Wall clock time and date at job start Mon Mar 30 2020 06:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35897 * 117.00194 * 2 1 4 4 C 1.38705 * 120.04173 * 0.23252 * 3 2 1 5 5 C 1.38344 * 119.91883 * 180.25461 * 4 3 2 6 6 F 1.35099 * 120.00023 * 179.74698 * 5 4 3 7 7 C 1.38516 * 120.00424 * 359.76733 * 5 4 3 8 8 C 1.50701 * 119.95693 * 179.97438 * 7 5 4 9 9 C 1.38212 * 120.08539 * 359.97438 * 7 5 4 10 10 C 1.38176 * 120.07708 * 0.02637 * 9 7 5 11 11 C 1.50706 * 119.99790 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46628 * 219.99942 * 11 10 9 13 13 N 1.46899 * 109.47157 * 339.99784 * 11 10 9 14 14 C 1.53004 * 109.47045 * 100.00011 * 11 10 9 15 15 C 1.50700 * 109.47260 * 174.99646 * 14 11 10 16 16 H 1.08002 * 119.99558 * 0.02562 * 15 14 11 17 17 C 1.37873 * 120.00103 * 179.97438 * 15 14 11 18 18 N 1.31513 * 120.00050 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99991 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.47023 * 89.99712 * 19 17 15 21 21 H 1.48490 * 109.47078 * 209.99470 * 19 17 15 22 22 H 1.48499 * 109.47215 * 329.99704 * 19 17 15 23 23 H 1.09004 * 109.47475 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47134 * 299.99577 * 1 2 3 25 25 H 1.09002 * 109.47251 * 59.99857 * 1 2 3 26 26 H 1.08001 * 120.04677 * 359.97438 * 4 3 2 27 27 H 1.09006 * 109.46800 * 270.01409 * 8 7 5 28 28 H 1.08994 * 109.47576 * 30.01877 * 8 7 5 29 29 H 1.08996 * 109.47139 * 150.02523 * 8 7 5 30 30 H 1.08002 * 119.95833 * 179.97438 * 9 7 5 31 31 H 1.00897 * 111.00114 * 296.04373 * 13 11 10 32 32 H 1.00901 * 111.00061 * 60.00560 * 13 11 10 33 33 H 1.09001 * 109.46815 * 295.00119 * 14 11 10 34 34 H 1.09001 * 109.47178 * 54.99385 * 14 11 10 35 35 H 0.96996 * 119.99995 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3747 0.0049 5 6 1.9221 3.6060 -0.0005 6 9 1.1888 4.7406 -0.0009 7 6 3.3055 3.6756 -0.0058 8 6 3.9915 5.0174 -0.0122 9 6 4.0576 2.5160 -0.0053 10 6 3.4312 1.2844 0.0001 11 6 4.2530 0.0211 0.0001 12 1 3.7887 -0.7143 -0.6570 13 7 5.6092 0.3191 -0.4795 14 6 4.3264 -0.5396 1.4218 15 6 5.0428 -1.8653 1.4026 16 1 5.4094 -2.2675 0.4698 17 6 5.2310 -2.5642 2.5761 18 7 5.8557 -3.7214 2.5593 19 14 4.5975 -1.8681 4.1897 20 1 3.2089 -2.3410 4.4215 21 1 5.4683 -2.3256 5.3020 22 1 4.6114 -0.3845 4.1282 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 0.2128 2.3199 0.0083 27 1 4.1528 5.3380 -1.0415 28 1 3.3666 5.7474 0.5021 29 1 4.9514 4.9372 0.4979 30 1 5.1361 2.5726 -0.0098 31 1 5.5932 0.6301 -1.4392 32 1 6.0611 0.9990 0.1135 33 1 4.8695 0.1578 2.0597 34 1 3.3175 -0.6773 1.8106 35 1 5.9878 -4.2132 3.3848 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260217066.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:15 Heat of formation + Delta-G solvation = -62.814685 kcal Electronic energy + Delta-G solvation = -18803.828731 eV Core-core repulsion = 15716.478516 eV Total energy + Delta-G solvation = -3087.350215 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.91642 -40.24959 -37.66360 -35.50520 -32.37910 -32.02253 -29.81167 -28.95589 -27.73816 -26.00761 -24.47541 -22.14968 -21.35585 -19.58943 -18.42693 -17.12119 -16.70581 -15.93616 -15.65480 -15.35807 -15.19771 -15.00429 -14.50058 -14.18103 -13.89710 -13.44246 -13.33810 -12.88977 -12.47051 -12.34303 -12.18666 -11.94783 -11.49232 -11.38563 -11.20770 -10.92796 -10.71945 -10.33914 -10.02258 -9.65673 -9.05468 -8.72547 -8.40669 -8.02636 -7.86053 -5.88739 -3.82773 1.19325 1.31237 3.33135 3.37436 3.44750 3.48442 3.60223 4.24383 4.56452 4.66422 4.78819 4.92413 5.04196 5.14842 5.16860 5.33782 5.45442 5.49039 5.51443 5.55134 5.57098 5.85429 5.98078 6.02146 6.21516 6.31850 6.37596 6.74535 6.77896 7.18508 7.40162 7.42773 7.83473 7.97857 8.11698 8.73702 9.24080 9.74009 11.25218 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.006630 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.368602 B = 4222.210582 C = 4607.806456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.293 6.293 3 C 0.158 3.842 4 C -0.242 4.242 5 C 0.118 3.882 6 F -0.142 7.142 7 C -0.154 4.154 8 C -0.106 4.106 9 C -0.066 4.066 10 C -0.137 4.137 11 C 0.152 3.848 12 H 0.090 0.910 13 N -0.820 5.820 14 C 0.003 3.997 15 C -0.490 4.490 16 H 0.081 0.919 17 C 0.062 3.938 18 N -0.907 5.907 19 Si 0.872 3.128 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.269 1.269 23 H 0.103 0.897 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.137 0.863 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.136 0.864 31 H 0.326 0.674 32 H 0.333 0.667 33 H 0.012 0.988 34 H 0.018 0.982 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 15.314 -6.177 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.205 6.205 3 C 0.111 3.889 4 C -0.262 4.262 5 C 0.099 3.901 6 F -0.120 7.120 7 C -0.155 4.155 8 C -0.163 4.163 9 C -0.085 4.085 10 C -0.140 4.140 11 C 0.040 3.960 12 H 0.108 0.892 13 N -0.347 5.347 14 C -0.034 4.034 15 C -0.528 4.528 16 H 0.099 0.901 17 C -0.137 4.137 18 N -0.548 5.548 19 Si 0.700 3.300 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.194 1.194 23 H 0.121 0.879 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.155 0.845 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.154 0.846 31 H 0.137 0.863 32 H 0.147 0.853 33 H 0.031 0.969 34 H 0.036 0.964 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.879 14.224 -5.915 17.780 hybrid contribution -1.245 1.645 0.923 2.260 sum -10.124 15.869 -4.991 19.474 Atomic orbital electron populations 1.23103 0.78765 1.04275 1.00930 1.86271 1.20909 1.25604 1.87760 1.18557 0.91621 0.83818 0.94939 1.21081 1.00788 0.91250 1.13083 1.17102 0.88593 0.81313 1.03107 1.91446 1.77333 1.49251 1.93989 1.19742 0.91526 0.97017 1.07233 1.20626 1.00431 0.92906 1.02330 1.20599 1.00015 0.89837 0.98019 1.20948 0.91773 0.98623 1.02635 1.20401 0.85432 0.89774 1.00357 0.89172 1.58749 1.18722 1.51929 1.05342 1.19577 0.96736 0.97130 0.89973 1.21032 1.34595 1.01380 0.95777 0.90140 1.24980 0.95319 0.94843 0.98569 1.69907 1.43417 1.14178 1.27277 0.86916 0.78855 0.79892 0.84374 1.20578 1.21577 1.19355 0.87856 0.92765 0.92887 0.84523 0.91292 0.91627 0.91081 0.84600 0.86277 0.85311 0.96932 0.96391 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.27 16 2 O -0.29 -4.81 9.65 -19.42 -0.19 -5.00 16 3 C 0.16 2.57 6.66 -39.23 -0.26 2.31 16 4 C -0.24 -3.46 9.01 -39.37 -0.35 -3.81 16 5 C 0.12 1.68 7.24 -39.44 -0.29 1.40 16 6 F -0.14 -1.95 16.47 2.25 0.04 -1.91 16 7 C -0.15 -2.10 5.89 -104.53 -0.62 -2.71 16 8 C -0.11 -1.12 9.83 36.01 0.35 -0.77 16 9 C -0.07 -0.96 8.90 -39.61 -0.35 -1.32 16 10 C -0.14 -2.32 5.09 -104.46 -0.53 -2.85 16 11 C 0.15 3.02 2.59 -68.86 -0.18 2.84 16 12 H 0.09 1.92 7.84 -51.93 -0.41 1.51 16 13 N -0.82 -14.66 8.42 -5.65 -0.05 -14.71 16 14 C 0.00 0.08 3.67 -27.88 -0.10 -0.02 16 15 C -0.49 -14.11 9.39 -34.44 -0.32 -14.43 16 16 H 0.08 2.53 7.99 -52.49 -0.42 2.11 16 17 C 0.06 1.85 5.47 -17.82 -0.10 1.76 16 18 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 19 Si 0.87 22.29 27.47 -169.99 -4.67 17.62 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.27 -6.65 6.54 56.52 0.37 -6.28 16 23 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 25 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 26 H 0.14 1.62 6.30 -52.49 -0.33 1.29 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.67 7.64 -51.93 -0.40 0.28 16 29 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.14 1.72 6.24 -52.49 -0.33 1.39 16 31 H 0.33 4.84 9.06 -39.29 -0.36 4.48 16 32 H 0.33 5.47 7.29 -39.29 -0.29 5.18 16 33 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 34 H 0.02 0.44 7.50 -51.93 -0.39 0.06 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 295.32 15.07 4.45 4.45 Total: -1.00 -32.76 295.32 -5.91 -38.67 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.51 Total: 5.01 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -1.76 Total: -16.34 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.73 Total: -42.50 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.19 Total: -5.00 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.76 -5.91 -38.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217066.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.143 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds