Wall clock time and date at job start Mon Mar 30 2020 06:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35897 * 117.00194 * 2 1 4 4 C 1.38705 * 120.04173 * 0.23252 * 3 2 1 5 5 C 1.38344 * 119.91883 * 180.25461 * 4 3 2 6 6 F 1.35099 * 120.00023 * 179.74698 * 5 4 3 7 7 C 1.38516 * 120.00424 * 359.76733 * 5 4 3 8 8 C 1.50701 * 119.95693 * 179.97438 * 7 5 4 9 9 C 1.38212 * 120.08539 * 359.97438 * 7 5 4 10 10 C 1.38176 * 120.07708 * 0.02637 * 9 7 5 11 11 C 1.50706 * 119.99790 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46628 * 219.99942 * 11 10 9 13 13 N 1.46899 * 109.47157 * 339.99784 * 11 10 9 14 14 C 1.53004 * 109.47045 * 100.00011 * 11 10 9 15 15 C 1.50700 * 109.47260 * 174.99646 * 14 11 10 16 16 H 1.08002 * 119.99558 * 0.02562 * 15 14 11 17 17 C 1.37873 * 120.00103 * 179.97438 * 15 14 11 18 18 N 1.31513 * 120.00050 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99991 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.47023 * 89.99712 * 19 17 15 21 21 H 1.48490 * 109.47078 * 209.99470 * 19 17 15 22 22 H 1.48499 * 109.47215 * 329.99704 * 19 17 15 23 23 H 1.09004 * 109.47475 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47134 * 299.99577 * 1 2 3 25 25 H 1.09002 * 109.47251 * 59.99857 * 1 2 3 26 26 H 1.08001 * 120.04677 * 359.97438 * 4 3 2 27 27 H 1.09006 * 109.46800 * 270.01409 * 8 7 5 28 28 H 1.08994 * 109.47576 * 30.01877 * 8 7 5 29 29 H 1.08996 * 109.47139 * 150.02523 * 8 7 5 30 30 H 1.08002 * 119.95833 * 179.97438 * 9 7 5 31 31 H 1.00897 * 111.00114 * 296.04373 * 13 11 10 32 32 H 1.00901 * 111.00061 * 60.00560 * 13 11 10 33 33 H 1.09001 * 109.46815 * 295.00119 * 14 11 10 34 34 H 1.09001 * 109.47178 * 54.99385 * 14 11 10 35 35 H 0.96996 * 119.99995 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3747 0.0049 5 6 1.9221 3.6060 -0.0005 6 9 1.1888 4.7406 -0.0009 7 6 3.3055 3.6756 -0.0058 8 6 3.9915 5.0174 -0.0122 9 6 4.0576 2.5160 -0.0053 10 6 3.4312 1.2844 0.0001 11 6 4.2530 0.0211 0.0001 12 1 3.7887 -0.7143 -0.6570 13 7 5.6092 0.3191 -0.4795 14 6 4.3264 -0.5396 1.4218 15 6 5.0428 -1.8653 1.4026 16 1 5.4094 -2.2675 0.4698 17 6 5.2310 -2.5642 2.5761 18 7 5.8557 -3.7214 2.5593 19 14 4.5975 -1.8681 4.1897 20 1 3.2089 -2.3410 4.4215 21 1 5.4683 -2.3256 5.3020 22 1 4.6114 -0.3845 4.1282 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 0.2128 2.3199 0.0083 27 1 4.1528 5.3380 -1.0415 28 1 3.3666 5.7474 0.5021 29 1 4.9514 4.9372 0.4979 30 1 5.1361 2.5726 -0.0098 31 1 5.5932 0.6301 -1.4392 32 1 6.0611 0.9990 0.1135 33 1 4.8695 0.1578 2.0597 34 1 3.3175 -0.6773 1.8106 35 1 5.9878 -4.2132 3.3848 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260217066.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:14 Heat of formation + Delta-G solvation = -85.453765 kcal Electronic energy + Delta-G solvation = -18804.810435 eV Core-core repulsion = 15716.478516 eV Total energy + Delta-G solvation = -3088.331919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.99418 -41.40102 -38.80899 -36.99337 -34.52408 -33.05848 -31.06364 -30.82536 -28.71869 -27.03334 -26.10632 -23.62203 -22.63223 -21.11195 -19.53340 -18.85747 -18.22314 -17.09437 -16.85980 -16.66122 -16.41625 -16.30302 -15.93541 -15.58063 -15.25709 -14.88207 -14.45348 -14.27628 -14.03746 -13.50854 -13.36912 -13.17593 -13.07162 -12.73340 -12.43407 -12.31913 -12.19115 -11.90622 -11.67963 -11.58179 -11.25468 -10.68821 -9.88452 -9.43795 -9.02966 -8.17947 -6.17045 0.04307 0.21074 1.35512 1.36914 1.48247 2.30976 2.40996 2.46390 3.15197 3.15901 3.62241 3.74052 3.80066 3.89192 4.12245 4.30303 4.35291 4.42472 4.54129 4.57398 4.70325 4.76547 4.79109 4.87678 5.00327 5.09207 5.20754 5.22125 5.32208 5.59907 5.69917 5.75013 6.32743 6.40332 6.54067 6.83258 6.91363 7.43482 8.99419 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.006630 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.368602 B = 4222.210582 C = 4607.806456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.144 3.856 4 C -0.239 4.239 5 C 0.115 3.885 6 F -0.137 7.137 7 C -0.153 4.153 8 C -0.106 4.106 9 C -0.062 4.062 10 C -0.160 4.160 11 C 0.166 3.834 12 H 0.065 0.935 13 N -0.833 5.833 14 C 0.011 3.989 15 C -0.492 4.492 16 H 0.038 0.962 17 C 0.000 4.000 18 N -0.955 5.955 19 Si 0.941 3.059 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.253 1.253 23 H 0.114 0.886 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.159 0.841 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.153 0.847 31 H 0.344 0.656 32 H 0.343 0.657 33 H 0.014 0.986 34 H 0.013 0.987 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.197 17.986 -5.653 21.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.098 3.902 4 C -0.258 4.258 5 C 0.095 3.905 6 F -0.116 7.116 7 C -0.154 4.154 8 C -0.163 4.163 9 C -0.080 4.080 10 C -0.163 4.163 11 C 0.054 3.946 12 H 0.083 0.917 13 N -0.363 5.363 14 C -0.027 4.027 15 C -0.530 4.530 16 H 0.057 0.943 17 C -0.195 4.195 18 N -0.598 5.598 19 Si 0.766 3.234 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.177 1.177 23 H 0.132 0.868 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.176 0.824 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.171 0.829 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.032 0.968 34 H 0.031 0.969 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.926 16.923 -5.413 20.352 hybrid contribution -0.946 0.815 0.652 1.409 sum -10.872 17.738 -4.761 21.342 Atomic orbital electron populations 1.23401 0.76494 1.05621 1.02434 1.86227 1.23481 1.26219 1.87944 1.18690 0.91655 0.84451 0.95445 1.21240 1.01872 0.90545 1.12189 1.17276 0.89059 0.81426 1.02707 1.91460 1.77277 1.48961 1.93896 1.20057 0.91442 0.98047 1.05836 1.20715 1.00833 0.91100 1.03604 1.20760 1.00922 0.89184 0.97106 1.20685 0.92055 0.97955 1.05593 1.19862 0.86759 0.90920 0.97074 0.91709 1.58622 1.18058 1.52868 1.06784 1.19429 0.95394 0.94758 0.93105 1.21268 1.34248 1.03337 0.94159 0.94338 1.25886 0.95697 0.95144 1.02746 1.70068 1.45307 1.15912 1.28472 0.85799 0.78412 0.79922 0.79294 1.19680 1.21090 1.17652 0.86772 0.91646 0.90878 0.82352 0.89752 0.91210 0.89721 0.82946 0.84264 0.84234 0.96785 0.96886 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -10.55 9.65 -92.39 -0.89 -11.44 16 3 C 0.14 4.54 6.66 22.50 0.15 4.69 16 4 C -0.24 -6.27 9.01 22.41 0.20 -6.07 16 5 C 0.11 2.95 7.24 22.36 0.16 3.11 16 6 F -0.14 -3.36 16.47 44.97 0.74 -2.62 16 7 C -0.15 -3.71 5.89 -19.80 -0.12 -3.83 16 8 C -0.11 -1.87 9.83 71.24 0.70 -1.17 16 9 C -0.06 -1.65 8.90 22.25 0.20 -1.45 16 10 C -0.16 -5.26 5.09 -19.76 -0.10 -5.37 16 11 C 0.17 6.63 2.59 44.17 0.11 6.75 16 12 H 0.06 2.87 7.84 -2.39 -0.02 2.85 16 13 N -0.83 -29.63 8.42 -171.79 -1.45 -31.08 16 14 C 0.01 0.52 3.67 29.85 0.11 0.63 16 15 C -0.49 -29.11 9.39 25.60 0.24 -28.87 16 16 H 0.04 2.54 7.99 -2.91 -0.02 2.51 16 17 C 0.00 0.03 5.47 84.65 0.46 0.49 16 18 N -0.96 -61.70 13.96 21.45 0.30 -61.40 16 19 Si 0.94 46.05 27.47 68.60 1.88 47.93 16 20 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 22 H -0.25 -11.61 6.54 99.48 0.65 -10.95 16 23 H 0.11 2.08 8.14 -2.38 -0.02 2.07 16 24 H 0.06 1.21 7.65 -2.38 -0.02 1.19 16 25 H 0.07 1.22 7.67 -2.39 -0.02 1.20 16 26 H 0.16 3.31 6.30 -2.91 -0.02 3.29 16 27 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.07 1.19 7.64 -2.39 -0.02 1.17 16 29 H 0.08 1.27 8.08 -2.39 -0.02 1.26 16 30 H 0.15 3.46 6.24 -2.91 -0.02 3.44 16 31 H 0.34 10.01 9.06 -89.70 -0.81 9.20 16 32 H 0.34 10.89 7.29 -89.69 -0.65 10.23 16 33 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 34 H 0.01 0.64 7.50 -2.39 -0.02 0.62 16 35 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -71.72 295.32 3.42 -68.30 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -0.40 Total: 19.96 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 3.23 Total: -29.65 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -1.15 Total: -92.48 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.89 Total: -11.44 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.74 Total: -2.62 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.88 Total: 47.93 kcal Total: -71.72 3.42 -68.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217066.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.152 kcal (2) G-P(sol) polarization free energy of solvation -71.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds