Wall clock time and date at job start Mon Mar 30 2020 07:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00045 * 2 1 4 4 C 1.38707 * 120.04163 * 359.97438 * 3 2 1 5 5 C 1.38345 * 119.92235 * 180.02562 * 4 3 2 6 6 F 1.35097 * 119.99778 * 179.97438 * 5 4 3 7 7 C 1.38515 * 120.00178 * 359.97438 * 5 4 3 8 8 C 1.50699 * 119.95716 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.46963 * 324.99654 * 8 7 5 10 10 N 1.46905 * 109.47256 * 205.00210 * 8 7 5 11 11 C 1.52997 * 109.47337 * 84.99962 * 8 7 5 12 12 C 1.50701 * 109.47212 * 184.99952 * 11 8 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 8 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 C 1.38205 * 120.08550 * 0.29656 * 7 5 4 21 21 C 1.38180 * 120.07970 * 359.44904 * 20 7 5 22 22 C 1.50699 * 120.00083 * 180.25271 * 21 20 7 23 23 H 1.09000 * 109.47441 * 300.00227 * 1 2 3 24 24 H 1.09003 * 109.47460 * 60.00301 * 1 2 3 25 25 H 1.09008 * 109.47099 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.04258 * 359.97438 * 4 3 2 27 27 H 1.00898 * 110.99705 * 300.00162 * 10 8 7 28 28 H 1.00897 * 110.99904 * 63.95071 * 10 8 7 29 29 H 1.09002 * 109.47153 * 64.99954 * 11 8 7 30 30 H 1.09001 * 109.46832 * 305.00144 * 11 8 7 31 31 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 32 32 H 1.08005 * 119.95947 * 179.70238 * 20 7 5 33 33 H 1.09004 * 109.47460 * 270.27310 * 22 21 20 34 34 H 1.08997 * 109.47318 * 30.27632 * 22 21 20 35 35 H 1.08999 * 109.46843 * 150.27744 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3747 -0.0005 5 6 1.9220 3.6061 -0.0011 6 9 1.1885 4.7406 -0.0021 7 6 3.3054 3.6757 -0.0005 8 6 3.9913 5.0175 -0.0005 9 1 3.4074 5.7241 -0.5904 10 7 5.3321 4.8821 -0.5854 11 6 4.1109 5.5292 1.4364 12 6 4.6846 6.9227 1.4273 13 1 4.9381 7.3963 0.4903 14 6 4.8848 7.5936 2.6151 15 7 4.5757 7.0171 3.7560 16 14 5.5952 9.3212 2.6038 17 1 5.8555 9.7402 1.2031 18 1 4.6275 10.2584 3.2287 19 1 6.8668 9.3385 3.3706 20 6 4.0575 2.5162 -0.0057 21 6 3.4312 1.2845 0.0002 22 6 4.2530 0.0213 0.0003 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.2127 2.3198 -0.0014 27 1 5.8934 4.2318 -0.0561 28 1 5.2777 4.6073 -1.5546 29 1 4.7678 4.8696 2.0034 30 1 3.1244 5.5454 1.8996 31 1 4.7169 7.4889 4.5917 32 1 5.1360 2.5729 -0.0101 33 1 4.4512 -0.2834 -1.0273 34 1 5.1971 0.2021 0.5142 35 1 3.7051 -0.7685 0.5142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260224023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:28 Heat of formation + Delta-G solvation = -90.000154 kcal Electronic energy + Delta-G solvation = -18610.280099 eV Core-core repulsion = 15521.751034 eV Total energy + Delta-G solvation = -3088.529065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -49.95538 -41.31066 -39.09950 -36.62946 -34.54419 -33.44395 -30.70644 -30.33408 -28.51992 -27.54236 -25.98840 -23.76367 -22.81382 -21.10696 -19.48072 -18.54551 -18.21643 -17.08367 -16.90867 -16.62858 -16.36465 -16.26183 -16.18204 -15.62687 -15.22088 -14.53012 -14.40341 -14.30763 -14.09380 -13.38975 -13.15702 -13.00496 -12.87267 -12.74451 -12.57387 -12.38252 -12.30474 -12.09319 -11.97356 -11.32065 -11.21257 -10.53766 -9.87175 -9.50605 -9.03008 -8.13183 -6.20154 0.05970 0.20372 1.41904 1.41998 1.56495 2.23657 2.43332 2.49081 3.19611 3.24632 3.62214 3.76191 3.79226 3.90814 4.10217 4.32675 4.36163 4.46955 4.49793 4.64451 4.71082 4.83198 4.87119 4.91242 4.94201 5.23461 5.27527 5.36123 5.43228 5.62640 5.68694 5.84959 6.26436 6.28406 6.45540 6.80696 6.93642 7.46581 8.99120 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.032215 B = 0.005281 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.943277 B = 5300.943041 C = 5608.346078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.314 6.314 3 C 0.142 3.858 4 C -0.238 4.238 5 C 0.109 3.891 6 F -0.148 7.148 7 C -0.183 4.183 8 C 0.154 3.846 9 H 0.063 0.937 10 N -0.824 5.824 11 C 0.048 3.952 12 C -0.507 4.507 13 H 0.061 0.939 14 C -0.006 4.006 15 N -0.940 5.940 16 Si 0.964 3.036 17 H -0.264 1.264 18 H -0.282 1.282 19 H -0.279 1.279 20 C -0.062 4.062 21 C -0.125 4.125 22 C -0.098 4.098 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.129 0.871 26 H 0.158 0.842 27 H 0.342 0.658 28 H 0.344 0.656 29 H -0.005 1.005 30 H -0.017 1.017 31 H 0.260 0.740 32 H 0.151 0.849 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 -16.338 -9.697 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.228 6.228 3 C 0.096 3.904 4 C -0.257 4.257 5 C 0.089 3.911 6 F -0.127 7.127 7 C -0.187 4.187 8 C 0.041 3.959 9 H 0.081 0.919 10 N -0.354 5.354 11 C 0.010 3.990 12 C -0.545 4.545 13 H 0.079 0.921 14 C -0.202 4.202 15 N -0.582 5.582 16 Si 0.789 3.211 17 H -0.188 1.188 18 H -0.208 1.208 19 H -0.204 1.204 20 C -0.081 4.081 21 C -0.126 4.126 22 C -0.155 4.155 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.147 0.853 26 H 0.175 0.825 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.013 0.987 30 H 0.002 0.998 31 H 0.069 0.931 32 H 0.168 0.832 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.281 -15.675 -9.375 19.012 hybrid contribution -0.652 0.557 0.380 0.938 sum -5.933 -15.118 -8.995 18.565 Atomic orbital electron populations 1.23411 0.76472 1.06001 1.02120 1.86063 1.23307 1.25090 1.88292 1.18533 0.91762 0.84006 0.96105 1.21248 1.01913 0.90426 1.12161 1.17537 0.89065 0.81955 1.02544 1.91457 1.77259 1.50107 1.93831 1.21177 0.92740 0.99216 1.05530 1.20112 0.88830 0.89819 0.97116 0.91922 1.58652 1.12575 1.57824 1.06374 1.18901 0.94329 0.95450 0.90275 1.21516 1.40047 1.00335 0.92647 0.92073 1.25932 0.96524 1.02473 0.95273 1.70117 1.50558 1.39472 0.98033 0.85410 0.77895 0.79409 0.78366 1.18797 1.20800 1.20433 1.20748 1.00648 0.89436 0.97219 1.19599 0.90974 0.96902 1.05097 1.20636 0.98792 0.92631 1.03399 0.92334 0.91722 0.85315 0.82490 0.84293 0.84286 0.98694 0.99827 0.93106 0.83157 0.89795 0.90435 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 16 2 O -0.31 -6.96 9.54 -92.42 -0.88 -7.84 16 3 C 0.14 3.84 6.66 22.50 0.15 3.99 16 4 C -0.24 -7.02 9.01 22.41 0.20 -6.81 16 5 C 0.11 4.00 7.24 22.36 0.16 4.16 16 6 F -0.15 -6.02 16.56 44.97 0.74 -5.27 16 7 C -0.18 -6.79 5.06 -19.81 -0.10 -6.89 16 8 C 0.15 6.61 2.70 44.17 0.12 6.73 16 9 H 0.06 2.88 7.79 -2.39 -0.02 2.86 16 10 N -0.82 -30.13 8.54 -171.79 -1.47 -31.60 16 11 C 0.05 2.62 4.60 29.85 0.14 2.76 16 12 C -0.51 -29.92 8.84 25.60 0.23 -29.69 16 13 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 14 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 15 N -0.94 -59.15 13.29 21.45 0.28 -58.86 16 16 Si 0.96 46.40 29.54 68.60 2.03 48.42 16 17 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 C -0.06 -1.88 8.92 22.25 0.20 -1.68 16 21 C -0.12 -3.34 5.89 -19.76 -0.12 -3.45 16 22 C -0.10 -1.92 9.79 71.24 0.70 -1.22 16 23 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 24 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 25 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.16 3.77 6.30 -2.91 -0.02 3.75 16 27 H 0.34 11.55 7.21 -89.70 -0.65 10.91 16 28 H 0.34 10.19 9.06 -89.70 -0.81 9.38 16 29 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 31 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.15 3.93 6.28 -2.91 -0.02 3.91 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 35 H 0.07 1.39 7.53 -2.39 -0.02 1.38 16 Total: -1.00 -71.42 298.96 3.62 -67.80 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.34 Total: 18.04 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 3.25 Total: -30.69 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -1.18 Total: -90.46 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.88 Total: -7.84 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.74 Total: -5.27 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -71.42 3.62 -67.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260224023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.197 kcal (2) G-P(sol) polarization free energy of solvation -71.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds