Wall clock time and date at job start Mon Mar 30 2020 06:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38301 * 119.93704 * 2 1 4 4 C 1.38293 * 120.03294 * 179.77222 * 3 2 1 5 5 F 1.35093 * 120.05184 * 180.25604 * 4 3 2 6 6 C 1.38952 * 119.90187 * 0.47804 * 4 3 2 7 7 O 1.35951 * 120.06357 * 179.75008 * 6 4 3 8 8 C 1.38620 * 119.87397 * 359.77498 * 6 4 3 9 9 C 1.38216 * 119.93906 * 180.27778 * 2 1 3 10 10 C 1.50698 * 119.95291 * 359.97438 * 9 2 1 11 11 H 1.09000 * 109.47150 * 354.69870 * 10 9 2 12 12 C 1.52993 * 109.47355 * 234.69684 * 10 9 2 13 13 N 1.46903 * 109.47283 * 64.99676 * 12 10 9 14 14 C 1.53001 * 109.47338 * 114.69475 * 10 9 2 15 15 C 1.50699 * 109.47146 * 185.00176 * 14 10 9 16 16 H 1.07994 * 120.00042 * 0.02562 * 15 14 10 17 17 C 1.37875 * 119.99828 * 179.97438 * 15 14 10 18 18 N 1.31513 * 120.00346 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99882 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47176 * 90.00567 * 19 17 15 21 21 H 1.48506 * 109.46960 * 210.00434 * 19 17 15 22 22 H 1.48499 * 109.47263 * 330.00199 * 19 17 15 23 23 H 1.09003 * 109.47091 * 263.93987 * 1 2 3 24 24 H 1.08997 * 109.47272 * 143.94133 * 1 2 3 25 25 H 1.08999 * 109.47193 * 23.94151 * 1 2 3 26 26 H 1.08000 * 119.98876 * 0.02562 * 3 2 1 27 27 H 0.96707 * 114.00191 * 270.02287 * 7 6 4 28 28 H 1.08004 * 120.01484 * 180.02562 * 8 6 4 29 29 H 1.09005 * 109.47419 * 185.00026 * 12 10 9 30 30 H 1.08998 * 109.47387 * 304.99793 * 12 10 9 31 31 H 1.00897 * 111.00063 * 180.02562 * 13 12 10 32 32 H 1.00896 * 110.99913 * 303.95677 * 13 12 10 33 33 H 1.09007 * 109.47114 * 305.00255 * 14 10 9 34 34 H 1.08994 * 109.47202 * 64.99989 * 14 10 9 35 35 H 0.96996 * 120.00764 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1985 0.0000 4 6 3.5800 1.2008 0.0048 5 9 4.2546 2.3713 0.0100 6 6 4.2748 -0.0026 -0.0005 7 8 5.6343 -0.0041 -0.0010 8 6 3.5790 -1.2015 -0.0058 9 6 2.1967 -1.1977 -0.0058 10 6 1.4408 -2.5014 -0.0115 11 1 0.3733 -2.3028 0.0847 12 6 1.9065 -3.3662 1.1615 13 7 1.5442 -2.7123 2.4261 14 6 1.7057 -3.2388 -1.3256 15 6 0.8556 -4.4817 -1.3844 16 1 0.1923 -4.7214 -0.5665 17 6 0.9238 -5.3123 -2.4828 18 7 1.7311 -5.0201 -3.4790 19 14 -0.1305 -6.8526 -2.5560 20 1 -1.4336 -6.5307 -3.1911 21 1 0.5665 -7.8920 -3.3555 22 1 -0.3624 -7.3596 -1.1796 23 1 -0.3633 -0.1085 1.0219 24 1 -0.3633 -0.8307 -0.6049 25 1 -0.3633 0.9392 -0.4170 26 1 1.6559 2.1331 0.0004 27 1 6.0273 -0.0005 -0.8846 28 1 4.1167 -2.1382 -0.0095 29 1 1.4254 -4.3428 1.1064 30 1 2.9883 -3.4909 1.1139 31 1 1.8416 -3.2642 3.2167 32 1 1.9252 -1.7793 2.4729 33 1 1.4566 -2.5882 -2.1640 34 1 2.7585 -3.5157 -1.3810 35 1 1.7795 -5.6046 -4.2516 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260147585.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:38 Heat of formation + Delta-G solvation = -105.874006 kcal Electronic energy + Delta-G solvation = -18769.883535 eV Core-core repulsion = 15680.666128 eV Total energy + Delta-G solvation = -3089.217407 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.90796 -41.05377 -38.62854 -36.80354 -34.80391 -32.90245 -32.72838 -30.65491 -27.71609 -26.90546 -24.72426 -24.19629 -22.61203 -20.98049 -19.30078 -18.55422 -17.85762 -17.75840 -16.91515 -16.77220 -16.32235 -15.95326 -15.62803 -15.22580 -14.78095 -14.59756 -14.50146 -14.26510 -13.96055 -13.89943 -13.21958 -12.98001 -12.77565 -12.66572 -12.53027 -12.29909 -12.17227 -11.66660 -11.56839 -11.34870 -11.01094 -10.51624 -9.82260 -9.54721 -9.27982 -8.16032 -6.25322 0.05333 0.15349 1.43093 1.43563 1.54176 2.39839 2.45985 2.99381 3.17842 3.30581 3.67835 3.80793 3.81151 4.10094 4.23038 4.39550 4.48271 4.65815 4.72835 4.89068 4.89885 4.94743 5.01694 5.13390 5.23513 5.26300 5.33563 5.53256 5.55549 5.80446 5.81889 5.88087 6.27276 6.28421 6.65616 6.67990 6.90217 7.43459 8.95311 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025724 B = 0.005814 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.221634 B = 4815.023933 C = 5028.392112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.063 4.063 3 C -0.131 4.131 4 C 0.052 3.948 5 F -0.141 7.141 6 C 0.064 3.936 7 O -0.500 6.500 8 C -0.122 4.122 9 C -0.063 4.063 10 C -0.037 4.037 11 H 0.085 0.915 12 C 0.084 3.916 13 N -0.844 5.844 14 C 0.045 3.955 15 C -0.528 4.528 16 H 0.064 0.936 17 C 0.003 3.997 18 N -0.933 5.933 19 Si 0.957 3.043 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.263 1.263 23 H 0.089 0.911 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.164 0.836 27 H 0.407 0.593 28 H 0.125 0.875 29 H 0.068 0.932 30 H 0.016 0.984 31 H 0.346 0.654 32 H 0.338 0.662 33 H -0.010 1.010 34 H -0.007 1.007 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.206 10.629 8.092 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.063 4.063 3 C -0.150 4.150 4 C 0.033 3.967 5 F -0.120 7.120 6 C 0.019 3.981 7 O -0.313 6.313 8 C -0.140 4.140 9 C -0.063 4.063 10 C -0.056 4.056 11 H 0.103 0.897 12 C -0.047 4.047 13 N -0.374 5.374 14 C 0.007 3.993 15 C -0.566 4.566 16 H 0.082 0.918 17 C -0.195 4.195 18 N -0.574 5.574 19 Si 0.782 3.218 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.187 1.187 23 H 0.107 0.893 24 H 0.081 0.919 25 H 0.106 0.894 26 H 0.182 0.818 27 H 0.266 0.734 28 H 0.143 0.857 29 H 0.086 0.914 30 H 0.034 0.966 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.008 0.992 34 H 0.011 0.989 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.480 10.519 8.289 13.401 hybrid contribution 1.245 -0.791 -0.946 1.752 sum 1.725 9.728 7.343 12.309 Atomic orbital electron populations 1.20883 0.88932 1.03581 1.03641 1.19883 0.97746 0.90908 0.97762 1.21141 0.91019 1.00064 1.02735 1.18114 0.90880 0.80444 1.07304 1.91448 1.80566 1.45682 1.94292 1.18375 0.83803 0.91002 1.04948 1.84776 1.14864 1.96263 1.35372 1.21179 0.94308 0.97225 1.01307 1.19980 0.92850 0.95817 0.97674 1.20244 0.99471 0.90391 0.95483 0.89703 1.21623 0.96710 0.97573 0.88777 1.58754 1.67995 1.06943 1.03723 1.18917 0.95258 0.93796 0.91321 1.21608 1.23663 1.07820 1.03508 0.91774 1.25871 0.96801 1.01356 0.95455 1.70090 1.39347 1.39480 1.08435 0.85566 0.78716 0.79027 0.78476 1.20002 1.21264 1.18698 0.89283 0.91927 0.89384 0.81811 0.73406 0.85663 0.91391 0.96598 0.84081 0.84975 0.99207 0.98873 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.79 9.14 71.23 0.65 -2.14 16 2 C -0.06 -1.79 5.88 -19.86 -0.12 -1.91 16 3 C -0.13 -3.38 9.65 22.30 0.22 -3.16 16 4 C 0.05 1.51 7.31 22.45 0.16 1.67 16 5 F -0.14 -4.05 17.11 44.97 0.77 -3.28 16 6 C 0.06 1.96 6.71 22.53 0.15 2.11 16 7 O -0.50 -13.85 13.37 -93.00 -1.24 -15.10 16 8 C -0.12 -4.04 8.71 22.36 0.19 -3.85 16 9 C -0.06 -2.11 3.82 -19.87 -0.08 -2.18 16 10 C -0.04 -1.43 1.92 -11.54 -0.02 -1.45 16 11 H 0.08 3.28 5.70 -2.39 -0.01 3.26 16 12 C 0.08 2.98 5.98 86.30 0.52 3.50 16 13 N -0.84 -24.08 9.62 -186.72 -1.80 -25.88 16 14 C 0.04 2.22 4.25 29.85 0.13 2.35 16 15 C -0.53 -28.36 8.34 25.60 0.21 -28.15 16 16 H 0.06 3.32 7.08 -2.91 -0.02 3.30 16 17 C 0.00 0.16 5.46 84.65 0.46 0.62 16 18 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 19 Si 0.96 43.15 29.54 68.60 2.03 45.17 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.06 1.81 6.53 -2.39 -0.02 1.80 16 25 H 0.09 1.68 8.04 -2.39 -0.02 1.66 16 26 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 27 H 0.41 7.68 9.06 -74.05 -0.67 7.01 16 28 H 0.13 4.38 7.12 -2.91 -0.02 4.36 16 29 H 0.07 2.69 6.82 -2.38 -0.02 2.67 16 30 H 0.02 0.57 6.93 -2.39 -0.02 0.55 16 31 H 0.35 8.34 9.08 -89.70 -0.81 7.53 16 32 H 0.34 9.14 8.07 -89.70 -0.72 8.41 16 33 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 34 H -0.01 -0.38 7.90 -2.39 -0.02 -0.40 16 35 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -63.64 296.40 1.46 -62.18 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -1.06 Total: 24.51 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 2.48 Total: -32.61 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -1.51 Total: -80.88 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -1.24 Total: -15.10 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.77 Total: -3.28 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -63.64 1.46 -62.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260147585.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.692 kcal (2) G-P(sol) polarization free energy of solvation -63.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds