Wall clock time and date at job start Mon Mar 30 2020 07:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38178 * 120.01099 * 2 1 4 4 C 1.38436 * 120.02414 * 179.97438 * 3 2 1 5 5 F 1.35101 * 119.96545 * 179.97438 * 4 3 2 6 6 C 1.38473 * 120.06221 * 359.74924 * 4 3 2 7 7 C 1.50700 * 119.98312 * 180.25555 * 6 4 3 8 8 C 1.38126 * 120.02939 * 0.50116 * 6 4 3 9 9 C 1.50703 * 120.01370 * 179.77585 * 8 6 4 10 10 H 1.08997 * 109.47078 * 358.14624 * 9 8 6 11 11 C 1.50697 * 109.47582 * 118.15190 * 9 8 6 12 12 H 1.08004 * 119.99805 * 28.50853 * 11 9 8 13 13 C 1.37867 * 120.00231 * 208.51438 * 11 9 8 14 14 N 1.31520 * 120.00264 * 1.39336 * 13 11 9 15 15 Si 1.86805 * 120.00341 * 181.39586 * 13 11 9 16 16 H 1.48503 * 109.46904 * 270.00320 * 15 13 11 17 17 H 1.48500 * 109.46653 * 29.99522 * 15 13 11 18 18 H 1.48500 * 109.47341 * 149.99868 * 15 13 11 19 19 C 1.53004 * 109.46829 * 238.15279 * 9 8 6 20 20 N 1.46894 * 109.47258 * 64.28004 * 19 9 8 21 21 C 1.38683 * 120.01492 * 179.97438 * 2 1 3 22 22 O 1.35944 * 120.03309 * 0.04498 * 21 2 1 23 23 H 1.09010 * 109.46807 * 270.02219 * 1 2 3 24 24 H 1.08998 * 109.47538 * 30.02158 * 1 2 3 25 25 H 1.08998 * 109.47426 * 150.02417 * 1 2 3 26 26 H 1.07995 * 119.98507 * 359.97438 * 3 2 1 27 27 H 1.09005 * 109.47050 * 263.67081 * 7 6 4 28 28 H 1.08993 * 109.47769 * 23.67223 * 7 6 4 29 29 H 1.09008 * 109.47208 * 143.67575 * 7 6 4 30 30 H 0.97000 * 119.99824 * 354.58491 * 14 13 11 31 31 H 1.09005 * 109.47026 * 184.28161 * 19 9 8 32 32 H 1.09002 * 109.46746 * 304.27778 * 19 9 8 33 33 H 1.00901 * 110.99926 * 56.04972 * 20 19 9 34 34 H 1.00903 * 110.99946 * 180.02562 * 20 19 9 35 35 H 0.96699 * 113.99879 * 269.97404 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1965 0.0000 4 6 3.5825 1.1968 0.0005 5 9 4.2570 2.3674 0.0000 6 6 4.2764 -0.0014 0.0063 7 6 5.7834 0.0010 0.0127 8 6 3.5880 -1.1989 0.0011 9 6 4.3436 -2.5028 0.0023 10 1 5.4146 -2.3021 -0.0257 11 6 4.0098 -3.2758 1.2521 12 1 3.0491 -3.1446 1.7278 13 6 4.9308 -4.1504 1.7884 14 7 6.1110 -4.2898 1.2249 15 14 4.5026 -5.1377 3.3153 16 1 4.8951 -4.3722 4.5258 17 1 3.0402 -5.3944 3.3446 18 1 5.2319 -6.4310 3.2893 19 6 3.9463 -3.3236 -1.2264 20 7 4.3644 -2.6161 -2.4439 21 6 2.2007 -1.2008 0.0005 22 8 1.5220 -2.3787 0.0001 23 1 -0.3633 0.0004 1.0278 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8902 -0.5134 26 1 1.6581 2.1317 -0.0004 27 1 6.1512 -0.1141 -1.0069 28 1 6.1435 0.9437 0.4246 29 1 6.1455 -0.8250 0.6250 30 1 6.3058 -3.8379 0.3890 31 1 4.4345 -4.2974 -1.1862 32 1 2.8649 -3.4595 -1.2382 33 1 5.3542 -2.4209 -2.4269 34 1 4.1127 -3.1381 -3.2699 35 1 1.3254 -2.7196 0.8834 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260182382.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:33 Heat of formation + Delta-G solvation = -103.170302 kcal Electronic energy + Delta-G solvation = -19487.126475 eV Core-core repulsion = 16398.026310 eV Total energy + Delta-G solvation = -3089.100166 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -49.83432 -41.09370 -37.45853 -37.22220 -34.38161 -34.25138 -31.24831 -30.31265 -28.66578 -25.80957 -25.73112 -24.03163 -22.19260 -21.28448 -19.20625 -18.67236 -18.08235 -17.41547 -16.69935 -16.48239 -16.09158 -15.72731 -15.44710 -15.25683 -14.72718 -14.41593 -14.15299 -14.03610 -13.87010 -13.63378 -13.34769 -13.06799 -12.95491 -12.71768 -12.54899 -12.22032 -12.00745 -11.92817 -11.86957 -10.83551 -10.76153 -10.43751 -9.51752 -9.34303 -9.12011 -8.55125 -6.28024 0.22161 0.40893 1.55816 1.62769 1.78568 2.53743 2.63241 3.22178 3.34146 3.48015 3.82380 3.88518 3.94545 4.14703 4.31692 4.55553 4.62898 4.67293 4.73323 4.78805 4.80272 4.86734 5.02175 5.11606 5.18585 5.26972 5.35188 5.41807 5.58570 5.78571 5.97913 6.05159 6.22693 6.33969 6.60362 6.73561 6.98096 7.49674 8.82091 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.019516 B = 0.008521 C = 0.007810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.349310 B = 3285.259042 C = 3584.481096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.095 4.095 3 C -0.157 4.157 4 C 0.075 3.925 5 F -0.146 7.146 6 C -0.136 4.136 7 C -0.101 4.101 8 C -0.027 4.027 9 C 0.068 3.932 10 H 0.028 0.972 11 C -0.582 4.582 12 H 0.055 0.945 13 C -0.027 4.027 14 N -0.939 5.939 15 Si 1.110 2.890 16 H -0.281 1.281 17 H -0.264 1.264 18 H -0.292 1.292 19 C 0.081 3.919 20 N -0.847 5.847 21 C 0.092 3.908 22 O -0.489 6.489 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.159 0.841 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.257 0.743 31 H -0.012 1.012 32 H 0.074 0.926 33 H 0.332 0.668 34 H 0.338 0.662 35 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 7.645 -2.090 11.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.096 4.096 3 C -0.176 4.176 4 C 0.056 3.944 5 F -0.124 7.124 6 C -0.137 4.137 7 C -0.158 4.158 8 C -0.028 4.028 9 C 0.049 3.951 10 H 0.046 0.954 11 C -0.621 4.621 12 H 0.073 0.927 13 C -0.225 4.225 14 N -0.577 5.577 15 Si 0.933 3.067 16 H -0.207 1.207 17 H -0.188 1.188 18 H -0.218 1.218 19 C -0.049 4.049 20 N -0.375 5.375 21 C 0.048 3.952 22 O -0.301 6.301 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.088 0.912 26 H 0.177 0.823 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.006 0.994 32 H 0.092 0.908 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -8.464 7.245 -1.357 11.224 hybrid contribution 0.673 0.102 -0.887 1.118 sum -7.791 7.348 -2.245 10.942 Atomic orbital electron populations 1.20675 0.87928 1.03760 1.03344 1.20271 0.98336 0.90972 1.00024 1.20919 0.91182 0.99578 1.05891 1.17565 0.90669 0.80210 1.05977 1.91406 1.80759 1.45937 1.94341 1.19754 0.97227 0.91554 1.05205 1.20599 0.90664 1.02177 1.02356 1.20236 0.93728 0.95033 0.93784 1.17941 0.94697 0.89024 0.93478 0.95424 1.22075 1.03632 1.25410 1.10946 0.92695 1.27052 0.92800 0.97441 1.05233 1.70894 1.22480 1.44771 1.19572 0.83016 0.76340 0.74997 0.72362 1.20709 1.18796 1.21770 1.21981 1.00112 0.93188 0.89663 1.58882 1.21724 1.52458 1.04464 1.18172 0.89003 0.85692 1.02377 1.84686 1.75529 1.35897 1.33964 0.89836 0.89676 0.91163 0.82323 0.90752 0.90979 0.92760 0.93202 0.99394 0.90772 0.85695 0.84979 0.75063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.31 9.79 71.24 0.70 -1.62 16 2 C -0.10 -3.02 5.89 -19.77 -0.12 -3.14 16 3 C -0.16 -4.88 9.68 22.30 0.22 -4.66 16 4 C 0.07 2.69 7.24 22.37 0.16 2.85 16 5 F -0.15 -4.99 16.37 44.97 0.74 -4.25 16 6 C -0.14 -5.49 5.88 -19.84 -0.12 -5.61 16 7 C -0.10 -3.87 9.03 71.24 0.64 -3.23 16 8 C -0.03 -1.15 4.49 -19.77 -0.09 -1.24 16 9 C 0.07 3.20 1.53 -12.28 -0.02 3.18 16 10 H 0.03 1.43 4.12 -2.39 -0.01 1.42 16 11 C -0.58 -29.80 7.70 25.60 0.20 -29.61 16 12 H 0.05 2.68 6.00 -2.91 -0.02 2.66 16 13 C -0.03 -1.45 5.46 84.65 0.46 -0.98 16 14 N -0.94 -54.49 13.61 21.44 0.29 -54.20 16 15 Si 1.11 47.74 29.90 68.60 2.05 49.80 16 16 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 17 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 18 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 19 C 0.08 3.63 6.00 86.31 0.52 4.15 16 20 N -0.85 -31.98 9.32 -186.71 -1.74 -33.72 16 21 C 0.09 3.53 6.15 22.49 0.14 3.66 16 22 O -0.49 -17.88 9.31 -92.91 -0.86 -18.74 16 23 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 24 H 0.08 1.57 8.09 -2.39 -0.02 1.56 16 25 H 0.07 1.68 7.53 -2.39 -0.02 1.66 16 26 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 27 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 28 H 0.07 2.46 7.46 -2.39 -0.02 2.44 16 29 H 0.05 2.34 6.52 -2.38 -0.02 2.33 16 30 H 0.26 15.05 6.65 -92.71 -0.62 14.44 16 31 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 32 H 0.07 3.37 5.90 -2.39 -0.01 3.36 16 33 H 0.33 12.18 8.99 -89.69 -0.81 11.37 16 34 H 0.34 11.00 9.08 -89.69 -0.81 10.19 16 35 H 0.39 12.49 7.74 -74.06 -0.57 11.92 16 Total: -1.00 -61.46 289.22 2.28 -59.17 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: -0.88 Total: 38.18 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 2.69 Total: -36.24 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -1.45 Total: -87.92 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.86 Total: -18.74 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.74 Total: -4.25 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.05 Total: 49.80 kcal Total: -61.46 2.28 -59.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260182382.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.998 kcal (2) G-P(sol) polarization free energy of solvation -61.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds