Wall clock time and date at job start Mon Mar 30 2020 06:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35949 * 116.99916 * 2 1 4 4 C 1.38658 * 120.06406 * 90.00398 * 3 2 1 5 5 C 1.50699 * 120.01626 * 359.97438 * 4 3 2 6 6 C 1.38187 * 119.97081 * 180.02562 * 4 3 2 7 7 C 1.50698 * 119.95037 * 179.97438 * 6 4 3 8 8 H 1.08991 * 109.47374 * 325.01705 * 7 6 4 9 9 N 1.46901 * 109.46600 * 205.01872 * 7 6 4 10 10 C 1.50700 * 109.47249 * 85.02372 * 7 6 4 11 11 H 1.08008 * 120.00051 * 359.97438 * 10 7 6 12 12 C 1.37873 * 120.00275 * 179.97438 * 10 7 6 13 13 N 1.31523 * 119.99731 * 359.97438 * 12 10 7 14 14 Si 1.86793 * 120.00395 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47548 * 89.99858 * 14 12 10 16 16 H 1.48497 * 109.47318 * 210.00200 * 14 12 10 17 17 H 1.48506 * 109.47094 * 330.00043 * 14 12 10 18 18 C 1.38261 * 120.09487 * 359.97438 * 6 4 3 19 19 C 1.38262 * 120.12404 * 359.97438 * 18 6 4 20 20 C 1.50703 * 119.98320 * 180.02562 * 19 18 6 21 21 C 1.38329 * 120.03260 * 0.28039 * 19 18 6 22 22 F 1.35095 * 120.05031 * 179.72400 * 21 19 18 23 23 H 1.08997 * 109.46915 * 59.99874 * 1 2 3 24 24 H 1.09001 * 109.47474 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46869 * 300.00031 * 1 2 3 26 26 H 1.09000 * 109.47294 * 270.02550 * 5 4 3 27 27 H 1.09001 * 109.47416 * 30.02144 * 5 4 3 28 28 H 1.08998 * 109.47149 * 150.02704 * 5 4 3 29 29 H 1.00905 * 110.99792 * 176.04675 * 9 7 6 30 30 H 1.00901 * 111.00122 * 299.99606 * 9 7 6 31 31 H 0.96998 * 119.99665 * 180.02562 * 13 12 10 32 32 H 1.08000 * 119.94195 * 179.97438 * 18 6 4 33 33 H 1.09002 * 109.47152 * 90.00288 * 20 19 18 34 34 H 1.09001 * 109.46980 * 330.00388 * 20 19 18 35 35 H 1.09004 * 109.47113 * 210.00369 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 2.3616 1.8302 1.2000 5 6 2.0200 1.1607 2.5062 6 6 2.9885 3.0617 1.1978 7 6 3.3306 3.7342 2.5023 8 1 2.5574 3.5141 3.2382 9 7 3.4126 5.1866 2.2976 10 6 4.6576 3.2212 2.9991 11 1 5.1990 2.4818 2.4275 12 6 5.1807 3.6958 4.1832 13 7 4.5217 4.5966 4.8789 14 14 6.8253 3.0594 4.7994 15 1 7.9177 3.9108 4.2638 16 1 6.8476 3.1011 6.2836 17 1 7.0180 1.6602 4.3405 18 6 3.3023 3.6777 0.0004 19 6 2.9905 3.0637 -1.1985 20 6 3.3345 3.7377 -2.5017 21 6 2.3583 1.8333 -1.2023 22 9 2.0485 1.2356 -2.3735 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.0219 1.4658 2.8207 27 1 2.0453 0.0786 2.3774 28 1 2.7454 1.4534 3.2652 29 1 3.5773 5.6659 3.1701 30 1 4.1231 5.4166 1.6190 31 1 4.8899 4.9307 5.7118 32 1 3.7918 4.6404 0.0016 33 1 4.3333 3.4340 -2.8153 34 1 3.3085 4.8194 -2.3693 35 1 2.6105 3.4474 -3.2631 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260225191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:03 Heat of formation + Delta-G solvation = -72.664268 kcal Electronic energy + Delta-G solvation = -19104.998389 eV Core-core repulsion = 16017.221064 eV Total energy + Delta-G solvation = -3087.777325 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.42753 -39.60612 -37.43944 -34.79147 -32.84795 -31.41659 -29.16412 -28.60434 -26.70717 -26.09438 -24.39360 -23.03768 -21.00884 -19.58969 -17.20507 -16.67940 -16.38206 -16.27909 -15.69107 -15.04824 -14.66414 -14.40796 -14.08146 -13.35284 -13.20244 -12.89907 -12.69795 -12.62931 -12.56932 -11.96810 -11.84562 -11.79631 -11.47297 -11.23754 -11.05011 -10.78153 -10.60202 -10.51568 -10.02118 -9.93823 -9.44310 -8.74039 -8.02538 -7.78648 -7.28073 -6.16729 -4.33745 1.59594 1.73113 3.18375 3.26510 3.31015 3.77881 4.18959 4.33304 4.69907 5.05210 5.12541 5.35121 5.42764 5.46074 5.59213 5.65498 5.69148 5.81373 5.89498 6.06550 6.15874 6.18773 6.28027 6.44706 6.61545 6.68396 6.87993 6.92290 7.07602 7.21489 7.63806 7.67728 7.84240 8.00436 8.58096 8.84468 9.01870 9.38407 10.80633 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.024122 B = 0.007003 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.465444 B = 3997.152578 C = 4500.698976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.329 6.329 3 C 0.055 3.945 4 C -0.079 4.079 5 C -0.114 4.114 6 C -0.022 4.022 7 C 0.242 3.758 8 H 0.055 0.945 9 N -0.852 5.852 10 C -0.543 4.543 11 H 0.057 0.943 12 C 0.068 3.932 13 N -0.892 5.892 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.086 4.086 19 C -0.121 4.121 20 C -0.106 4.106 21 C 0.052 3.948 22 F -0.145 7.145 23 H 0.042 0.958 24 H 0.090 0.910 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.357 0.643 30 H 0.311 0.689 31 H 0.266 0.734 32 H 0.134 0.866 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.203 -3.305 -8.393 10.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.245 6.245 3 C 0.011 3.989 4 C -0.080 4.080 5 C -0.170 4.170 6 C -0.023 4.023 7 C 0.132 3.868 8 H 0.073 0.927 9 N -0.382 5.382 10 C -0.582 4.582 11 H 0.075 0.925 12 C -0.135 4.135 13 N -0.531 5.531 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.104 4.104 19 C -0.122 4.122 20 C -0.163 4.163 21 C 0.032 3.968 22 F -0.123 7.123 23 H 0.060 0.940 24 H 0.108 0.892 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.174 0.826 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.152 0.848 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.907 -3.453 -8.499 10.911 hybrid contribution 1.719 -0.444 0.522 1.850 sum -4.189 -3.898 -7.977 9.816 Atomic orbital electron populations 1.22956 0.79737 1.02684 1.00571 1.86021 1.19459 1.24759 1.94292 1.18399 1.01825 0.87673 0.91046 1.19885 0.99463 0.94473 0.94183 1.20751 1.02092 0.99546 0.94601 1.20383 0.92243 0.92436 0.97266 1.18009 0.95894 0.85619 0.87319 0.92698 1.59573 1.52629 1.09523 1.16482 1.21752 1.04874 1.24852 1.06763 0.92468 1.25003 0.97651 0.94810 0.96007 1.69739 1.38301 1.29491 1.15575 0.86516 0.83626 0.79562 0.77917 1.20582 1.21049 1.19727 1.20806 0.99419 1.00175 0.90020 1.19770 1.01615 0.93819 0.97028 1.20637 1.01662 1.00376 0.93613 1.17703 1.05469 0.93238 0.80371 1.91386 1.91581 1.83423 1.45941 0.93970 0.89170 0.93415 0.92081 0.91931 0.88682 0.82618 0.87877 0.92355 0.84829 0.91309 0.91067 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 11.13 101.05 1.12 1.59 16 2 O -0.33 -5.81 9.33 -19.58 -0.18 -6.00 16 3 C 0.05 1.05 5.70 -39.18 -0.22 0.83 16 4 C -0.08 -1.58 5.89 -104.49 -0.62 -2.20 16 5 C -0.11 -2.10 8.99 36.01 0.32 -1.78 16 6 C -0.02 -0.47 4.99 -104.63 -0.52 -1.00 16 7 C 0.24 5.68 2.27 -70.02 -0.16 5.52 16 8 H 0.06 1.41 6.98 -51.93 -0.36 1.04 16 9 N -0.85 -19.18 8.79 -6.65 -0.06 -19.23 16 10 C -0.54 -13.87 7.94 -34.44 -0.27 -14.14 16 11 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 12 C 0.07 1.75 5.38 -17.82 -0.10 1.66 16 13 N -0.89 -23.49 11.54 55.43 0.64 -22.85 16 14 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 C -0.09 -1.64 8.92 -39.56 -0.35 -1.99 16 19 C -0.12 -2.13 5.88 -104.58 -0.62 -2.75 16 20 C -0.11 -1.47 9.84 36.01 0.35 -1.11 16 21 C 0.05 0.96 7.25 -39.30 -0.28 0.68 16 22 F -0.14 -2.60 16.32 2.25 0.04 -2.56 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.07 7.53 -51.93 -0.39 0.68 16 28 H 0.09 1.97 6.16 -51.93 -0.32 1.65 16 29 H 0.36 8.65 7.08 -39.29 -0.28 8.37 16 30 H 0.31 6.61 7.20 -39.29 -0.28 6.33 16 31 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.13 2.41 6.28 -52.49 -0.33 2.08 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.06 0.82 7.63 -51.93 -0.40 0.42 16 LS Contribution 294.70 15.07 4.44 4.44 Total: -1.00 -27.04 294.70 -5.92 -32.96 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -4.43 Total: 12.60 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -1.34 Total: -14.70 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.58 Total: -42.08 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.18 Total: -6.00 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.04 -5.92 -32.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260225191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.709 kcal (2) G-P(sol) polarization free energy of solvation -27.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds