Wall clock time and date at job start Mon Mar 30 2020 07:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38177 * 120.01139 * 2 1 4 4 C 1.38436 * 120.02995 * 180.02562 * 3 2 1 5 5 F 1.35100 * 119.96802 * 179.97438 * 4 3 2 6 6 C 1.38479 * 120.05999 * 359.69954 * 4 3 2 7 7 C 1.50693 * 119.98466 * 180.29572 * 6 4 3 8 8 H 1.09001 * 109.47105 * 0.25768 * 7 6 4 9 9 C 1.52995 * 109.47325 * 240.25267 * 7 6 4 10 10 N 1.46907 * 109.47098 * 65.00380 * 9 7 6 11 11 C 1.53006 * 109.46838 * 120.25524 * 7 6 4 12 12 C 1.50700 * 109.47021 * 185.00215 * 11 7 6 13 13 H 1.08004 * 120.00110 * 359.97438 * 12 11 7 14 14 C 1.37878 * 119.99961 * 180.02562 * 12 11 7 15 15 N 1.31516 * 120.00109 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99906 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47150 * 60.00194 * 16 14 12 18 18 H 1.48498 * 109.46910 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47423 * 299.99912 * 16 14 12 20 20 C 1.38128 * 120.02779 * 0.55442 * 6 4 3 21 21 C 1.38677 * 120.02029 * 179.97438 * 2 1 3 22 22 O 1.35945 * 120.02909 * 0.04434 * 21 2 1 23 23 H 1.09002 * 109.47344 * 270.02307 * 1 2 3 24 24 H 1.08993 * 109.47673 * 30.02299 * 1 2 3 25 25 H 1.09006 * 109.46798 * 150.02886 * 1 2 3 26 26 H 1.08004 * 119.98722 * 359.97404 * 3 2 1 27 27 H 1.09004 * 109.47329 * 185.00374 * 9 7 6 28 28 H 1.09000 * 109.47135 * 305.00543 * 9 7 6 29 29 H 1.00901 * 111.00017 * 180.02562 * 10 9 7 30 30 H 1.00905 * 110.99331 * 303.95455 * 10 9 7 31 31 H 1.09000 * 109.47051 * 305.00101 * 11 7 6 32 32 H 1.08996 * 109.47077 * 65.00380 * 11 7 6 33 33 H 0.96994 * 119.99945 * 180.02562 * 15 14 12 34 34 H 1.08002 * 120.01660 * 179.75122 * 20 6 4 35 35 H 0.96701 * 114.00098 * 269.97556 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1965 0.0000 4 6 3.5825 1.1970 -0.0005 5 9 4.2569 2.3676 -0.0011 6 6 4.2765 -0.0013 0.0052 7 6 5.7834 0.0012 0.0114 8 1 6.1450 1.0294 0.0150 9 6 6.2997 -0.7167 -1.2372 10 7 5.9148 0.0437 -2.4337 11 6 6.2895 -0.7218 1.2613 12 6 7.7909 -0.6131 1.3312 13 1 8.3303 -0.0819 0.5609 14 6 8.4761 -1.1927 2.3779 15 7 7.8193 -1.8400 3.3156 16 14 10.3373 -1.0585 2.4641 17 1 10.7280 0.3727 2.5284 18 1 10.8284 -1.7601 3.6773 19 1 10.9350 -1.6810 1.2557 20 6 3.5881 -1.1989 -0.0001 21 6 2.2008 -1.2007 0.0005 22 8 1.5221 -2.3786 0.0002 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8897 -0.5141 25 1 -0.3633 -0.8903 -0.5134 26 1 1.6580 2.1318 -0.0004 27 1 7.3860 -0.7933 -1.1892 28 1 5.8669 -1.7159 -1.2869 29 1 6.2441 -0.4105 -3.2723 30 1 4.9161 0.1840 -2.4671 31 1 5.8504 -0.2648 2.1481 32 1 6.0031 -1.7724 1.2143 33 1 8.3013 -2.2474 4.0521 34 1 4.1296 -2.1333 0.0003 35 1 1.3254 -2.7196 0.8834 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260155520.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:08 Heat of formation + Delta-G solvation = -108.409277 kcal Electronic energy + Delta-G solvation = -18765.319013 eV Core-core repulsion = 15675.991668 eV Total energy + Delta-G solvation = -3089.327345 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.84180 -40.98994 -38.46057 -36.80948 -34.88759 -33.65289 -31.88917 -30.52127 -28.50475 -26.51967 -24.66517 -24.08037 -22.82525 -20.99685 -19.01202 -18.63060 -17.91818 -17.83629 -17.04374 -16.56233 -16.30975 -16.14376 -15.60264 -15.09426 -14.87020 -14.76569 -14.27410 -14.12430 -14.07629 -13.69884 -13.08198 -13.01869 -12.88302 -12.79643 -12.68289 -12.37993 -12.32031 -11.78377 -11.56327 -11.37864 -11.04673 -10.55588 -9.81542 -9.62047 -9.26477 -8.20153 -6.30093 0.06756 0.17508 1.39941 1.42456 1.50232 2.38547 2.43360 3.12945 3.24252 3.30436 3.64638 3.70387 3.80412 4.01556 4.27400 4.32932 4.40134 4.66313 4.70683 4.82809 4.85904 4.91429 4.98523 5.08927 5.24188 5.29434 5.32134 5.42569 5.44904 5.68410 5.80774 5.81802 6.20551 6.22632 6.62061 6.80319 6.83380 7.38350 8.91271 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025179 B = 0.005975 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.770802 B = 4684.810873 C = 4986.749710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.091 4.091 3 C -0.133 4.133 4 C 0.074 3.926 5 F -0.147 7.147 6 C -0.098 4.098 7 C -0.037 4.037 8 H 0.059 0.941 9 C 0.089 3.911 10 N -0.848 5.848 11 C 0.048 3.952 12 C -0.536 4.536 13 H 0.060 0.940 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.960 3.040 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.266 1.266 20 C -0.123 4.123 21 C 0.099 3.901 22 O -0.497 6.497 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.163 0.837 27 H 0.068 0.932 28 H 0.024 0.976 29 H 0.349 0.651 30 H 0.337 0.663 31 H -0.015 1.015 32 H 0.002 0.998 33 H 0.264 0.736 34 H 0.124 0.876 35 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.684 1.894 -7.598 16.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.092 4.092 3 C -0.152 4.152 4 C 0.055 3.945 5 F -0.126 7.126 6 C -0.099 4.099 7 C -0.056 4.056 8 H 0.078 0.922 9 C -0.042 4.042 10 N -0.379 5.379 11 C 0.010 3.990 12 C -0.573 4.573 13 H 0.078 0.922 14 C -0.193 4.193 15 N -0.571 5.571 16 Si 0.785 3.215 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.190 1.190 20 C -0.141 4.141 21 C 0.054 3.946 22 O -0.310 6.310 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.180 0.820 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.162 0.838 30 H 0.149 0.851 31 H 0.003 0.997 32 H 0.020 0.980 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -14.154 2.468 -7.741 16.320 hybrid contribution 0.904 -0.834 0.773 1.453 sum -13.249 1.634 -6.968 15.059 Atomic orbital electron populations 1.20740 0.87387 1.04256 1.03723 1.20269 0.98563 0.90637 0.99710 1.21120 0.90709 1.00304 1.03048 1.17798 0.90828 0.80562 1.05330 1.91445 1.80934 1.46084 1.94125 1.19978 0.96604 0.92170 1.01153 1.20070 0.88923 1.00276 0.96301 0.92223 1.21574 1.00374 0.93404 0.88841 1.58724 1.19467 1.54976 1.04702 1.18892 0.94943 0.94090 0.91027 1.21554 0.93113 1.34115 1.08554 0.92230 1.25884 1.03439 0.94801 0.95195 1.70077 1.37622 1.36645 1.12770 0.85577 0.79660 0.78523 0.77772 1.19602 1.20775 1.19047 1.21169 0.94131 0.97551 1.01290 1.18233 0.88789 0.86092 1.01516 1.84724 1.75676 1.35311 1.35299 0.89564 0.89682 0.90370 0.81954 0.91313 0.95797 0.83763 0.85064 0.99685 0.97951 0.92772 0.85799 0.73264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 9.79 71.23 0.70 -0.92 16 2 C -0.09 -2.16 5.89 -19.77 -0.12 -2.27 16 3 C -0.13 -3.47 9.68 22.30 0.22 -3.26 16 4 C 0.07 2.52 7.24 22.37 0.16 2.68 16 5 F -0.15 -5.48 16.19 44.97 0.73 -4.75 16 6 C -0.10 -3.65 3.82 -19.84 -0.08 -3.73 16 7 C -0.04 -1.60 2.17 -11.54 -0.03 -1.63 16 8 H 0.06 2.84 7.12 -2.39 -0.02 2.82 16 9 C 0.09 3.45 6.03 86.30 0.52 3.97 16 10 N -0.85 -27.38 9.62 -186.71 -1.80 -29.18 16 11 C 0.05 2.55 4.19 29.85 0.12 2.68 16 12 C -0.54 -30.53 8.34 25.60 0.21 -30.32 16 13 H 0.06 3.31 7.08 -2.91 -0.02 3.29 16 14 C 0.00 0.28 5.46 84.65 0.46 0.74 16 15 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 16 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 C -0.12 -4.14 8.64 22.36 0.19 -3.95 16 21 C 0.10 2.69 6.68 22.49 0.15 2.84 16 22 O -0.50 -11.27 12.55 -92.93 -1.17 -12.43 16 23 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 25 H 0.08 1.19 7.53 -2.38 -0.02 1.17 16 26 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 27 H 0.07 2.94 6.82 -2.39 -0.02 2.92 16 28 H 0.02 0.90 7.22 -2.39 -0.02 0.89 16 29 H 0.35 9.28 9.08 -89.69 -0.81 8.47 16 30 H 0.34 10.34 8.07 -89.69 -0.72 9.62 16 31 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 32 H 0.00 0.12 7.57 -2.39 -0.02 0.10 16 33 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.12 4.41 7.13 -2.91 -0.02 4.39 16 35 H 0.41 5.74 9.06 -74.06 -0.67 5.07 16 Total: -1.00 -67.89 297.83 1.53 -66.36 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -1.07 Total: 22.64 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 2.52 Total: -33.16 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -1.51 Total: -85.29 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -1.17 Total: -12.43 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.73 Total: -4.75 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -67.89 1.53 -66.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260155520.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.051 kcal (2) G-P(sol) polarization free energy of solvation -67.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds