Wall clock time and date at job start Mon Mar 30 2020 07:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38169 * 120.02042 * 2 1 4 4 C 1.38430 * 120.03389 * 180.02562 * 3 2 1 5 5 F 1.35099 * 119.97199 * 179.97438 * 4 3 2 6 6 C 1.38481 * 120.06054 * 359.97438 * 4 3 2 7 7 C 1.50697 * 119.98648 * 179.97438 * 6 4 3 8 8 C 1.38129 * 120.02814 * 359.97438 * 6 4 3 9 9 C 1.50695 * 120.01562 * 179.97438 * 8 6 4 10 10 H 1.09004 * 109.47496 * 357.49304 * 9 8 6 11 11 C 1.50700 * 109.47757 * 237.48782 * 9 8 6 12 12 H 1.08007 * 119.99547 * 354.89695 * 11 9 8 13 13 C 1.37875 * 120.00286 * 174.89985 * 11 9 8 14 14 N 1.31511 * 119.99928 * 1.29783 * 13 11 9 15 15 Si 1.86803 * 119.99760 * 181.29652 * 13 11 9 16 16 H 1.48502 * 109.46904 * 89.99899 * 15 13 11 17 17 H 1.48502 * 109.46880 * 209.99721 * 15 13 11 18 18 H 1.48496 * 109.47167 * 329.99725 * 15 13 11 19 19 C 1.53008 * 109.46936 * 117.48569 * 9 8 6 20 20 N 1.46895 * 109.47141 * 295.23521 * 19 9 8 21 21 C 1.38688 * 120.01282 * 179.71850 * 2 1 3 22 22 O 1.35948 * 120.02925 * 359.97438 * 21 2 1 23 23 H 1.09004 * 109.46984 * 90.00147 * 1 2 3 24 24 H 1.08996 * 109.47434 * 210.00306 * 1 2 3 25 25 H 1.09001 * 109.47317 * 330.00580 * 1 2 3 26 26 H 1.07996 * 119.98195 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47016 * 96.09520 * 7 6 4 28 28 H 1.09005 * 109.46963 * 216.09641 * 7 6 4 29 29 H 1.09002 * 109.47264 * 336.09312 * 7 6 4 30 30 H 0.97000 * 119.99707 * 180.02562 * 14 13 11 31 31 H 1.08999 * 109.46583 * 55.23873 * 19 9 8 32 32 H 1.08998 * 109.46709 * 175.23658 * 19 9 8 33 33 H 1.00901 * 111.00040 * 184.17915 * 20 19 9 34 34 H 1.00897 * 111.00298 * 308.13601 * 20 19 9 35 35 H 0.96701 * 114.00310 * 89.99700 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1963 0.0000 4 6 3.5825 1.1967 -0.0005 5 9 4.2572 2.3671 -0.0011 6 6 4.2765 -0.0017 -0.0005 7 6 5.7834 0.0006 -0.0017 8 6 3.5880 -1.1992 0.0005 9 6 4.3434 -2.5031 -0.0001 10 1 5.4139 -2.3029 -0.0463 11 6 3.9332 -3.3210 -1.1975 12 1 3.1404 -2.9729 -1.8432 13 6 4.5698 -4.5135 -1.4687 14 7 5.5175 -4.9499 -0.6682 15 14 4.0859 -5.5094 -2.9733 16 1 4.9144 -5.0896 -4.1320 17 1 4.3072 -6.9528 -2.7035 18 1 2.6517 -5.2773 -3.2802 19 6 4.0245 -3.2779 1.2803 20 7 4.5272 -2.5323 2.4418 21 6 2.2007 -1.2009 0.0059 22 8 1.5218 -2.3787 0.0122 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 1.6583 2.1316 0.0004 27 1 6.1477 -0.1075 1.0199 28 1 6.1476 -0.8296 -0.6071 29 1 6.1450 0.9404 -0.4189 30 1 5.9656 -5.7887 -0.8593 31 1 2.9455 -3.4045 1.3689 32 1 4.5032 -4.2563 1.2415 33 1 4.3897 -3.0548 3.2940 34 1 5.4984 -2.2866 2.3211 35 1 1.3250 -2.7240 -0.8693 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260182381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:27 Heat of formation + Delta-G solvation = -80.437694 kcal Electronic energy + Delta-G solvation = -19451.860161 eV Core-core repulsion = 16363.745755 eV Total energy + Delta-G solvation = -3088.114406 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -48.35067 -39.49780 -35.85417 -35.31023 -32.77972 -32.18819 -29.68051 -28.93493 -27.15920 -24.40644 -23.94639 -22.29036 -20.56753 -19.32567 -17.39199 -16.89994 -16.31323 -15.78558 -15.16721 -14.77481 -14.57093 -14.33228 -13.48756 -13.40524 -13.22861 -12.86963 -12.62125 -12.56880 -12.21423 -11.97594 -11.71285 -11.57895 -11.19412 -11.09169 -11.02973 -10.62559 -10.55254 -10.20722 -9.91497 -9.46987 -9.10701 -8.50771 -7.81762 -7.61529 -7.50842 -6.14073 -4.20385 1.74643 1.92363 3.21922 3.29649 3.30495 4.10518 4.32934 4.82193 4.98661 5.16735 5.27935 5.34858 5.56488 5.77460 5.81207 5.88377 5.96512 6.03763 6.22326 6.24384 6.45519 6.62354 6.68303 6.74221 6.78079 6.99103 7.09179 7.21749 7.42199 7.52481 7.78423 7.87872 8.05068 8.36199 8.39239 8.51155 8.81396 9.43268 10.91728 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020534 B = 0.008398 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.284479 B = 3333.415155 C = 3705.531734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.103 4.103 3 C -0.165 4.165 4 C 0.079 3.921 5 F -0.150 7.150 6 C -0.114 4.114 7 C -0.109 4.109 8 C -0.009 4.009 9 C 0.083 3.917 10 H 0.045 0.955 11 C -0.505 4.505 12 H 0.054 0.946 13 C 0.065 3.935 14 N -0.888 5.888 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.066 3.934 20 N -0.858 5.858 21 C 0.110 3.890 22 O -0.481 6.481 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.124 0.876 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.262 0.738 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.319 0.681 34 H 0.326 0.674 35 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.676 7.021 1.194 8.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.104 4.104 3 C -0.184 4.184 4 C 0.060 3.940 5 F -0.129 7.129 6 C -0.115 4.115 7 C -0.166 4.166 8 C -0.010 4.010 9 C 0.065 3.935 10 H 0.063 0.937 11 C -0.543 4.543 12 H 0.072 0.928 13 C -0.137 4.137 14 N -0.526 5.526 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.063 4.063 20 N -0.384 5.384 21 C 0.065 3.935 22 O -0.291 6.291 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.141 0.859 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.060 7.501 1.614 9.191 hybrid contribution 0.540 -1.225 -1.206 1.802 sum -4.521 6.276 0.408 7.745 Atomic orbital electron populations 1.20597 0.91067 1.02671 1.01766 1.19907 0.96180 0.92131 1.02176 1.20509 0.91907 0.98130 1.07899 1.17462 0.89830 0.80629 1.06037 1.91394 1.80649 1.46457 1.94395 1.19627 0.96759 0.91005 1.04138 1.20706 0.90866 1.02471 1.02522 1.20529 0.92898 0.96080 0.91511 1.17917 0.95305 0.86686 0.93609 0.93686 1.20872 1.19360 1.05040 1.09064 0.92800 1.24935 0.94876 0.97397 0.96490 1.69893 1.24273 1.21562 1.36882 0.86572 0.78947 0.79338 0.83024 1.20713 1.21252 1.19811 1.22056 0.99427 0.96603 0.88242 1.59071 1.23761 1.50234 1.05367 1.18025 0.89479 0.84635 1.01382 1.84734 1.75635 1.35580 1.33180 0.91793 0.90856 0.92153 0.85850 0.91330 0.89966 0.92562 0.92833 0.91769 0.92810 0.87119 0.86361 0.75979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 9.79 36.00 0.35 -1.08 16 2 C -0.10 -1.80 5.89 -104.48 -0.62 -2.41 16 3 C -0.17 -2.84 9.68 -39.54 -0.38 -3.22 16 4 C 0.08 1.49 7.24 -39.42 -0.29 1.20 16 5 F -0.15 -2.70 16.37 2.25 0.04 -2.66 16 6 C -0.11 -2.28 5.88 -104.57 -0.62 -2.90 16 7 C -0.11 -1.98 9.10 36.00 0.33 -1.65 16 8 C -0.01 -0.20 4.48 -104.48 -0.47 -0.67 16 9 C 0.08 1.95 1.68 -92.92 -0.16 1.79 16 10 H 0.05 1.13 5.56 -51.93 -0.29 0.84 16 11 C -0.50 -12.61 7.37 -34.44 -0.25 -12.87 16 12 H 0.05 1.31 6.50 -52.48 -0.34 0.97 16 13 C 0.07 1.67 5.32 -17.82 -0.09 1.58 16 14 N -0.89 -23.76 11.63 55.43 0.64 -23.11 16 15 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 19 C 0.07 1.52 5.93 -3.82 -0.02 1.50 16 20 N -0.86 -17.03 9.36 -10.37 -0.10 -17.13 16 21 C 0.11 2.18 6.09 -39.23 -0.24 1.94 16 22 O -0.48 -9.30 9.50 -19.58 -0.19 -9.48 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.07 1.02 7.52 -51.93 -0.39 0.63 16 25 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.08 1.59 6.40 -51.93 -0.33 1.26 16 29 H 0.06 0.92 7.47 -51.93 -0.39 0.53 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.43 16 31 H 0.06 1.54 6.22 -51.93 -0.32 1.21 16 32 H 0.05 1.37 6.34 -51.93 -0.33 1.04 16 33 H 0.32 5.67 9.08 -39.29 -0.36 5.31 16 34 H 0.33 6.26 8.93 -39.29 -0.35 5.91 16 35 H 0.38 6.50 7.95 45.56 0.36 6.87 16 LS Contribution 288.87 15.07 4.35 4.35 Total: -1.00 -27.36 288.87 -6.28 -33.65 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -3.56 Total: 16.18 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.45 Total: -16.79 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.55 Total: -40.24 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.19 Total: -9.48 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.36 -6.28 -33.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260182381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.791 kcal (2) G-P(sol) polarization free energy of solvation -27.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds