Wall clock time and date at job start Mon Mar 30 2020 06:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38709 * 120.04163 * 2 1 4 4 O 1.35898 * 120.04097 * 0.02562 * 3 2 1 5 5 C 1.38725 * 119.91884 * 180.02562 * 3 2 1 6 6 C 1.38183 * 119.98994 * 359.74489 * 5 3 2 7 7 C 1.50705 * 119.95674 * 180.27320 * 6 5 3 8 8 H 1.09001 * 109.47150 * 0.25945 * 7 6 5 9 9 C 1.53001 * 109.46658 * 120.25630 * 7 6 5 10 10 N 1.46903 * 109.46993 * 184.99703 * 9 7 6 11 11 C 1.52995 * 109.47075 * 240.25487 * 7 6 5 12 12 C 1.50699 * 109.47053 * 175.00329 * 11 7 6 13 13 H 1.07994 * 120.00054 * 0.02562 * 12 11 7 14 14 C 1.37875 * 120.00261 * 179.97438 * 12 11 7 15 15 N 1.31522 * 120.00019 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00487 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46916 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47286 * 119.99736 * 16 14 12 19 19 H 1.48502 * 109.47468 * 240.00564 * 16 14 12 20 20 C 1.38202 * 120.08209 * 0.53553 * 6 5 3 21 21 C 1.38343 * 120.04035 * 180.02562 * 2 1 3 22 22 F 1.35105 * 119.99941 * 359.97437 * 21 2 1 23 23 H 1.08996 * 109.47188 * 269.97320 * 1 2 3 24 24 H 1.08998 * 109.47110 * 29.97669 * 1 2 3 25 25 H 1.09001 * 109.47325 * 149.97798 * 1 2 3 26 26 H 0.96698 * 114.00011 * 89.99667 * 4 3 2 27 27 H 1.07998 * 120.00629 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.47394 * 304.99694 * 9 7 6 29 29 H 1.08998 * 109.47374 * 65.00190 * 9 7 6 30 30 H 1.00904 * 110.99669 * 56.04961 * 10 9 7 31 31 H 1.00906 * 111.00030 * 179.97438 * 10 9 7 32 32 H 1.08999 * 109.47292 * 294.99991 * 11 7 6 33 33 H 1.09001 * 109.47648 * 55.00529 * 11 7 6 34 34 H 0.96997 * 120.00229 * 179.97438 * 15 14 12 35 35 H 1.08002 * 119.96134 * 179.72638 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2008 0.0000 4 8 1.5236 2.3786 0.0005 5 6 3.5887 1.1978 -0.0005 6 6 4.2768 -0.0005 0.0043 7 6 5.7838 -0.0028 0.0099 8 1 6.1488 1.0243 0.0140 9 6 6.2879 -0.7282 1.2592 10 7 7.7519 -0.6271 1.3268 11 6 6.2974 -0.7216 -1.2393 12 6 7.7997 -0.6175 -1.2968 13 1 8.3346 -0.0917 -0.5199 14 6 8.4912 -1.1945 -2.3407 15 7 7.8399 -1.8362 -3.2861 16 14 10.3535 -1.0661 -2.4117 17 1 10.8419 -0.3005 -1.2368 18 1 10.9446 -2.4283 -2.3948 19 1 10.7544 -0.3678 -3.6595 20 6 3.5848 -1.1968 -0.0016 21 6 2.1995 -1.1976 -0.0005 22 9 1.5248 -2.3681 -0.0005 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5142 26 1 1.3277 2.7193 0.8841 27 1 4.1307 2.1318 -0.0001 28 1 5.8507 -0.2703 2.1465 29 1 5.9981 -1.7779 1.2117 30 1 8.0490 0.3370 1.3068 31 1 8.1095 -1.0984 2.1442 32 1 6.0072 -1.7715 -1.1994 33 1 5.8669 -0.2591 -2.1275 34 1 8.3264 -2.2418 -4.0207 35 1 4.1246 -2.1322 -0.0023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260129707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:20 Heat of formation + Delta-G solvation = -93.893497 kcal Electronic energy + Delta-G solvation = -18579.839748 eV Core-core repulsion = 15491.141855 eV Total energy + Delta-G solvation = -3088.697893 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.97092 -40.99068 -38.60268 -36.67996 -34.41968 -33.78563 -31.43179 -30.77446 -28.64281 -26.42684 -24.48110 -23.96148 -22.80641 -21.16389 -19.21260 -18.31080 -17.88283 -17.43801 -16.73778 -16.72014 -16.38809 -16.07920 -15.63686 -15.36061 -15.06727 -14.60028 -14.33518 -14.04664 -13.65447 -13.53171 -13.39691 -12.97014 -12.90560 -12.67515 -12.52993 -12.26013 -12.08935 -11.72266 -11.53469 -11.28044 -10.90197 -10.37677 -9.64823 -9.48868 -8.94953 -7.96115 -5.95361 0.09081 0.11395 1.48029 1.49336 1.62079 2.42086 2.58769 2.93607 3.39192 3.43400 3.62843 3.80567 3.89290 4.17762 4.20012 4.32232 4.48725 4.59446 4.66453 4.73805 4.78993 4.88974 5.04884 5.14328 5.15988 5.24836 5.27083 5.49913 5.68238 5.80491 5.85841 6.06030 6.50019 6.59836 6.82193 6.91555 7.23451 7.68264 9.18191 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.028655 B = 0.005379 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.916287 B = 5203.862171 C = 5359.883644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.161 4.161 3 C 0.141 3.859 4 O -0.492 6.492 5 C -0.152 4.152 6 C -0.032 4.032 7 C -0.040 4.040 8 H 0.078 0.922 9 C 0.096 3.904 10 N -0.835 5.835 11 C 0.045 3.955 12 C -0.473 4.473 13 H 0.105 0.895 14 C -0.022 4.022 15 N -0.958 5.958 16 Si 0.959 3.041 17 H -0.252 1.252 18 H -0.295 1.295 19 H -0.294 1.294 20 C -0.164 4.164 21 C 0.098 3.902 22 F -0.142 7.142 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.414 0.586 27 H 0.148 0.852 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.343 0.657 31 H 0.338 0.662 32 H -0.016 1.016 33 H -0.025 1.025 34 H 0.250 0.750 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.002 7.379 12.859 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.163 4.163 3 C 0.096 3.904 4 O -0.306 6.306 5 C -0.171 4.171 6 C -0.033 4.033 7 C -0.059 4.059 8 H 0.096 0.904 9 C -0.035 4.035 10 N -0.367 5.367 11 C 0.008 3.992 12 C -0.512 4.512 13 H 0.122 0.878 14 C -0.216 4.216 15 N -0.603 5.603 16 Si 0.787 3.213 17 H -0.176 1.176 18 H -0.222 1.222 19 H -0.221 1.221 20 C -0.183 4.183 21 C 0.079 3.921 22 F -0.121 7.121 23 H 0.108 0.892 24 H 0.104 0.896 25 H 0.083 0.917 26 H 0.274 0.726 27 H 0.165 0.835 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.003 0.997 33 H -0.007 1.007 34 H 0.059 0.941 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.974 6.810 11.468 17.925 hybrid contribution 0.716 -0.288 0.587 0.970 sum -11.258 6.523 12.056 17.738 Atomic orbital electron populations 1.20623 0.87859 1.03737 1.03786 1.20357 0.98888 0.90953 1.06094 1.17815 0.89028 0.84915 0.98674 1.84747 1.75924 1.34333 1.35549 1.21551 0.93692 0.98603 1.03244 1.19766 0.96223 0.92001 0.95326 1.20256 0.88096 1.00563 0.96936 0.90359 1.21473 0.88538 0.99049 0.94408 1.58835 1.09776 1.20884 1.47188 1.18949 0.96168 0.93269 0.90784 1.22152 0.92245 1.30819 1.05982 0.87782 1.25942 1.02691 0.96709 0.96225 1.70178 1.36775 1.39822 1.13522 0.85466 0.81088 0.77029 0.77721 1.17564 1.22209 1.22120 1.21050 0.92352 0.99893 1.05039 1.17405 0.89499 0.81149 1.04041 1.91448 1.80301 1.46286 1.94054 0.89161 0.89622 0.91720 0.72607 0.83461 0.94769 0.93166 0.84344 0.84866 0.99726 1.00681 0.94109 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.08 9.61 71.24 0.68 -1.39 16 2 C -0.16 -4.34 5.90 -19.73 -0.12 -4.45 16 3 C 0.14 3.62 6.68 22.50 0.15 3.77 16 4 O -0.49 -9.65 12.55 -92.40 -1.16 -10.81 16 5 C -0.15 -4.41 9.61 22.37 0.21 -4.20 16 6 C -0.03 -1.11 4.78 -19.88 -0.10 -1.21 16 7 C -0.04 -1.52 2.29 -11.54 -0.03 -1.54 16 8 H 0.08 2.83 7.87 -2.39 -0.02 2.82 16 9 C 0.10 3.23 5.90 86.30 0.51 3.73 16 10 N -0.84 -27.78 6.70 -186.71 -1.25 -29.03 16 11 C 0.05 2.35 4.19 29.85 0.12 2.47 16 12 C -0.47 -25.72 7.94 25.60 0.20 -25.52 16 13 H 0.10 5.15 5.11 -2.91 -0.01 5.13 16 14 C -0.02 -1.31 5.46 84.65 0.46 -0.84 16 15 N -0.96 -60.87 13.29 21.45 0.28 -60.58 16 16 Si 0.96 45.78 29.54 68.60 2.03 47.80 16 17 H -0.25 -11.02 7.11 99.48 0.71 -10.32 16 18 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 19 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 20 C -0.16 -5.81 8.79 22.33 0.20 -5.61 16 21 C 0.10 3.13 7.24 22.36 0.16 3.29 16 22 F -0.14 -4.54 16.48 44.97 0.74 -3.80 16 23 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.08 1.56 7.53 -2.39 -0.02 1.54 16 25 H 0.06 1.35 7.64 -2.39 -0.02 1.33 16 26 H 0.41 3.53 9.06 -74.06 -0.67 2.85 16 27 H 0.15 3.75 7.94 -2.91 -0.02 3.73 16 28 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 1.83 7.57 -2.39 -0.02 1.81 16 30 H 0.34 10.35 8.27 -89.69 -0.74 9.61 16 31 H 0.34 9.28 9.08 -89.69 -0.81 8.46 16 32 H -0.02 -0.90 7.56 -2.39 -0.02 -0.92 16 33 H -0.03 -1.47 8.14 -2.39 -0.02 -1.49 16 34 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.12 4.62 7.21 -2.91 -0.02 4.60 16 Total: -1.00 -70.84 295.85 2.03 -68.81 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -1.09 Total: 19.12 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 2.47 Total: -31.51 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -0.97 Total: -89.62 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -1.16 Total: -10.81 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.74 Total: -3.80 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -70.84 2.03 -68.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260129707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.080 kcal (2) G-P(sol) polarization free energy of solvation -70.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds