Wall clock time and date at job start Mon Mar 30 2020 06:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38709 * 120.04163 * 2 1 4 4 O 1.35898 * 120.04097 * 0.02562 * 3 2 1 5 5 C 1.38725 * 119.91884 * 180.02562 * 3 2 1 6 6 C 1.38183 * 119.98994 * 359.74489 * 5 3 2 7 7 C 1.50705 * 119.95674 * 180.27320 * 6 5 3 8 8 H 1.09001 * 109.47150 * 0.25945 * 7 6 5 9 9 C 1.53001 * 109.46658 * 120.25630 * 7 6 5 10 10 N 1.46903 * 109.46993 * 184.99703 * 9 7 6 11 11 C 1.52995 * 109.47075 * 240.25487 * 7 6 5 12 12 C 1.50699 * 109.47053 * 175.00329 * 11 7 6 13 13 H 1.07994 * 120.00054 * 0.02562 * 12 11 7 14 14 C 1.37875 * 120.00261 * 179.97438 * 12 11 7 15 15 N 1.31522 * 120.00019 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00487 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46916 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47286 * 119.99736 * 16 14 12 19 19 H 1.48502 * 109.47468 * 240.00564 * 16 14 12 20 20 C 1.38202 * 120.08209 * 0.53553 * 6 5 3 21 21 C 1.38343 * 120.04035 * 180.02562 * 2 1 3 22 22 F 1.35105 * 119.99941 * 359.97437 * 21 2 1 23 23 H 1.08996 * 109.47188 * 269.97320 * 1 2 3 24 24 H 1.08998 * 109.47110 * 29.97669 * 1 2 3 25 25 H 1.09001 * 109.47325 * 149.97798 * 1 2 3 26 26 H 0.96698 * 114.00011 * 89.99667 * 4 3 2 27 27 H 1.07998 * 120.00629 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.47394 * 304.99694 * 9 7 6 29 29 H 1.08998 * 109.47374 * 65.00190 * 9 7 6 30 30 H 1.00904 * 110.99669 * 56.04961 * 10 9 7 31 31 H 1.00906 * 111.00030 * 179.97438 * 10 9 7 32 32 H 1.08999 * 109.47292 * 294.99991 * 11 7 6 33 33 H 1.09001 * 109.47648 * 55.00529 * 11 7 6 34 34 H 0.96997 * 120.00229 * 179.97438 * 15 14 12 35 35 H 1.08002 * 119.96134 * 179.72638 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2008 0.0000 4 8 1.5236 2.3786 0.0005 5 6 3.5887 1.1978 -0.0005 6 6 4.2768 -0.0005 0.0043 7 6 5.7838 -0.0028 0.0099 8 1 6.1488 1.0243 0.0140 9 6 6.2879 -0.7282 1.2592 10 7 7.7519 -0.6271 1.3268 11 6 6.2974 -0.7216 -1.2393 12 6 7.7997 -0.6175 -1.2968 13 1 8.3346 -0.0917 -0.5199 14 6 8.4912 -1.1945 -2.3407 15 7 7.8399 -1.8362 -3.2861 16 14 10.3535 -1.0661 -2.4117 17 1 10.8419 -0.3005 -1.2368 18 1 10.9446 -2.4283 -2.3948 19 1 10.7544 -0.3678 -3.6595 20 6 3.5848 -1.1968 -0.0016 21 6 2.1995 -1.1976 -0.0005 22 9 1.5248 -2.3681 -0.0005 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5142 26 1 1.3277 2.7193 0.8841 27 1 4.1307 2.1318 -0.0001 28 1 5.8507 -0.2703 2.1465 29 1 5.9981 -1.7779 1.2117 30 1 8.0490 0.3370 1.3068 31 1 8.1095 -1.0984 2.1442 32 1 6.0072 -1.7715 -1.1994 33 1 5.8669 -0.2591 -2.1275 34 1 8.3264 -2.2418 -4.0207 35 1 4.1246 -2.1322 -0.0023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260129707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:21 Heat of formation + Delta-G solvation = -71.062139 kcal Electronic energy + Delta-G solvation = -18578.849706 eV Core-core repulsion = 15491.141855 eV Total energy + Delta-G solvation = -3087.707851 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.71981 -39.80903 -37.34281 -35.36896 -32.60834 -32.35377 -29.88480 -29.57279 -26.95911 -25.06681 -22.79288 -22.57916 -21.49510 -19.75577 -17.95569 -16.70592 -16.58613 -16.00429 -15.50559 -15.45449 -14.66239 -14.56902 -14.31166 -13.90538 -13.66238 -13.33182 -13.14727 -12.54313 -12.48484 -12.06300 -11.85207 -11.66782 -11.35471 -11.12714 -10.83925 -10.70459 -10.40701 -10.33101 -9.84192 -9.47990 -8.93957 -8.43669 -8.22773 -8.16776 -7.50552 -5.76898 -3.70904 1.28924 1.33622 3.44519 3.51724 3.55776 3.62197 4.04640 4.60341 4.65405 4.82328 4.95902 5.06529 5.40250 5.52909 5.54695 5.58124 5.65110 5.71853 5.82308 5.90547 6.02659 6.12667 6.25310 6.33991 6.43439 6.50326 6.83553 6.97711 7.02365 7.62483 7.78550 7.83397 7.86544 8.09604 8.29690 8.65128 9.36067 9.88294 11.36236 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.028655 B = 0.005379 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.916287 B = 5203.862171 C = 5359.883644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.165 4.165 3 C 0.127 3.873 4 O -0.493 6.493 5 C -0.152 4.152 6 C -0.015 4.015 7 C -0.052 4.052 8 H 0.070 0.930 9 C 0.090 3.910 10 N -0.813 5.813 11 C 0.038 3.962 12 C -0.478 4.478 13 H 0.084 0.916 14 C 0.044 3.956 15 N -0.911 5.911 16 Si 0.892 3.108 17 H -0.274 1.274 18 H -0.290 1.290 19 H -0.292 1.292 20 C -0.148 4.148 21 C 0.110 3.890 22 F -0.139 7.139 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.387 0.613 27 H 0.132 0.868 28 H 0.002 0.998 29 H 0.065 0.935 30 H 0.335 0.665 31 H 0.320 0.680 32 H 0.017 0.983 33 H 0.013 0.987 34 H 0.254 0.746 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.516 5.452 11.089 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.167 4.167 3 C 0.083 3.917 4 O -0.302 6.302 5 C -0.170 4.170 6 C -0.016 4.016 7 C -0.071 4.071 8 H 0.088 0.912 9 C -0.041 4.041 10 N -0.342 5.342 11 C 0.001 3.999 12 C -0.516 4.516 13 H 0.102 0.898 14 C -0.154 4.154 15 N -0.553 5.553 16 Si 0.721 3.279 17 H -0.199 1.199 18 H -0.217 1.217 19 H -0.219 1.219 20 C -0.166 4.166 21 C 0.091 3.909 22 F -0.118 7.118 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.242 0.758 27 H 0.150 0.850 28 H 0.020 0.980 29 H 0.084 0.916 30 H 0.148 0.852 31 H 0.132 0.868 32 H 0.035 0.965 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.486 4.856 9.646 15.765 hybrid contribution 0.689 0.262 1.109 1.332 sum -10.797 5.118 10.755 16.076 Atomic orbital electron populations 1.20539 0.90196 1.03352 1.02132 1.20015 0.97189 0.91664 1.07805 1.17890 0.89445 0.84143 1.00250 1.84801 1.76565 1.35665 1.33197 1.21399 0.92859 0.98926 1.03864 1.19961 0.97319 0.91121 0.93235 1.20521 0.86539 1.01003 0.99014 0.91173 1.21606 0.88345 0.99942 0.94243 1.58997 1.09552 1.19984 1.45668 1.19130 0.96774 0.94783 0.89164 1.21588 0.91149 1.32535 1.06360 0.89771 1.25013 0.97784 0.96427 0.96177 1.70002 1.34909 1.37869 1.12501 0.86545 0.86805 0.77284 0.77235 1.19862 1.21708 1.21921 1.21125 0.91518 1.00384 1.03609 1.17317 0.89858 0.80464 1.03246 1.91461 1.80419 1.45969 1.93946 0.91557 0.90698 0.91435 0.75752 0.84994 0.97975 0.91610 0.85209 0.86756 0.96484 0.96918 0.93677 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.61 36.00 0.35 -0.87 16 2 C -0.17 -2.38 5.90 -104.41 -0.62 -3.00 16 3 C 0.13 1.80 6.68 -39.23 -0.26 1.54 16 4 O -0.49 -5.78 12.55 -19.42 -0.24 -6.02 16 5 C -0.15 -2.33 9.61 -39.42 -0.38 -2.71 16 6 C -0.02 -0.27 4.78 -104.65 -0.50 -0.77 16 7 C -0.05 -0.99 2.29 -91.77 -0.21 -1.20 16 8 H 0.07 1.31 7.87 -51.93 -0.41 0.90 16 9 C 0.09 1.54 5.90 -3.82 -0.02 1.52 16 10 N -0.81 -14.16 6.70 -10.37 -0.07 -14.23 16 11 C 0.04 0.96 4.19 -27.89 -0.12 0.84 16 12 C -0.48 -12.87 7.94 -34.44 -0.27 -13.14 16 13 H 0.08 2.13 5.11 -52.49 -0.27 1.86 16 14 C 0.04 1.26 5.46 -17.82 -0.10 1.17 16 15 N -0.91 -27.92 13.29 55.43 0.74 -27.19 16 16 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 20 C -0.15 -2.54 8.79 -39.49 -0.35 -2.88 16 21 C 0.11 1.77 7.24 -39.44 -0.29 1.49 16 22 F -0.14 -2.22 16.48 2.25 0.04 -2.18 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 25 H 0.07 0.78 7.64 -51.93 -0.40 0.38 16 26 H 0.39 2.52 9.06 45.56 0.41 2.94 16 27 H 0.13 1.85 7.94 -52.49 -0.42 1.43 16 28 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 29 H 0.07 1.18 7.57 -51.93 -0.39 0.79 16 30 H 0.33 5.44 8.27 -39.29 -0.33 5.11 16 31 H 0.32 4.71 9.08 -39.29 -0.36 4.35 16 32 H 0.02 0.46 7.56 -51.93 -0.39 0.06 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.14 2.46 7.21 -52.49 -0.38 2.08 16 LS Contribution 295.85 15.07 4.46 4.46 Total: -1.00 -32.20 295.85 -6.58 -38.78 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -3.72 Total: 7.29 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.76 Total: -18.03 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.67 Total: -41.41 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.24 Total: -6.02 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.20 -6.58 -38.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260129707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.280 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds