7350 -0.8995 1.0205 14 6 4.1683 -0.6418 -1.3760 15 6 5.0859 -1.8367 -1.4148 16 1 5.6712 -2.0965 -0.5451 17 6 5.1782 -2.5980 -2.5606 18 7 4.4651 -2.2818 -3.6195 19 14 6.3162 -4.0786 -2.6090 20 1 5.9076 -5.0513 -1.5639 21 1 6.2331 -4.7233 -3.9442 22 1 7.7120 -3.6386 -2.3572 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 0.2125 2.3195 0.0002 27 1 1.3318 4.5114 0.0019 28 1 5.9340 2.5131 -1.0093 29 1 5.8731 3.5518 0.4348 30 1 5.9666 1.7834 0.6139 31 1 2.7726 -1.1398 0.8358 32 1 4.3083 -1.7274 1.0848 33 1 4.4688 0.0722 -2.1427 34 1 3.1438 -0.9644 -1.5615 35 1 4.5298 -2.8177 -4.4254 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260127230.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:57 Heat of formation + Delta-G solvation = -88.831853 kcal Electronic energy + Delta-G solvation = -19055.200654 eV Core-core repulsion = 15966.722251 eV Total energy + Delta-G solvation = -3088.478404 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.78694 -41.37216 -38.55019 -36.95884 -34.56268 -33.30334 -30.78382 -29.84602 -28.30189 -27.65667 -26.21690 -23.90123 -22.30827 -21.39105 -18.93383 -18.52457 -18.02905 -17.87761 -16.88026 -16.54235 -16.38590 -16.03535 -15.67576 -15.13094 -14.80476 -14.66671 -14.18207 -14.10734 -13.92476 -13.77371 -13.51839 -13.03526 -12.93722 -12.74530 -12.64223 -12.59106 -12.23923 -11.82350 -11.67187 -11.60135 -11.01324 -10.57698 -9.82423 -9.29244 -8.92689 -8.19144 -6.31007 0.19934 0.28462 1.40193 1.42589 1.50191 2.38721 2.40589 2.58119 3.13613 3.30701 3.67877 3.77201 4.02816 4.13264 4.31037 4.36488 4.44612 4.47187 4.55167 4.72750 4.75646 4.78037 4.83449 4.94535 5.13413 5.17652 5.24644 5.35315 5.42219 5.67597 5.78645 5.84758 6.19238 6.45952 6.52133 6.84868 6.89575 7.38125 8.91813 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023010 B = 0.006781 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.548743 B = 4127.917009 C = 4805.833103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.123 3.877 4 C -0.185 4.185 5 C -0.112 4.112 6 C 0.040 3.960 7 F -0.144 7.144 8 C -0.091 4.091 9 C -0.115 4.115 10 C -0.094 4.094 11 C 0.143 3.857 12 H 0.078 0.922 13 N -0.830 5.830 14 C 0.018 3.982 15 C -0.536 4.536 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.963 3.037 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.268 1.268 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.110 0.890 26 H 0.168 0.832 27 H 0.167 0.833 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.342 0.658 32 H 0.339 0.661 33 H -0.022 1.022 34 H -0.002 1.002 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.309 8.933 8.278 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.077 3.923 4 C -0.204 4.204 5 C -0.130 4.130 6 C 0.021 3.979 7 F -0.123 7.123 8 C -0.093 4.093 9 C -0.171 4.171 10 C -0.095 4.095 11 C 0.031 3.969 12 H 0.096 0.904 13 N -0.362 5.362 14 C -0.021 4.021 15 C -0.574 4.574 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.571 5.571 19 Si 0.788 3.212 20 H -0.190 1.190 21 H -0.213 1.213 22 H -0.193 1.193 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.129 0.871 26 H 0.186 0.814 27 H 0.184 0.816 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.159 0.841 32 H 0.152 0.848 33 H -0.003 1.003 34 H 0.017 0.983 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.118 9.313 8.632 14.557 hybrid contribution 0.316 -1.160 -1.418 1.859 sum -6.802 8.153 7.214 12.836 Atomic orbital electron populations 1.23375 0.76689 1.05386 1.02403 1.86049 1.23266 1.26481 1.88172 1.19014 0.91471 0.85463 0.96319 1.21318 1.01561 0.90332 1.07147 1.21129 0.91844 0.99666 1.00389 1.17448 0.91436 0.79661 1.09369 1.91422 1.83586 1.42643 1.94612 1.19720 0.97764 0.90825 1.00973 1.20794 0.89499 1.03746 1.03041 1.19236 0.91799 0.94925 1.03539 1.20206 0.96475 0.88933 0.91237 0.90434 1.59344 1.08187 1.20200 1.48519 1.19570 0.95693 0.94266 0.92576 1.21534 1.24998 1.11918 0.98928 0.91737 1.25932 0.97393 1.00887 0.95278 1.70115 1.42320 1.40985 1.03708 0.85528 0.79305 0.79102 0.77256 1.18971 1.21262 1.19321 0.90485 0.91949 0.87138 0.81440 0.81565 0.91077 0.89773 0.90353 0.84147 0.84821 1.00318 0.98345 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -11.06 6.59 -92.94 -0.61 -11.67 16 3 C 0.12 4.27 6.44 22.49 0.14 4.42 16 4 C -0.19 -4.96 9.04 22.36 0.20 -4.76 16 5 C -0.11 -2.91 10.02 22.30 0.22 -2.69 16 6 C 0.04 1.25 7.24 22.38 0.16 1.42 16 7 F -0.14 -4.32 16.38 44.97 0.74 -3.58 16 8 C -0.09 -3.23 5.88 -19.83 -0.12 -3.34 16 9 C -0.11 -3.65 9.22 71.23 0.66 -2.99 16 10 C -0.09 -3.65 4.96 -19.77 -0.10 -3.75 16 11 C 0.14 6.20 2.67 44.17 0.12 6.32 16 12 H 0.08 3.35 5.57 -2.39 -0.01 3.34 16 13 N -0.83 -33.36 9.10 -171.81 -1.56 -34.93 16 14 C 0.02 0.94 4.48 29.85 0.13 1.07 16 15 C -0.54 -29.85 8.55 25.60 0.22 -29.63 16 16 H 0.06 3.40 7.15 -2.91 -0.02 3.38 16 17 C 0.00 0.18 5.46 84.65 0.46 0.64 16 18 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 19 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H 0.08 1.28 7.66 -2.39 -0.02 1.27 16 24 H 0.06 1.23 7.66 -2.39 -0.02 1.22 16 25 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 26 H 0.17 3.18 6.30 -2.91 -0.02 3.16 16 27 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.08 2.29 7.48 -2.39 -0.02 2.28 16 30 H 0.08 2.50 6.24 -2.38 -0.01 2.48 16 31 H 0.34 13.66 6.07 -89.69 -0.54 13.12 16 32 H 0.34 13.68 7.90 -89.69 -0.71 12.97 16 33 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 34 H 0.00 -0.10 7.32 -2.39 -0.02 -0.12 16 35 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -67.04 290.12 3.97 -63.07 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -0.12 Total: 29.41 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 3.22 Total: -31.84 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -1.28 Total: -91.36 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.61 Total: -11.67 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.74 Total: -3.58 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -67.04 3.97 -63.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260127230.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.761 kcal (2) G-P(sol) polarization free energy of solvation -67.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds