Wall clock time and date at job start Mon Mar 30 2020 06:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38294 * 119.98997 * 2 1 4 4 C 1.38219 * 120.13071 * 180.25072 * 3 2 1 5 5 C 1.50697 * 119.95467 * 179.76550 * 4 3 2 6 6 H 1.08996 * 109.47188 * 219.72610 * 5 4 3 7 7 N 1.46905 * 109.47125 * 339.72389 * 5 4 3 8 8 C 1.53001 * 109.47213 * 99.72232 * 5 4 3 9 9 C 1.50698 * 109.47176 * 174.99984 * 8 5 4 10 10 H 1.07997 * 119.99944 * 359.97438 * 9 8 5 11 11 C 1.37872 * 120.00026 * 180.02562 * 9 8 5 12 12 N 1.31510 * 120.00285 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00057 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47612 * 89.99782 * 13 11 9 15 15 H 1.48505 * 109.47212 * 210.00085 * 13 11 9 16 16 H 1.48502 * 109.47147 * 329.99507 * 13 11 9 17 17 C 1.38224 * 120.09118 * 359.48860 * 4 3 2 18 18 C 1.50697 * 120.01429 * 180.27624 * 17 4 3 19 19 C 1.38621 * 119.96848 * 0.25731 * 17 4 3 20 20 O 1.35959 * 120.06150 * 180.02562 * 19 17 4 21 21 C 1.38289 * 119.98153 * 179.73967 * 2 1 3 22 22 F 1.35101 * 120.05056 * 0.02880 * 21 2 1 23 23 H 1.08997 * 109.47405 * 270.26189 * 1 2 3 24 24 H 1.09001 * 109.46556 * 30.25858 * 1 2 3 25 25 H 1.08996 * 109.47119 * 150.25306 * 1 2 3 26 26 H 1.08010 * 119.93373 * 0.02562 * 3 2 1 27 27 H 1.00901 * 110.99869 * 296.04907 * 7 5 4 28 28 H 1.00896 * 110.99543 * 60.00030 * 7 5 4 29 29 H 1.08997 * 109.47039 * 295.00606 * 8 5 4 30 30 H 1.09001 * 109.46723 * 55.00082 * 8 5 4 31 31 H 0.96998 * 120.00498 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.47415 * 90.00446 * 18 17 4 33 33 H 1.09002 * 109.47106 * 209.99967 * 18 17 4 34 34 H 1.08997 * 109.47343 * 329.99637 * 18 17 4 35 35 H 0.96710 * 113.99768 * 89.99823 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1978 0.0000 4 6 3.5805 1.2012 -0.0052 5 6 4.3297 2.5087 -0.0106 6 1 5.1936 2.4297 -0.6704 7 7 3.4441 3.5786 -0.4892 8 6 4.8000 2.8328 1.4088 9 6 5.6528 4.0750 1.3841 10 1 5.8409 4.5824 0.4495 11 6 6.1937 4.5633 2.5545 12 7 6.9383 5.6471 2.5329 13 14 5.8701 3.6846 4.1709 14 1 6.9253 2.6651 4.4001 15 1 5.8845 4.6702 5.2816 16 1 4.5433 3.0200 4.1160 17 6 4.2765 0.0070 0.0002 18 6 5.7834 0.0127 0.0008 19 6 3.5876 -1.1960 0.0055 20 8 4.2703 -2.3717 0.0114 21 6 2.1981 -1.1978 0.0054 22 9 1.5233 -2.3682 0.0102 23 1 -0.3634 0.0047 1.0276 24 1 -0.3632 0.8877 -0.5179 25 1 -0.3633 -0.8922 -0.5099 26 1 1.6570 2.1325 0.0004 27 1 3.1713 3.4204 -1.4477 28 1 2.6350 3.6717 0.1064 29 1 3.9340 2.9992 2.0494 30 1 5.3843 1.9986 1.7973 31 1 7.3192 5.9904 3.3563 32 1 6.1464 0.0185 1.0286 33 1 6.1504 -0.8781 -0.5091 34 1 6.1436 0.9018 -0.5168 35 1 4.4673 -2.7077 0.8966 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260189858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:05 Heat of formation + Delta-G solvation = -98.180236 kcal Electronic energy + Delta-G solvation = -18854.730749 eV Core-core repulsion = 15765.846969 eV Total energy + Delta-G solvation = -3088.883780 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.95605 -41.20684 -38.55544 -36.77861 -34.60795 -34.03625 -30.98017 -30.30773 -30.03234 -26.49427 -25.73898 -23.63184 -22.43834 -21.06240 -19.19352 -18.75899 -18.20173 -17.90496 -16.99506 -16.80545 -16.18471 -15.94479 -15.52042 -15.24103 -14.74021 -14.50270 -14.43469 -14.13659 -14.06923 -13.84836 -13.40341 -13.28014 -12.95518 -12.67515 -12.51853 -12.39372 -12.19718 -11.78370 -11.65003 -11.54135 -11.22738 -10.68226 -9.64715 -9.46665 -9.37240 -8.17402 -6.17141 -0.00548 0.05887 1.36699 1.39254 1.49116 2.32925 2.41316 2.90870 3.16638 3.28293 3.62959 3.68649 3.84499 4.00881 4.09237 4.36233 4.47690 4.60556 4.63302 4.71141 4.75606 4.78476 4.89266 5.03373 5.08759 5.16174 5.24508 5.31782 5.36669 5.59740 5.70514 5.77493 6.37266 6.52229 6.64578 6.80721 6.92422 7.43880 8.99748 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025193 B = 0.006346 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.156138 B = 4411.249958 C = 4707.423362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.106 4.106 3 C -0.105 4.105 4 C -0.105 4.105 5 C 0.154 3.846 6 H 0.078 0.922 7 N -0.834 5.834 8 C 0.007 3.993 9 C -0.492 4.492 10 H 0.040 0.960 11 C 0.001 3.999 12 N -0.955 5.955 13 Si 0.939 3.061 14 H -0.268 1.268 15 H -0.290 1.290 16 H -0.251 1.251 17 C -0.091 4.091 18 C -0.114 4.114 19 C 0.075 3.925 20 O -0.493 6.493 21 C 0.047 3.953 22 F -0.139 7.139 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.149 0.851 27 H 0.344 0.656 28 H 0.342 0.658 29 H 0.014 0.986 30 H 0.023 0.977 31 H 0.261 0.739 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.714 -15.201 -3.778 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.107 4.107 3 C -0.123 4.123 4 C -0.108 4.108 5 C 0.042 3.958 6 H 0.096 0.904 7 N -0.364 5.364 8 C -0.031 4.031 9 C -0.531 4.531 10 H 0.058 0.942 11 C -0.194 4.194 12 N -0.597 5.597 13 Si 0.763 3.237 14 H -0.193 1.193 15 H -0.216 1.216 16 H -0.175 1.175 17 C -0.092 4.092 18 C -0.170 4.170 19 C 0.029 3.971 20 O -0.305 6.305 21 C 0.027 3.973 22 F -0.118 7.118 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.090 0.910 26 H 0.167 0.833 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.032 0.968 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -11.064 -14.588 -4.144 18.772 hybrid contribution -0.414 -1.001 1.183 1.604 sum -11.478 -15.590 -2.961 19.584 Atomic orbital electron populations 1.20792 0.87864 1.04284 1.03787 1.20062 0.98468 0.90665 1.01474 1.20956 0.92936 0.98100 1.00339 1.21042 0.94744 0.96373 0.98623 1.20199 0.94226 0.83871 0.97552 0.90387 1.58651 1.23314 1.47636 1.06819 1.19490 0.95505 0.95247 0.92843 1.21257 1.28136 1.09477 0.94202 0.94194 1.25883 0.95091 0.95715 1.02746 1.70065 1.36399 1.24664 1.28612 0.85836 0.79926 0.78584 0.79311 1.19348 1.21614 1.17452 1.20056 0.97669 0.91067 1.00446 1.20770 0.89526 1.03582 1.03137 1.18213 0.87998 0.86393 1.04480 1.84766 1.75526 1.35062 1.35182 1.18016 0.89336 0.81764 1.08201 1.91432 1.80064 1.46004 1.94260 0.89737 0.89023 0.91038 0.83319 0.84255 0.84253 0.96750 0.95900 0.92966 0.90601 0.89939 0.91140 0.73367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.83 71.24 0.70 -1.25 16 2 C -0.11 -2.56 5.88 -19.84 -0.12 -2.68 16 3 C -0.11 -2.71 8.90 22.28 0.20 -2.51 16 4 C -0.11 -3.19 5.07 -19.87 -0.10 -3.29 16 5 C 0.15 5.53 2.37 44.17 0.10 5.63 16 6 H 0.08 2.99 6.41 -2.39 -0.02 2.98 16 7 N -0.83 -27.70 8.43 -171.80 -1.45 -29.14 16 8 C 0.01 0.30 3.61 29.85 0.11 0.41 16 9 C -0.49 -27.44 9.39 25.60 0.24 -27.20 16 10 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 11 C 0.00 0.06 5.47 84.65 0.46 0.52 16 12 N -0.96 -59.86 13.96 21.44 0.30 -59.56 16 13 Si 0.94 43.79 27.47 68.60 1.88 45.67 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 15 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 16 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 17 C -0.09 -2.68 5.89 -19.78 -0.12 -2.79 16 18 C -0.11 -3.18 8.70 71.23 0.62 -2.56 16 19 C 0.08 2.07 6.68 22.53 0.15 2.22 16 20 O -0.49 -11.85 12.41 -93.09 -1.16 -13.00 16 21 C 0.05 1.26 7.25 22.45 0.16 1.42 16 22 F -0.14 -3.74 16.32 44.97 0.73 -3.00 16 23 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 25 H 0.07 1.22 7.64 -2.39 -0.02 1.20 16 26 H 0.15 3.24 6.24 -2.91 -0.02 3.22 16 27 H 0.34 9.36 9.06 -89.69 -0.81 8.55 16 28 H 0.34 10.26 7.28 -89.70 -0.65 9.61 16 29 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 30 H 0.02 0.99 6.50 -2.39 -0.02 0.97 16 31 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 32 H 0.08 2.11 7.76 -2.39 -0.02 2.09 16 33 H 0.08 2.03 7.53 -2.39 -0.02 2.02 16 34 H 0.07 2.12 6.12 -2.39 -0.01 2.11 16 35 H 0.41 6.12 9.06 -74.05 -0.67 5.45 16 Total: -1.00 -68.61 291.72 1.69 -66.92 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -1.04 Total: 24.20 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 2.41 Total: -32.08 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -1.15 Total: -88.71 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -1.16 Total: -13.00 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.73 Total: -3.00 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -68.61 1.69 -66.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260189858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.257 kcal (2) G-P(sol) polarization free energy of solvation -68.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds