Wall clock time and date at job start Mon Mar 30 2020 06:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38301 * 119.93704 * 2 1 4 4 C 1.38293 * 120.03294 * 179.77222 * 3 2 1 5 5 F 1.35093 * 120.05184 * 180.25604 * 4 3 2 6 6 C 1.38952 * 119.90187 * 0.47804 * 4 3 2 7 7 O 1.35951 * 120.06357 * 179.75008 * 6 4 3 8 8 C 1.38620 * 119.87397 * 359.77498 * 6 4 3 9 9 C 1.38216 * 119.93906 * 180.27778 * 2 1 3 10 10 C 1.50698 * 119.95291 * 359.97438 * 9 2 1 11 11 H 1.09000 * 109.47150 * 354.69870 * 10 9 2 12 12 C 1.52993 * 109.47355 * 234.69684 * 10 9 2 13 13 N 1.46903 * 109.47283 * 64.99676 * 12 10 9 14 14 C 1.53001 * 109.47338 * 114.69475 * 10 9 2 15 15 C 1.50699 * 109.47146 * 185.00176 * 14 10 9 16 16 H 1.07994 * 120.00042 * 0.02562 * 15 14 10 17 17 C 1.37875 * 119.99828 * 179.97438 * 15 14 10 18 18 N 1.31513 * 120.00346 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99882 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47176 * 90.00567 * 19 17 15 21 21 H 1.48506 * 109.46960 * 210.00434 * 19 17 15 22 22 H 1.48499 * 109.47263 * 330.00199 * 19 17 15 23 23 H 1.09003 * 109.47091 * 263.93987 * 1 2 3 24 24 H 1.08997 * 109.47272 * 143.94133 * 1 2 3 25 25 H 1.08999 * 109.47193 * 23.94151 * 1 2 3 26 26 H 1.08000 * 119.98876 * 0.02562 * 3 2 1 27 27 H 0.96707 * 114.00191 * 270.02287 * 7 6 4 28 28 H 1.08004 * 120.01484 * 180.02562 * 8 6 4 29 29 H 1.09005 * 109.47419 * 185.00026 * 12 10 9 30 30 H 1.08998 * 109.47387 * 304.99793 * 12 10 9 31 31 H 1.00897 * 111.00063 * 180.02562 * 13 12 10 32 32 H 1.00896 * 110.99913 * 303.95677 * 13 12 10 33 33 H 1.09007 * 109.47114 * 305.00255 * 14 10 9 34 34 H 1.08994 * 109.47202 * 64.99989 * 14 10 9 35 35 H 0.96996 * 120.00764 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1985 0.0000 4 6 3.5800 1.2008 0.0048 5 9 4.2546 2.3713 0.0100 6 6 4.2748 -0.0026 -0.0005 7 8 5.6343 -0.0041 -0.0010 8 6 3.5790 -1.2015 -0.0058 9 6 2.1967 -1.1977 -0.0058 10 6 1.4408 -2.5014 -0.0115 11 1 0.3733 -2.3028 0.0847 12 6 1.9065 -3.3662 1.1615 13 7 1.5442 -2.7123 2.4261 14 6 1.7057 -3.2388 -1.3256 15 6 0.8556 -4.4817 -1.3844 16 1 0.1923 -4.7214 -0.5665 17 6 0.9238 -5.3123 -2.4828 18 7 1.7311 -5.0201 -3.4790 19 14 -0.1305 -6.8526 -2.5560 20 1 -1.4336 -6.5307 -3.1911 21 1 0.5665 -7.8920 -3.3555 22 1 -0.3624 -7.3596 -1.1796 23 1 -0.3633 -0.1085 1.0219 24 1 -0.3633 -0.8307 -0.6049 25 1 -0.3633 0.9392 -0.4170 26 1 1.6559 2.1331 0.0004 27 1 6.0273 -0.0005 -0.8846 28 1 4.1167 -2.1382 -0.0095 29 1 1.4254 -4.3428 1.1064 30 1 2.9883 -3.4909 1.1139 31 1 1.8416 -3.2642 3.2167 32 1 1.9252 -1.7793 2.4729 33 1 1.4566 -2.5882 -2.1640 34 1 2.7585 -3.5157 -1.3810 35 1 1.7795 -5.6046 -4.2516 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260147585.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:38 Heat of formation + Delta-G solvation = -85.086081 kcal Electronic energy + Delta-G solvation = -18768.982103 eV Core-core repulsion = 15680.666128 eV Total energy + Delta-G solvation = -3088.315975 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.69999 -39.79297 -37.38819 -35.38684 -32.89380 -31.68966 -31.31222 -29.09006 -26.35159 -25.35117 -23.28964 -22.54392 -21.34935 -19.55562 -18.02664 -16.91345 -16.58719 -16.22439 -15.63314 -15.35016 -14.74124 -14.55063 -14.20314 -13.85695 -13.57865 -13.36428 -13.29003 -12.90365 -12.32163 -12.23412 -11.73688 -11.49818 -11.26536 -11.18344 -10.94295 -10.75599 -10.59338 -10.29232 -9.90643 -9.59130 -9.10872 -8.59819 -8.40970 -8.25433 -8.01010 -6.05863 -4.08577 1.26951 1.37967 3.28849 3.35827 3.38608 3.63223 4.16614 4.41370 4.47686 4.86717 5.07150 5.11808 5.31219 5.33063 5.41881 5.72989 5.77119 5.87847 5.93846 6.00828 6.19775 6.27783 6.34016 6.38412 6.56471 6.63840 6.90382 6.97722 7.01483 7.49806 7.64021 7.66308 7.69475 7.83331 7.92885 8.32688 8.97597 9.55977 11.05075 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025724 B = 0.005814 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.221634 B = 4815.023933 C = 5028.392112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.062 4.062 3 C -0.143 4.143 4 C 0.057 3.943 5 F -0.142 7.142 6 C 0.065 3.935 7 O -0.493 6.493 8 C -0.111 4.111 9 C -0.048 4.048 10 C -0.051 4.051 11 H 0.086 0.914 12 C 0.075 3.925 13 N -0.852 5.852 14 C 0.035 3.965 15 C -0.519 4.519 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.133 0.867 27 H 0.389 0.611 28 H 0.137 0.863 29 H 0.088 0.912 30 H 0.019 0.981 31 H 0.332 0.668 32 H 0.331 0.669 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.088 9.708 6.994 12.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.062 4.062 3 C -0.161 4.161 4 C 0.037 3.963 5 F -0.121 7.121 6 C 0.019 3.981 7 O -0.302 6.302 8 C -0.130 4.130 9 C -0.049 4.049 10 C -0.070 4.070 11 H 0.104 0.896 12 C -0.055 4.055 13 N -0.380 5.380 14 C -0.003 4.003 15 C -0.557 4.557 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.151 0.849 27 H 0.244 0.756 28 H 0.155 0.845 29 H 0.107 0.893 30 H 0.037 0.963 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.359 9.592 7.175 12.055 hybrid contribution 0.907 -0.570 -0.609 1.232 sum 2.265 9.022 6.565 11.385 Atomic orbital electron populations 1.20862 0.90346 1.03027 1.03033 1.19692 0.96712 0.91341 0.98452 1.20885 0.91461 0.99276 1.04521 1.17987 0.90328 0.80652 1.07310 1.91444 1.80475 1.45853 1.94294 1.18385 0.83280 0.91136 1.05277 1.84833 1.15469 1.96331 1.33583 1.21253 0.94275 0.97143 1.00292 1.20155 0.92779 0.96133 0.95808 1.20567 0.99175 0.89508 0.97709 0.89568 1.21882 0.97241 0.98629 0.87737 1.58876 1.68093 1.06555 1.04525 1.19122 0.97269 0.94426 0.89459 1.21214 1.23792 1.07135 1.03602 0.92239 1.25006 0.95514 0.98064 0.95706 1.69958 1.37545 1.38100 1.07717 0.86615 0.80463 0.82966 0.78108 1.20652 1.21322 1.19808 0.90592 0.89838 0.92001 0.84876 0.75587 0.84511 0.89331 0.96257 0.85707 0.85750 0.96214 0.96420 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.14 36.00 0.33 -1.22 16 2 C -0.06 -0.94 5.88 -104.61 -0.62 -1.55 16 3 C -0.14 -2.03 9.65 -39.54 -0.38 -2.42 16 4 C 0.06 0.88 7.31 -39.30 -0.29 0.59 16 5 F -0.14 -2.20 17.11 2.25 0.04 -2.16 16 6 C 0.06 1.02 6.71 -39.18 -0.26 0.75 16 7 O -0.49 -7.06 13.37 -19.59 -0.26 -7.33 16 8 C -0.11 -1.84 8.71 -39.44 -0.34 -2.19 16 9 C -0.05 -0.82 3.82 -104.63 -0.40 -1.22 16 10 C -0.05 -0.97 1.92 -91.78 -0.18 -1.14 16 11 H 0.09 1.66 5.70 -51.93 -0.30 1.37 16 12 C 0.08 1.33 5.98 -3.83 -0.02 1.31 16 13 N -0.85 -12.73 9.62 -10.37 -0.10 -12.83 16 14 C 0.03 0.83 4.25 -27.88 -0.12 0.71 16 15 C -0.52 -13.69 8.34 -34.44 -0.29 -13.98 16 16 H 0.06 1.53 7.08 -52.49 -0.37 1.16 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 19 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.08 1.25 6.53 -51.93 -0.34 0.91 16 25 H 0.06 0.69 8.04 -51.93 -0.42 0.28 16 26 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.39 3.85 9.06 45.56 0.41 4.26 16 28 H 0.14 2.30 7.12 -52.48 -0.37 1.93 16 29 H 0.09 1.74 6.82 -51.93 -0.35 1.38 16 30 H 0.02 0.34 6.93 -51.93 -0.36 -0.02 16 31 H 0.33 4.27 9.08 -39.29 -0.36 3.92 16 32 H 0.33 4.76 8.07 -39.29 -0.32 4.44 16 33 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.02 0.45 7.90 -51.93 -0.41 0.04 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 296.40 15.07 4.47 4.47 Total: -1.00 -29.63 296.40 -6.39 -36.02 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -3.59 Total: 9.88 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -2.66 Total: -18.85 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.64 Total: -37.94 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.26 Total: -7.33 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.63 -6.39 -36.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147585.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.068 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds