Wall clock time and date at job start Mon Mar 30 2020 06:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38297 * 119.98429 * 2 1 4 4 C 1.38226 * 120.12386 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.95057 * 179.97438 * 4 3 2 6 6 H 1.08992 * 109.47201 * 144.99998 * 5 4 3 7 7 N 1.46897 * 109.47122 * 24.99599 * 5 4 3 8 8 C 1.53006 * 109.46610 * 264.99639 * 5 4 3 9 9 C 1.50699 * 109.46866 * 185.00088 * 8 5 4 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 5 11 11 C 1.37874 * 120.00270 * 180.02562 * 9 8 5 12 12 N 1.31522 * 119.99834 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00496 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47574 * 89.99780 * 13 11 9 15 15 H 1.48500 * 109.47346 * 209.99892 * 13 11 9 16 16 H 1.48499 * 109.47067 * 329.99541 * 13 11 9 17 17 C 1.38220 * 120.09449 * 0.25128 * 4 3 2 18 18 C 1.50704 * 120.01528 * 179.73244 * 17 4 3 19 19 C 1.38619 * 119.97061 * 359.47803 * 17 4 3 20 20 O 1.35955 * 120.06481 * 180.23018 * 19 17 4 21 21 C 1.38292 * 119.98513 * 180.02562 * 2 1 3 22 22 F 1.35098 * 120.04397 * 359.97438 * 21 2 1 23 23 H 1.08997 * 109.47332 * 89.99690 * 1 2 3 24 24 H 1.09000 * 109.46879 * 209.99450 * 1 2 3 25 25 H 1.08997 * 109.46752 * 329.99242 * 1 2 3 26 26 H 1.07994 * 119.93890 * 0.02562 * 3 2 1 27 27 H 1.00903 * 111.00155 * 299.99620 * 7 5 4 28 28 H 1.00896 * 111.00033 * 63.95930 * 7 5 4 29 29 H 1.08993 * 109.46955 * 305.00306 * 8 5 4 30 30 H 1.09000 * 109.47050 * 65.00135 * 8 5 4 31 31 H 0.96992 * 120.00032 * 180.02562 * 12 11 9 32 32 H 1.08995 * 109.47030 * 90.00114 * 18 17 4 33 33 H 1.09001 * 109.46846 * 210.00550 * 18 17 4 34 34 H 1.09007 * 109.46727 * 329.99675 * 18 17 4 35 35 H 0.96704 * 113.99978 * 270.31433 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1979 0.0000 4 6 3.5805 1.2012 -0.0005 5 6 4.3296 2.5088 -0.0011 6 1 5.2408 2.4057 0.5880 7 7 3.4842 3.5578 0.5842 8 6 4.6917 2.8884 -1.4384 9 6 5.5456 4.1301 -1.4301 10 1 5.8038 4.6016 -0.4934 11 6 5.9963 4.6648 -2.6183 12 7 5.6815 4.0909 -3.7591 13 14 7.0553 6.2035 -2.6080 14 1 8.4872 5.8186 -2.5253 15 1 6.8212 6.9740 -3.8557 16 1 6.6994 7.0415 -1.4348 17 6 4.2764 0.0071 -0.0063 18 6 5.7835 0.0128 -0.0130 19 6 3.5877 -1.1959 -0.0006 20 8 4.2704 -2.3716 -0.0016 21 6 2.1982 -1.1978 -0.0005 22 9 1.5233 -2.3682 -0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6570 2.1324 0.0004 27 1 2.6325 3.6728 0.0555 28 1 3.2844 3.3623 1.5537 29 1 5.2438 2.0708 -1.9020 30 1 3.7800 3.0781 -2.0048 31 1 5.9989 4.4668 -4.5949 32 1 6.1513 0.0119 1.0130 33 1 6.1479 -0.8745 -0.5305 34 1 6.1410 0.9054 -0.5265 35 1 4.4678 -2.7111 -0.8853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260189863.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:09 Heat of formation + Delta-G solvation = -102.235216 kcal Electronic energy + Delta-G solvation = -18767.758865 eV Core-core repulsion = 15678.699247 eV Total energy + Delta-G solvation = -3089.059617 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.95024 -41.17681 -38.53147 -36.74198 -34.63292 -33.99438 -30.57779 -30.21410 -29.92195 -26.48724 -25.78141 -23.88482 -22.47331 -21.03126 -19.11852 -18.44060 -18.20852 -17.88978 -16.94913 -16.74378 -16.26081 -16.04418 -15.49525 -15.11726 -14.71890 -14.38439 -14.23737 -14.10659 -13.97788 -13.76477 -13.32981 -13.07155 -12.93153 -12.68614 -12.60748 -12.38330 -12.24996 -12.07745 -11.62404 -11.37020 -11.15921 -10.48506 -9.64672 -9.46069 -9.34067 -8.09782 -6.15397 0.01192 0.07565 1.44850 1.45757 1.57163 2.33773 2.49773 2.92191 3.24003 3.28361 3.64097 3.73704 3.87457 4.05227 4.10540 4.41020 4.52072 4.60058 4.68470 4.70966 4.74923 4.85246 4.92499 5.03551 5.13739 5.24587 5.26997 5.44498 5.53533 5.70652 5.76261 5.89820 6.31504 6.51452 6.63815 6.82601 6.98886 7.51309 9.01750 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.029593 B = 0.005622 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.931315 B = 4979.303389 C = 5386.396449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.107 4.107 3 C -0.106 4.106 4 C -0.103 4.103 5 C 0.148 3.852 6 H 0.079 0.921 7 N -0.829 5.829 8 C 0.047 3.953 9 C -0.504 4.504 10 H 0.061 0.939 11 C -0.003 4.003 12 N -0.938 5.938 13 Si 0.957 3.043 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.267 1.267 17 C -0.093 4.093 18 C -0.112 4.112 19 C 0.073 3.927 20 O -0.492 6.492 21 C 0.045 3.955 22 F -0.139 7.139 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.146 0.854 27 H 0.340 0.660 28 H 0.343 0.657 29 H 0.000 1.000 30 H -0.011 1.011 31 H 0.259 0.741 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.475 -9.546 7.967 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.108 4.108 3 C -0.125 4.125 4 C -0.106 4.106 5 C 0.036 3.964 6 H 0.097 0.903 7 N -0.359 5.359 8 C 0.010 3.990 9 C -0.542 4.542 10 H 0.079 0.921 11 C -0.200 4.200 12 N -0.580 5.580 13 Si 0.783 3.217 14 H -0.201 1.201 15 H -0.214 1.214 16 H -0.191 1.191 17 C -0.094 4.094 18 C -0.169 4.169 19 C 0.027 3.973 20 O -0.304 6.304 21 C 0.026 3.974 22 F -0.117 7.117 23 H 0.101 0.899 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.164 0.836 27 H 0.155 0.845 28 H 0.156 0.844 29 H 0.018 0.982 30 H 0.008 0.992 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -6.898 -9.007 8.240 14.022 hybrid contribution -0.136 -0.443 -0.883 0.997 sum -7.035 -9.450 7.357 13.890 Atomic orbital electron populations 1.20787 0.87826 1.04331 1.03703 1.20064 0.98506 0.90666 1.01525 1.20932 0.93053 0.98002 1.00463 1.21108 0.94778 0.96645 0.98074 1.20364 0.94605 0.83975 0.97428 0.90309 1.58701 1.23157 1.47669 1.06387 1.18929 0.94827 0.95148 0.90070 1.21491 1.29717 1.10549 0.92449 0.92069 1.25845 0.98171 1.00496 0.95447 1.70094 1.47769 1.42201 0.97938 0.85560 0.79031 0.79754 0.77336 1.20141 1.21419 1.19109 1.20087 0.97768 0.91124 1.00413 1.20758 0.89502 1.03458 1.03142 1.18226 0.88039 0.86401 1.04595 1.84783 1.75550 1.34991 1.35125 1.17988 0.89320 0.81748 1.08381 1.91425 1.80051 1.45963 1.94290 0.89935 0.90872 0.88984 0.83607 0.84530 0.84403 0.98163 0.99228 0.93248 0.89921 0.90240 0.91620 0.73501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 9.83 71.24 0.70 -1.50 16 2 C -0.11 -2.89 5.88 -19.84 -0.12 -3.01 16 3 C -0.11 -3.08 8.92 22.28 0.20 -2.89 16 4 C -0.10 -3.46 5.05 -19.87 -0.10 -3.57 16 5 C 0.15 5.66 2.23 44.17 0.10 5.76 16 6 H 0.08 3.07 7.00 -2.39 -0.02 3.06 16 7 N -0.83 -28.10 8.54 -171.81 -1.47 -29.57 16 8 C 0.05 2.36 4.35 29.85 0.13 2.49 16 9 C -0.50 -27.61 8.84 25.60 0.23 -27.38 16 10 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 11 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 12 N -0.94 -56.20 13.29 21.45 0.28 -55.91 16 13 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 14 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 15 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 C -0.09 -3.00 5.89 -19.78 -0.12 -3.12 16 18 C -0.11 -3.41 8.99 71.24 0.64 -2.77 16 19 C 0.07 2.22 6.68 22.53 0.15 2.37 16 20 O -0.49 -12.98 12.42 -93.04 -1.16 -14.14 16 21 C 0.05 1.34 7.25 22.45 0.16 1.51 16 22 F -0.14 -4.03 16.32 44.97 0.73 -3.30 16 23 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.07 1.39 7.64 -2.39 -0.02 1.37 16 25 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 26 H 0.15 3.69 6.28 -2.91 -0.02 3.67 16 27 H 0.34 10.85 7.20 -89.69 -0.65 10.21 16 28 H 0.34 9.44 9.06 -89.70 -0.81 8.62 16 29 H 0.00 0.01 7.00 -2.39 -0.02 -0.01 16 30 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.08 2.11 7.54 -2.39 -0.02 2.10 16 34 H 0.06 2.33 5.46 -2.38 -0.01 2.32 16 35 H 0.41 7.16 9.06 -74.05 -0.67 6.48 16 Total: -1.00 -65.96 295.61 1.88 -64.09 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.98 Total: 24.27 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 2.44 Total: -31.81 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -1.18 Total: -85.48 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -1.16 Total: -14.14 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.73 Total: -3.30 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.96 1.88 -64.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260189863.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.150 kcal (2) G-P(sol) polarization free energy of solvation -65.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds