Wall clock time and date at job start Mon Mar 30 2020 06:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38292 * 119.93984 * 2 1 4 4 C 1.38294 * 120.03270 * 179.97438 * 3 2 1 5 5 F 1.35096 * 120.04670 * 180.02562 * 4 3 2 6 6 C 1.38944 * 119.90086 * 0.02562 * 4 3 2 7 7 O 1.35953 * 120.06253 * 179.97438 * 6 4 3 8 8 C 1.38620 * 119.87897 * 359.72680 * 6 4 3 9 9 C 1.38215 * 119.93411 * 179.97438 * 2 1 3 10 10 C 1.50704 * 119.95420 * 0.02562 * 9 2 1 11 11 H 1.08996 * 109.47017 * 355.49317 * 10 9 2 12 12 C 1.53006 * 109.46931 * 115.49279 * 10 9 2 13 13 N 1.46897 * 109.46902 * 293.72445 * 12 10 9 14 14 C 1.52994 * 109.47443 * 235.49184 * 10 9 2 15 15 C 1.50693 * 109.47421 * 174.85247 * 14 10 9 16 16 H 1.08009 * 120.00107 * 4.15866 * 15 14 10 17 17 C 1.37882 * 120.00559 * 184.15982 * 15 14 10 18 18 N 1.31516 * 119.99396 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00389 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47099 * 90.00279 * 19 17 15 21 21 H 1.48504 * 109.47091 * 209.99956 * 19 17 15 22 22 H 1.48492 * 109.47114 * 330.00206 * 19 17 15 23 23 H 1.08996 * 109.47351 * 263.97048 * 1 2 3 24 24 H 1.09004 * 109.47196 * 23.96816 * 1 2 3 25 25 H 1.09003 * 109.47307 * 143.96765 * 1 2 3 26 26 H 1.07998 * 119.98346 * 359.95806 * 3 2 1 27 27 H 0.96701 * 114.00503 * 89.99403 * 7 6 4 28 28 H 1.07995 * 120.02056 * 180.29331 * 8 6 4 29 29 H 1.09000 * 109.47047 * 173.72660 * 12 10 9 30 30 H 1.08996 * 109.47452 * 53.72596 * 12 10 9 31 31 H 1.00900 * 111.00331 * 174.41066 * 13 12 10 32 32 H 1.00902 * 111.00460 * 298.36545 * 13 12 10 33 33 H 1.09001 * 109.47037 * 294.85300 * 14 10 9 34 34 H 1.09001 * 109.47173 * 54.84883 * 14 10 9 35 35 H 0.97000 * 119.99860 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5801 1.2006 0.0005 5 9 4.2547 2.3711 0.0011 6 6 4.2747 -0.0028 0.0005 7 8 5.6342 -0.0044 0.0005 8 6 3.5790 -1.2017 0.0057 9 6 2.1967 -1.1978 0.0005 10 6 1.4406 -2.5014 0.0005 11 1 0.3721 -2.3017 0.0808 12 6 1.7224 -3.2544 -1.3013 13 7 1.1555 -2.5069 -2.4317 14 6 1.8912 -3.3524 1.1895 15 6 1.0479 -4.5991 1.2633 16 1 0.3140 -4.8008 0.4969 17 6 1.2131 -5.4824 2.3090 18 7 2.1064 -5.2365 3.2424 19 14 0.1673 -7.0275 2.4007 20 1 0.8535 -8.1329 1.6850 21 1 -0.0318 -7.4067 3.8227 22 1 -1.1512 -6.7710 1.7676 23 1 -0.3634 -0.1079 1.0219 24 1 -0.3634 0.9391 -0.4175 25 1 -0.3634 -0.8311 -0.6045 26 1 1.6559 2.1329 -0.0007 27 1 6.0276 -0.0048 0.8839 28 1 4.1165 -2.1383 0.0105 29 1 1.2669 -4.2435 -1.2548 30 1 2.7991 -3.3562 -1.4365 31 1 1.4059 -2.9351 -3.3104 32 1 0.1539 -2.4220 -2.3433 33 1 2.9379 -3.6287 1.0626 34 1 1.7755 -2.7804 2.1102 35 1 2.2229 -5.8581 3.9779 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260147579.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:35 Heat of formation + Delta-G solvation = -105.906560 kcal Electronic energy + Delta-G solvation = -18747.541335 eV Core-core repulsion = 15658.322517 eV Total energy + Delta-G solvation = -3089.218819 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.85687 -40.93865 -38.57634 -36.78144 -34.78055 -32.86278 -32.75592 -30.56113 -27.71037 -26.83997 -24.63299 -24.21839 -22.53788 -20.99081 -19.34472 -18.55500 -17.77290 -17.66811 -16.89658 -16.64154 -16.35845 -15.81409 -15.44368 -15.29162 -14.81149 -14.60233 -14.47422 -14.33929 -14.12196 -13.48945 -13.21612 -13.14812 -12.73587 -12.56622 -12.46410 -12.33244 -12.26188 -11.62407 -11.45357 -11.27591 -11.06584 -10.52516 -9.74740 -9.44837 -9.19573 -8.16616 -6.26164 0.15324 0.25548 1.41918 1.42461 1.52656 2.41898 2.53916 3.05199 3.17318 3.36599 3.74518 3.80007 3.93102 4.14956 4.28807 4.41619 4.57351 4.71841 4.76224 4.88998 4.94909 5.04405 5.06625 5.15651 5.19602 5.30018 5.33606 5.52233 5.59848 5.83826 5.87976 5.90624 6.25044 6.34279 6.70617 6.75600 6.89356 7.42452 8.94846 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025203 B = 0.005915 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.717652 B = 4732.729331 C = 5097.376557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.063 4.063 3 C -0.134 4.134 4 C 0.046 3.954 5 F -0.143 7.143 6 C 0.061 3.939 7 O -0.501 6.501 8 C -0.123 4.123 9 C -0.041 4.041 10 C -0.036 4.036 11 H 0.082 0.918 12 C 0.084 3.916 13 N -0.845 5.845 14 C 0.042 3.958 15 C -0.528 4.528 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.933 5.933 19 Si 0.957 3.043 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.261 1.261 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.162 0.838 27 H 0.406 0.594 28 H 0.122 0.878 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.346 0.654 32 H 0.344 0.656 33 H -0.008 1.008 34 H -0.009 1.009 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.092 9.960 -7.584 12.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.064 4.064 3 C -0.153 4.153 4 C 0.026 3.974 5 F -0.122 7.122 6 C 0.015 3.985 7 O -0.314 6.314 8 C -0.141 4.141 9 C -0.041 4.041 10 C -0.055 4.055 11 H 0.101 0.899 12 C -0.047 4.047 13 N -0.375 5.375 14 C 0.004 3.996 15 C -0.566 4.566 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.573 5.573 19 Si 0.783 3.217 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.185 1.185 23 H 0.091 0.909 24 H 0.108 0.892 25 H 0.095 0.905 26 H 0.180 0.820 27 H 0.264 0.736 28 H 0.140 0.860 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.010 0.990 34 H 0.009 0.991 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.604 10.544 -7.778 13.200 hybrid contribution -0.128 -1.739 0.843 1.937 sum -1.732 8.805 -6.935 11.341 Atomic orbital electron populations 1.20868 0.88772 1.04176 1.02917 1.19847 0.97832 0.90833 0.97844 1.21113 0.90984 1.00104 1.03075 1.18100 0.90974 0.80350 1.07965 1.91432 1.80635 1.45739 1.94411 1.18394 0.83683 0.91143 1.05235 1.84779 1.15032 1.96308 1.35249 1.21155 0.94645 0.97000 1.01320 1.19819 0.92628 0.95639 0.96035 1.20234 0.99267 0.90738 0.95266 0.89944 1.21589 0.98862 0.94342 0.89872 1.58698 1.17142 1.57282 1.04421 1.18946 0.95036 0.93494 0.92119 1.21605 1.20371 1.06290 1.08376 0.91676 1.25893 0.96672 1.01574 0.95458 1.70099 1.35942 1.38148 1.13125 0.85560 0.79492 0.79524 0.77156 1.20196 1.21285 1.18502 0.90933 0.89174 0.90464 0.82034 0.73603 0.86027 0.95159 0.92914 0.84108 0.84313 0.98980 0.99064 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.63 9.14 71.24 0.65 -1.98 16 2 C -0.06 -1.89 5.88 -19.86 -0.12 -2.01 16 3 C -0.13 -3.74 9.65 22.30 0.22 -3.52 16 4 C 0.05 1.44 7.31 22.45 0.16 1.60 16 5 F -0.14 -4.44 17.11 44.97 0.77 -3.67 16 6 C 0.06 2.04 6.71 22.53 0.15 2.19 16 7 O -0.50 -15.30 13.37 -93.02 -1.24 -16.54 16 8 C -0.12 -4.44 8.63 22.36 0.19 -4.25 16 9 C -0.04 -1.44 4.54 -19.87 -0.09 -1.53 16 10 C -0.04 -1.38 1.91 -11.54 -0.02 -1.40 16 11 H 0.08 2.99 5.68 -2.39 -0.01 2.98 16 12 C 0.08 2.90 5.99 86.31 0.52 3.42 16 13 N -0.85 -22.63 9.34 -186.72 -1.74 -24.37 16 14 C 0.04 2.05 4.12 29.84 0.12 2.18 16 15 C -0.53 -27.91 8.40 25.60 0.21 -27.69 16 16 H 0.07 3.25 6.95 -2.91 -0.02 3.23 16 17 C 0.00 0.10 5.46 84.66 0.46 0.56 16 18 N -0.93 -55.07 13.29 21.45 0.28 -54.78 16 19 Si 0.96 42.53 29.54 68.60 2.03 44.55 16 20 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.09 1.61 8.04 -2.38 -0.02 1.59 16 25 H 0.08 1.83 6.53 -2.39 -0.02 1.82 16 26 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 27 H 0.41 8.61 9.06 -74.06 -0.67 7.94 16 28 H 0.12 4.65 7.14 -2.91 -0.02 4.63 16 29 H 0.03 1.13 6.72 -2.39 -0.02 1.11 16 30 H 0.05 1.92 7.49 -2.39 -0.02 1.90 16 31 H 0.35 7.86 9.08 -89.69 -0.81 7.04 16 32 H 0.34 8.08 9.05 -89.69 -0.81 7.27 16 33 H -0.01 -0.44 7.33 -2.39 -0.02 -0.45 16 34 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -64.62 297.43 1.41 -63.22 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -1.15 Total: 24.03 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 2.46 Total: -32.43 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -1.46 Total: -79.16 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -1.24 Total: -16.54 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.77 Total: -3.67 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -64.62 1.41 -63.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147579.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.689 kcal (2) G-P(sol) polarization free energy of solvation -64.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds