Wall clock time and date at job start Mon Mar 30 2020 07:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38176 * 120.01417 * 2 1 4 4 C 1.38426 * 120.02889 * 179.97438 * 3 2 1 5 5 F 1.35100 * 119.97008 * 180.02562 * 4 3 2 6 6 C 1.38477 * 120.06364 * 0.03676 * 4 3 2 7 7 C 1.50696 * 119.98798 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47388 * 359.95745 * 7 6 4 9 9 C 1.52997 * 109.47286 * 119.95849 * 7 6 4 10 10 N 1.46900 * 109.47098 * 294.93451 * 9 7 6 11 11 C 1.53003 * 109.47154 * 239.95794 * 7 6 4 12 12 C 1.50704 * 109.47138 * 174.16729 * 11 7 6 13 13 H 1.07997 * 119.99794 * 3.31644 * 12 11 7 14 14 C 1.37873 * 119.99835 * 183.31992 * 12 11 7 15 15 N 1.31517 * 120.00225 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99888 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47000 * 89.99985 * 16 14 12 18 18 H 1.48504 * 109.47003 * 209.99863 * 16 14 12 19 19 H 1.48501 * 109.47155 * 329.99741 * 16 14 12 20 20 C 1.38131 * 120.02983 * 359.96224 * 6 4 3 21 21 C 1.38687 * 120.01597 * 179.97438 * 2 1 3 22 22 O 1.35945 * 120.02974 * 0.04931 * 21 2 1 23 23 H 1.09001 * 109.47833 * 270.02508 * 1 2 3 24 24 H 1.09005 * 109.47478 * 30.02962 * 1 2 3 25 25 H 1.09002 * 109.47097 * 150.02468 * 1 2 3 26 26 H 1.07994 * 119.98352 * 359.97151 * 3 2 1 27 27 H 1.08997 * 109.47044 * 54.93522 * 9 7 6 28 28 H 1.08997 * 109.47136 * 174.93786 * 9 7 6 29 29 H 1.00899 * 111.00083 * 174.02927 * 10 9 7 30 30 H 1.00893 * 111.00253 * 297.98272 * 10 9 7 31 31 H 1.08992 * 109.47404 * 294.16678 * 11 7 6 32 32 H 1.09000 * 109.46768 * 54.16968 * 11 7 6 33 33 H 0.97004 * 119.99872 * 180.02562 * 15 14 12 34 34 H 1.07998 * 120.01554 * 180.29703 * 20 6 4 35 35 H 0.96700 * 114.00005 * 269.97922 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1965 0.0000 4 6 3.5824 1.1968 0.0005 5 9 4.2570 2.3673 0.0011 6 6 4.2764 -0.0015 0.0003 7 6 5.7834 0.0009 0.0015 8 1 6.1451 1.0291 0.0016 9 6 6.2936 -0.7194 1.2511 10 7 5.9042 0.0396 2.4471 11 6 6.2955 -0.7197 -1.2473 12 6 7.7955 -0.5935 -1.3205 13 1 8.3352 -0.0999 -0.5259 14 6 8.4786 -1.1081 -2.4019 15 7 7.8212 -1.7087 -3.3698 16 14 10.3378 -0.9511 -2.4929 17 1 10.9664 -2.1324 -1.8491 18 1 10.7594 -0.8795 -3.9150 19 1 10.7654 0.2835 -1.7871 20 6 3.5880 -1.1990 0.0003 21 6 2.2007 -1.2009 0.0005 22 8 1.5220 -2.3787 0.0001 23 1 -0.3635 0.0004 1.0276 24 1 -0.3634 0.8897 -0.5143 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6581 2.1317 -0.0005 27 1 5.8596 -1.7182 1.2974 28 1 7.3799 -0.7969 1.2078 29 1 6.1438 -0.4633 3.2884 30 1 6.3211 0.9583 2.4439 31 1 6.0216 -1.7734 -1.1968 32 1 5.8494 -0.2704 -2.1346 33 1 8.3020 -2.0711 -4.1304 34 1 4.1295 -2.1334 0.0050 35 1 1.3252 -2.7196 0.8833 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260155517.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:00 Heat of formation + Delta-G solvation = -108.653477 kcal Electronic energy + Delta-G solvation = -18738.383225 eV Core-core repulsion = 15649.045291 eV Total energy + Delta-G solvation = -3089.337934 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -49.79579 -40.88817 -38.38676 -36.78707 -34.86802 -33.68734 -31.81949 -30.45124 -28.50416 -26.44629 -24.66132 -24.02834 -22.76465 -20.99759 -19.10392 -18.59451 -17.88760 -17.74599 -16.80721 -16.61773 -16.39212 -15.96790 -15.49836 -15.06005 -14.92908 -14.72757 -14.45879 -14.13606 -13.71537 -13.65348 -13.26980 -13.03222 -12.84223 -12.77282 -12.68551 -12.39034 -12.23447 -11.64503 -11.57018 -11.36563 -11.08203 -10.58310 -9.73726 -9.52393 -9.18378 -8.20953 -6.32122 0.16696 0.28969 1.38134 1.39548 1.50278 2.38538 2.53419 3.11971 3.28166 3.37296 3.69178 3.76293 3.85647 4.06428 4.28530 4.39727 4.49235 4.70381 4.74822 4.87941 4.90294 4.96586 5.03065 5.06435 5.22074 5.33113 5.35966 5.44698 5.49051 5.69608 5.79902 5.90435 6.18189 6.25200 6.67899 6.82170 6.88830 7.36618 8.90757 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025076 B = 0.005955 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.334104 B = 4701.188292 C = 4979.975084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.098 4.098 3 C -0.136 4.136 4 C 0.070 3.930 5 F -0.149 7.149 6 C -0.074 4.074 7 C -0.036 4.036 8 H 0.057 0.943 9 C 0.089 3.911 10 N -0.846 5.846 11 C 0.045 3.955 12 C -0.534 4.534 13 H 0.062 0.938 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.963 3.037 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.264 1.264 20 C -0.123 4.123 21 C 0.097 3.903 22 O -0.498 6.498 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.160 0.840 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.349 0.651 30 H 0.341 0.659 31 H -0.001 1.001 32 H -0.017 1.017 33 H 0.263 0.737 34 H 0.123 0.877 35 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.500 2.661 11.414 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.099 4.099 3 C -0.155 4.155 4 C 0.051 3.949 5 F -0.128 7.128 6 C -0.075 4.075 7 C -0.055 4.055 8 H 0.075 0.925 9 C -0.042 4.042 10 N -0.376 5.376 11 C 0.007 3.993 12 C -0.572 4.572 13 H 0.080 0.920 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.787 3.213 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.141 4.141 21 C 0.052 3.948 22 O -0.311 6.311 23 H 0.109 0.891 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.177 0.823 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.162 0.838 30 H 0.153 0.847 31 H 0.017 0.983 32 H 0.001 0.999 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -13.173 2.591 10.382 16.971 hybrid contribution 2.410 0.012 0.114 2.412 sum -10.764 2.603 10.496 15.258 Atomic orbital electron populations 1.20711 0.87518 1.03901 1.03773 1.20230 0.98482 0.90737 1.00454 1.21064 0.90883 1.00145 1.03373 1.17746 0.90808 0.80572 1.05740 1.91413 1.80926 1.46190 1.94271 1.19799 0.96404 0.91975 0.99282 1.20062 0.89317 0.99829 0.96297 0.92487 1.21540 0.97391 0.96429 0.88835 1.58685 1.67708 1.07019 1.04170 1.18920 0.95016 0.94094 0.91271 1.21567 0.93053 1.36809 1.05756 0.91982 1.25946 1.03609 0.94842 0.95228 1.70111 1.37666 1.39192 1.10281 0.85482 0.79458 0.78964 0.77363 1.19560 1.20947 1.18854 1.21113 0.94048 0.97602 1.01366 1.18233 0.88896 0.85975 1.01665 1.84767 1.75738 1.35385 1.35206 0.89130 0.90117 0.90751 0.82270 0.91681 0.95253 0.83767 0.84717 0.98270 0.99885 0.92791 0.85900 0.73334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.79 71.24 0.70 -1.10 16 2 C -0.10 -2.57 5.89 -19.77 -0.12 -2.69 16 3 C -0.14 -3.88 9.68 22.30 0.22 -3.66 16 4 C 0.07 2.53 7.24 22.37 0.16 2.69 16 5 F -0.15 -5.62 16.19 44.97 0.73 -4.90 16 6 C -0.07 -2.87 4.52 -19.83 -0.09 -2.96 16 7 C -0.04 -1.56 2.15 -11.54 -0.02 -1.58 16 8 H 0.06 2.59 7.12 -2.39 -0.02 2.57 16 9 C 0.09 3.29 5.95 86.30 0.51 3.80 16 10 N -0.85 -24.92 9.31 -186.73 -1.74 -26.65 16 11 C 0.04 2.40 4.17 29.85 0.12 2.52 16 12 C -0.53 -30.25 8.40 25.60 0.22 -30.03 16 13 H 0.06 3.36 7.01 -2.91 -0.02 3.34 16 14 C 0.00 0.10 5.46 84.65 0.46 0.56 16 15 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 16 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 C -0.12 -4.41 8.65 22.36 0.19 -4.22 16 21 C 0.10 2.89 6.68 22.49 0.15 3.04 16 22 O -0.50 -12.32 12.55 -92.93 -1.17 -13.48 16 23 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.08 1.20 8.09 -2.38 -0.02 1.19 16 25 H 0.07 1.33 7.53 -2.39 -0.02 1.31 16 26 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 27 H 0.06 2.38 7.22 -2.39 -0.02 2.37 16 28 H 0.03 1.17 6.81 -2.39 -0.02 1.15 16 29 H 0.35 8.29 9.08 -89.70 -0.81 7.47 16 30 H 0.34 9.65 9.05 -89.70 -0.81 8.84 16 31 H 0.00 -0.06 7.61 -2.39 -0.02 -0.08 16 32 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 33 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 34 H 0.12 4.59 7.14 -2.91 -0.02 4.56 16 35 H 0.41 5.70 9.06 -74.06 -0.67 5.03 16 Total: -1.00 -69.36 299.12 1.48 -67.88 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -1.16 Total: 21.42 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 2.50 Total: -33.62 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -1.45 Total: -83.73 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -1.17 Total: -13.48 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.73 Total: -4.90 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -69.36 1.48 -67.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260155517.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.774 kcal (2) G-P(sol) polarization free energy of solvation -69.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds