Wall clock time and date at job start Mon Mar 30 2020 06:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35945 * 116.99604 * 2 1 4 4 C 1.38726 * 120.03512 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.97391 * 179.97438 * 4 3 2 6 6 C 1.38482 * 120.02804 * 0.03030 * 5 4 3 7 7 F 1.35100 * 119.96919 * 180.27306 * 6 5 4 8 8 C 1.38437 * 120.06124 * 359.97438 * 6 5 4 9 9 C 1.50692 * 119.98481 * 180.02562 * 8 6 5 10 10 C 1.38173 * 120.02639 * 359.97438 * 8 6 5 11 11 C 1.50699 * 120.01254 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.47204 * 347.44902 * 11 10 8 13 13 N 1.46901 * 109.47191 * 227.45196 * 11 10 8 14 14 C 1.52994 * 109.47421 * 107.44785 * 11 10 8 15 15 C 1.50706 * 109.47406 * 184.99765 * 14 11 10 16 16 H 1.08001 * 119.99784 * 0.02562 * 15 14 11 17 17 C 1.37872 * 119.99900 * 180.02562 * 15 14 11 18 18 N 1.31515 * 120.00158 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99726 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47496 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47097 * 120.00345 * 19 17 15 22 22 H 1.48496 * 109.47269 * 240.00049 * 19 17 15 23 23 H 1.09000 * 109.47146 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47483 * 300.00196 * 1 2 3 25 25 H 1.08998 * 109.47152 * 60.00028 * 1 2 3 26 26 H 1.07998 * 120.01037 * 359.96584 * 4 3 2 27 27 H 1.07998 * 119.99155 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.47597 * 95.91689 * 9 8 6 29 29 H 1.09001 * 109.47306 * 215.91823 * 9 8 6 30 30 H 1.08997 * 109.47247 * 335.91657 * 9 8 6 31 31 H 1.00904 * 111.00152 * 176.04198 * 13 11 10 32 32 H 1.00901 * 110.99861 * 299.99806 * 13 11 10 33 33 H 1.08995 * 109.47580 * 305.00291 * 14 11 10 34 34 H 1.09009 * 109.47100 * 65.00082 * 14 11 10 35 35 H 0.97005 * 119.99738 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2912 2.3752 0.0005 5 6 1.9195 3.6053 0.0011 6 6 3.3024 3.6770 0.0004 7 9 3.9158 4.8808 0.0065 8 6 4.0571 2.5164 -0.0002 9 6 5.5619 2.5965 -0.0003 10 6 3.4310 1.2847 0.0003 11 6 4.2528 0.0215 0.0002 12 1 5.2917 0.2638 -0.2236 13 7 3.7344 -0.8999 -1.0197 14 6 4.1690 -0.6416 1.3765 15 6 5.0866 -1.8365 1.4151 16 1 5.6714 -2.0967 0.5452 17 6 5.1795 -2.5976 2.5610 18 7 4.4670 -2.2811 3.6202 19 14 6.3174 -4.0782 2.6091 20 1 7.0029 -4.2186 1.2993 21 1 7.3296 -3.8900 3.6794 22 1 5.5249 -5.3028 2.8873 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.2126 2.3195 0.0004 27 1 1.3321 4.5115 0.0019 28 1 5.9305 2.5096 1.0217 29 1 5.9689 1.7851 -0.6036 30 1 5.8748 3.5529 -0.4192 31 1 4.3077 -1.7278 -1.0841 32 1 2.7720 -1.1400 -0.8343 33 1 4.4700 0.0725 2.1429 34 1 3.1445 -0.9642 1.5626 35 1 4.5327 -2.8163 4.4265 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260127234.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:01 Heat of formation + Delta-G solvation = -69.161866 kcal Electronic energy + Delta-G solvation = -19054.984243 eV Core-core repulsion = 15967.358793 eV Total energy + Delta-G solvation = -3087.625449 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.54973 -40.10062 -37.29087 -35.31987 -32.62603 -31.88971 -29.49477 -27.89747 -27.16553 -26.44514 -24.47616 -22.23570 -21.05621 -19.83039 -17.48391 -17.13496 -16.64633 -16.20264 -15.63963 -15.17739 -14.61346 -14.58364 -14.39882 -13.73841 -13.44763 -13.20051 -12.79244 -12.62698 -12.26961 -12.17082 -11.92595 -11.80256 -11.55899 -11.50178 -11.04067 -10.79675 -10.54784 -10.45077 -9.94131 -9.87226 -9.08259 -8.51113 -8.39820 -7.76242 -7.50561 -6.04075 -4.07703 1.45703 1.55753 3.27839 3.35929 3.39379 3.52011 3.85214 4.41406 4.56602 4.88084 4.96131 5.18783 5.28598 5.31214 5.32450 5.54781 5.58737 5.64572 5.85301 5.89662 5.97585 6.16084 6.23586 6.34111 6.42729 6.50056 6.78911 6.89334 7.05548 7.53694 7.66691 7.71856 7.93084 8.20016 8.31851 8.52216 8.99350 9.56625 11.06679 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023002 B = 0.006784 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.978653 B = 4126.427122 C = 4804.807135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.298 6.298 3 C 0.135 3.865 4 C -0.192 4.192 5 C -0.126 4.126 6 C 0.053 3.947 7 F -0.146 7.146 8 C -0.079 4.079 9 C -0.116 4.116 10 C -0.055 4.055 11 C 0.129 3.871 12 H 0.081 0.919 13 N -0.841 5.841 14 C 0.002 3.998 15 C -0.521 4.521 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.098 0.902 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.342 0.658 32 H 0.340 0.660 33 H 0.015 0.985 34 H 0.026 0.974 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 8.488 -7.304 12.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.210 6.210 3 C 0.090 3.910 4 C -0.211 4.211 5 C -0.145 4.145 6 C 0.034 3.966 7 F -0.125 7.125 8 C -0.080 4.080 9 C -0.172 4.172 10 C -0.057 4.057 11 C 0.018 3.982 12 H 0.099 0.901 13 N -0.374 5.374 14 C -0.036 4.036 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.117 0.883 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.311 8.863 -7.645 13.297 hybrid contribution 0.156 -1.070 1.136 1.568 sum -6.155 7.793 -6.509 11.873 Atomic orbital electron populations 1.23042 0.79226 1.03880 1.00755 1.86109 1.20525 1.26185 1.88190 1.18793 0.91650 0.84225 0.96381 1.20945 0.99912 0.91476 1.08779 1.20686 0.92438 0.98299 1.03036 1.17310 0.90569 0.80026 1.08710 1.91420 1.83450 1.43028 1.94563 1.19528 0.96928 0.90610 1.00981 1.20796 0.90080 1.02867 1.03468 1.19306 0.90762 0.95469 1.00132 1.20516 0.95843 0.87889 0.93933 0.90093 1.59340 1.08122 1.20503 1.49406 1.19774 0.97945 0.95230 0.90699 1.21196 1.24805 1.11348 0.98596 0.92503 1.25004 0.95809 0.97713 0.95710 1.69992 1.40586 1.39446 1.02975 0.86554 0.80726 0.82729 0.78091 1.19655 1.21060 1.21085 0.88318 0.92915 0.93027 0.85039 0.85186 0.90282 0.90020 0.91622 0.84490 0.84374 0.96653 0.95588 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.30 -5.10 6.59 -19.57 -0.13 -5.23 16 3 C 0.14 2.39 6.44 -39.23 -0.25 2.14 16 4 C -0.19 -2.84 9.04 -39.44 -0.36 -3.19 16 5 C -0.13 -1.83 10.02 -39.53 -0.40 -2.23 16 6 C 0.05 0.87 7.24 -39.42 -0.29 0.59 16 7 F -0.15 -2.32 16.38 2.25 0.04 -2.28 16 8 C -0.08 -1.40 5.88 -104.58 -0.62 -2.01 16 9 C -0.12 -1.83 9.23 36.00 0.33 -1.49 16 10 C -0.06 -1.07 4.96 -104.48 -0.52 -1.59 16 11 C 0.13 2.73 2.67 -68.87 -0.18 2.55 16 12 H 0.08 1.69 5.58 -51.93 -0.29 1.41 16 13 N -0.84 -16.71 9.10 -5.66 -0.05 -16.76 16 14 C 0.00 0.05 4.48 -27.88 -0.12 -0.08 16 15 C -0.52 -14.22 8.55 -34.44 -0.29 -14.51 16 16 H 0.06 1.50 7.15 -52.49 -0.38 1.12 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 19 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 25 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 26 H 0.13 1.53 6.30 -52.49 -0.33 1.19 16 27 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.08 1.27 6.24 -51.93 -0.32 0.95 16 30 H 0.06 0.91 7.47 -51.93 -0.39 0.52 16 31 H 0.34 6.84 7.90 -39.29 -0.31 6.53 16 32 H 0.34 6.71 6.07 -39.29 -0.24 6.47 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.03 0.72 7.33 -51.92 -0.38 0.34 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 290.13 15.07 4.37 4.37 Total: -1.00 -30.58 290.13 -6.11 -36.69 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.26 Total: 9.61 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -1.80 Total: -16.95 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.68 Total: -42.49 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.13 Total: -5.23 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.58 -6.11 -36.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260127234.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.469 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds