Wall clock time and date at job start Mon Mar 30 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35945 * 116.99604 * 2 1 4 4 C 1.38726 * 120.03512 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.97391 * 179.97438 * 4 3 2 6 6 C 1.38482 * 120.02804 * 0.03030 * 5 4 3 7 7 F 1.35100 * 119.96919 * 180.27306 * 6 5 4 8 8 C 1.38437 * 120.06124 * 359.97438 * 6 5 4 9 9 C 1.50692 * 119.98481 * 180.02562 * 8 6 5 10 10 C 1.38173 * 120.02639 * 359.97438 * 8 6 5 11 11 C 1.50699 * 120.01254 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.47204 * 347.44902 * 11 10 8 13 13 N 1.46901 * 109.47191 * 227.45196 * 11 10 8 14 14 C 1.52994 * 109.47421 * 107.44785 * 11 10 8 15 15 C 1.50706 * 109.47406 * 184.99765 * 14 11 10 16 16 H 1.08001 * 119.99784 * 0.02562 * 15 14 11 17 17 C 1.37872 * 119.99900 * 180.02562 * 15 14 11 18 18 N 1.31515 * 120.00158 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99726 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47496 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47097 * 120.00345 * 19 17 15 22 22 H 1.48496 * 109.47269 * 240.00049 * 19 17 15 23 23 H 1.09000 * 109.47146 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47483 * 300.00196 * 1 2 3 25 25 H 1.08998 * 109.47152 * 60.00028 * 1 2 3 26 26 H 1.07998 * 120.01037 * 359.96584 * 4 3 2 27 27 H 1.07998 * 119.99155 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.47597 * 95.91689 * 9 8 6 29 29 H 1.09001 * 109.47306 * 215.91823 * 9 8 6 30 30 H 1.08997 * 109.47247 * 335.91657 * 9 8 6 31 31 H 1.00904 * 111.00152 * 176.04198 * 13 11 10 32 32 H 1.00901 * 110.99861 * 299.99806 * 13 11 10 33 33 H 1.08995 * 109.47580 * 305.00291 * 14 11 10 34 34 H 1.09009 * 109.47100 * 65.00082 * 14 11 10 35 35 H 0.97005 * 119.99738 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2912 2.3752 0.0005 5 6 1.9195 3.6053 0.0011 6 6 3.3024 3.6770 0.0004 7 9 3.9158 4.8808 0.0065 8 6 4.0571 2.5164 -0.0002 9 6 5.5619 2.5965 -0.0003 10 6 3.4310 1.2847 0.0003 11 6 4.2528 0.0215 0.0002 12 1 5.2917 0.2638 -0.2236 13 7 3.7344 -0.8999 -1.0197 14 6 4.1690 -0.6416 1.3765 15 6 5.0866 -1.8365 1.4151 16 1 5.6714 -2.0967 0.5452 17 6 5.1795 -2.5976 2.5610 18 7 4.4670 -2.2811 3.6202 19 14 6.3174 -4.0782 2.6091 20 1 7.0029 -4.2186 1.2993 21 1 7.3296 -3.8900 3.6794 22 1 5.5249 -5.3028 2.8873 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.2126 2.3195 0.0004 27 1 1.3321 4.5115 0.0019 28 1 5.9305 2.5096 1.0217 29 1 5.9689 1.7851 -0.6036 30 1 5.8748 3.5529 -0.4192 31 1 4.3077 -1.7278 -1.0841 32 1 2.7720 -1.1400 -0.8343 33 1 4.4700 0.0725 2.1429 34 1 3.1445 -0.9642 1.5626 35 1 4.5327 -2.8163 4.4265 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260127234.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:00 Heat of formation + Delta-G solvation = -88.914651 kcal Electronic energy + Delta-G solvation = -19055.840788 eV Core-core repulsion = 15967.358793 eV Total energy + Delta-G solvation = -3088.481994 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.78694 -41.37232 -38.55031 -36.95943 -34.56346 -33.30319 -30.78362 -29.84716 -28.30168 -27.65695 -26.21926 -23.90205 -22.30838 -21.39195 -18.93564 -18.52529 -18.03222 -17.87886 -16.88023 -16.53716 -16.38600 -16.03655 -15.67582 -15.13040 -14.80467 -14.66301 -14.19366 -14.10713 -13.92462 -13.77641 -13.52135 -13.03176 -12.95381 -12.77975 -12.61796 -12.56559 -12.24666 -11.83150 -11.66543 -11.58050 -11.00031 -10.59266 -9.82413 -9.29173 -8.92674 -8.19529 -6.31138 0.19983 0.28471 1.39267 1.40390 1.53052 2.38657 2.40418 2.58125 3.13453 3.30751 3.67892 3.77240 4.02849 4.13291 4.31187 4.36495 4.44659 4.47184 4.55164 4.72776 4.75710 4.78108 4.83502 4.94584 5.13444 5.17691 5.24690 5.35321 5.42542 5.67632 5.78738 5.84756 6.19228 6.45966 6.52195 6.85128 6.89750 7.38081 8.91802 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023002 B = 0.006784 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.978653 B = 4126.427122 C = 4804.807135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.123 3.877 4 C -0.185 4.185 5 C -0.112 4.112 6 C 0.040 3.960 7 F -0.144 7.144 8 C -0.091 4.091 9 C -0.115 4.115 10 C -0.094 4.094 11 C 0.143 3.857 12 H 0.078 0.922 13 N -0.830 5.830 14 C 0.017 3.983 15 C -0.533 4.533 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.964 3.036 20 H -0.259 1.259 21 H -0.282 1.282 22 H -0.280 1.280 23 H 0.110 0.890 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.168 0.832 27 H 0.167 0.833 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.339 0.661 32 H 0.342 0.658 33 H -0.021 1.021 34 H -0.002 1.002 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 8.955 -8.291 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.077 3.923 4 C -0.204 4.204 5 C -0.130 4.130 6 C 0.021 3.979 7 F -0.123 7.123 8 C -0.093 4.093 9 C -0.171 4.171 10 C -0.095 4.095 11 C 0.031 3.969 12 H 0.096 0.904 13 N -0.363 5.363 14 C -0.022 4.022 15 C -0.571 4.571 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.789 3.211 20 H -0.183 1.183 21 H -0.208 1.208 22 H -0.206 1.206 23 H 0.129 0.871 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.186 0.814 27 H 0.184 0.816 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.152 0.848 32 H 0.159 0.841 33 H -0.003 1.003 34 H 0.017 0.983 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.119 9.336 -8.653 14.585 hybrid contribution 0.306 -1.164 1.442 1.878 sum -6.812 8.172 -7.211 12.853 Atomic orbital electron populations 1.23373 0.76690 1.05386 1.02403 1.86048 1.23264 1.26479 1.88172 1.19013 0.91470 0.85463 0.96321 1.21316 1.01562 0.90333 1.07148 1.21130 0.91844 0.99666 1.00391 1.17447 0.91434 0.79662 1.09370 1.91422 1.83585 1.42646 1.94611 1.19720 0.97767 0.90826 1.00974 1.20794 0.89498 1.03743 1.03043 1.19235 0.91797 0.94921 1.03537 1.20205 0.96471 0.88933 0.91241 0.90440 1.59342 1.08184 1.20194 1.48542 1.19579 0.95712 0.94298 0.92583 1.21586 1.24859 1.11801 0.98873 0.91735 1.25932 0.97416 1.00898 0.95312 1.70131 1.42362 1.40954 1.03696 0.85419 0.78496 0.78713 0.78517 1.18295 1.20824 1.20601 0.87135 0.91954 0.90487 0.81442 0.81567 0.91075 0.90350 0.89777 0.84818 0.84137 1.00289 0.98335 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -11.04 6.59 -92.93 -0.61 -11.65 16 3 C 0.12 4.27 6.44 22.49 0.14 4.41 16 4 C -0.19 -4.96 9.04 22.36 0.20 -4.75 16 5 C -0.11 -2.91 10.02 22.30 0.22 -2.69 16 6 C 0.04 1.25 7.24 22.38 0.16 1.42 16 7 F -0.14 -4.32 16.38 44.97 0.74 -3.58 16 8 C -0.09 -3.23 5.88 -19.84 -0.12 -3.34 16 9 C -0.11 -3.65 9.23 71.23 0.66 -2.99 16 10 C -0.09 -3.64 4.96 -19.77 -0.10 -3.74 16 11 C 0.14 6.20 2.67 44.17 0.12 6.32 16 12 H 0.08 3.35 5.58 -2.39 -0.01 3.33 16 13 N -0.83 -33.35 9.10 -171.81 -1.56 -34.91 16 14 C 0.02 0.90 4.48 29.85 0.13 1.03 16 15 C -0.53 -29.68 8.55 25.60 0.22 -29.46 16 16 H 0.06 3.41 7.15 -2.91 -0.02 3.39 16 17 C 0.00 0.13 5.46 84.65 0.46 0.59 16 18 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 19 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 20 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.06 1.23 7.66 -2.39 -0.02 1.21 16 25 H 0.08 1.28 7.66 -2.39 -0.02 1.26 16 26 H 0.17 3.17 6.30 -2.91 -0.02 3.16 16 27 H 0.17 3.10 8.06 -2.91 -0.02 3.07 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.08 2.50 6.24 -2.39 -0.01 2.48 16 30 H 0.08 2.29 7.47 -2.39 -0.02 2.27 16 31 H 0.34 13.68 7.90 -89.69 -0.71 12.97 16 32 H 0.34 13.65 6.07 -89.69 -0.54 13.10 16 33 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 34 H 0.00 -0.10 7.33 -2.38 -0.02 -0.12 16 35 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 Total: -1.00 -67.06 290.13 3.97 -63.10 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.12 Total: 29.16 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 3.22 Total: -31.75 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -1.28 Total: -91.28 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.61 Total: -11.65 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.74 Total: -3.58 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -67.06 3.97 -63.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260127234.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.819 kcal (2) G-P(sol) polarization free energy of solvation -67.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds