Wall clock time and date at job start Mon Mar 30 2020 06:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35949 * 116.99916 * 2 1 4 4 C 1.38658 * 120.06406 * 90.00398 * 3 2 1 5 5 C 1.50699 * 120.01626 * 359.97438 * 4 3 2 6 6 C 1.38187 * 119.97081 * 180.02562 * 4 3 2 7 7 C 1.50698 * 119.95037 * 179.97438 * 6 4 3 8 8 H 1.08991 * 109.47374 * 325.01705 * 7 6 4 9 9 N 1.46901 * 109.46600 * 205.01872 * 7 6 4 10 10 C 1.50700 * 109.47249 * 85.02372 * 7 6 4 11 11 H 1.08008 * 120.00051 * 359.97438 * 10 7 6 12 12 C 1.37873 * 120.00275 * 179.97438 * 10 7 6 13 13 N 1.31523 * 119.99731 * 359.97438 * 12 10 7 14 14 Si 1.86793 * 120.00395 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47548 * 89.99858 * 14 12 10 16 16 H 1.48497 * 109.47318 * 210.00200 * 14 12 10 17 17 H 1.48506 * 109.47094 * 330.00043 * 14 12 10 18 18 C 1.38261 * 120.09487 * 359.97438 * 6 4 3 19 19 C 1.38262 * 120.12404 * 359.97438 * 18 6 4 20 20 C 1.50703 * 119.98320 * 180.02562 * 19 18 6 21 21 C 1.38329 * 120.03260 * 0.28039 * 19 18 6 22 22 F 1.35095 * 120.05031 * 179.72400 * 21 19 18 23 23 H 1.08997 * 109.46915 * 59.99874 * 1 2 3 24 24 H 1.09001 * 109.47474 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46869 * 300.00031 * 1 2 3 26 26 H 1.09000 * 109.47294 * 270.02550 * 5 4 3 27 27 H 1.09001 * 109.47416 * 30.02144 * 5 4 3 28 28 H 1.08998 * 109.47149 * 150.02704 * 5 4 3 29 29 H 1.00905 * 110.99792 * 176.04675 * 9 7 6 30 30 H 1.00901 * 111.00122 * 299.99606 * 9 7 6 31 31 H 0.96998 * 119.99665 * 180.02562 * 13 12 10 32 32 H 1.08000 * 119.94195 * 179.97438 * 18 6 4 33 33 H 1.09002 * 109.47152 * 90.00288 * 20 19 18 34 34 H 1.09001 * 109.46980 * 330.00388 * 20 19 18 35 35 H 1.09004 * 109.47113 * 210.00369 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 2.3616 1.8302 1.2000 5 6 2.0200 1.1607 2.5062 6 6 2.9885 3.0617 1.1978 7 6 3.3306 3.7342 2.5023 8 1 2.5574 3.5141 3.2382 9 7 3.4126 5.1866 2.2976 10 6 4.6576 3.2212 2.9991 11 1 5.1990 2.4818 2.4275 12 6 5.1807 3.6958 4.1832 13 7 4.5217 4.5966 4.8789 14 14 6.8253 3.0594 4.7994 15 1 7.9177 3.9108 4.2638 16 1 6.8476 3.1011 6.2836 17 1 7.0180 1.6602 4.3405 18 6 3.3023 3.6777 0.0004 19 6 2.9905 3.0637 -1.1985 20 6 3.3345 3.7377 -2.5017 21 6 2.3583 1.8333 -1.2023 22 9 2.0485 1.2356 -2.3735 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.0219 1.4658 2.8207 27 1 2.0453 0.0786 2.3774 28 1 2.7454 1.4534 3.2652 29 1 3.5773 5.6659 3.1701 30 1 4.1231 5.4166 1.6190 31 1 4.8899 4.9307 5.7118 32 1 3.7918 4.6404 0.0016 33 1 4.3333 3.4340 -2.8153 34 1 3.3085 4.8194 -2.3693 35 1 2.6105 3.4474 -3.2631 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260225191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:03 Heat of formation + Delta-G solvation = -88.719569 kcal Electronic energy + Delta-G solvation = -19105.694599 eV Core-core repulsion = 16017.221064 eV Total energy + Delta-G solvation = -3088.473535 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.85512 -41.05683 -38.85231 -36.50606 -34.38018 -33.24255 -30.56698 -30.05631 -28.04273 -27.82765 -25.80237 -24.72240 -22.48330 -21.17081 -18.62637 -18.60290 -17.82166 -17.74465 -17.07574 -16.81030 -16.13454 -15.96938 -15.43403 -14.92002 -14.78376 -14.28134 -14.10265 -14.06420 -13.99718 -13.48509 -13.38627 -13.06362 -12.97218 -12.83070 -12.75944 -12.57540 -12.22395 -11.96616 -11.73807 -11.58262 -10.91709 -10.69462 -9.46487 -9.37121 -9.11834 -8.11282 -6.36069 0.14258 0.24352 1.37209 1.41123 1.49795 2.33118 2.44638 2.81780 3.06299 3.26320 3.79071 3.96788 4.18109 4.25036 4.36790 4.40562 4.44870 4.65237 4.69893 4.71426 4.77645 4.81010 4.86326 4.98036 5.13248 5.17198 5.35168 5.40619 5.44110 5.66154 5.74811 5.93565 6.06557 6.48315 6.64733 6.93421 7.12778 7.39793 8.82605 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.024122 B = 0.007003 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.465444 B = 3997.152578 C = 4500.698976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.057 3.943 4 C -0.097 4.097 5 C -0.104 4.104 6 C -0.044 4.044 7 C 0.249 3.751 8 H 0.027 0.973 9 N -0.843 5.843 10 C -0.551 4.551 11 H 0.043 0.957 12 C 0.029 3.971 13 N -0.912 5.912 14 Si 0.951 3.049 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.276 1.276 18 C -0.093 4.093 19 C -0.113 4.113 20 C -0.105 4.105 21 C 0.043 3.957 22 F -0.140 7.140 23 H 0.046 0.954 24 H 0.121 0.879 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.348 0.652 30 H 0.319 0.681 31 H 0.268 0.732 32 H 0.142 0.858 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 -3.657 -9.692 11.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.261 6.261 3 C 0.012 3.988 4 C -0.098 4.098 5 C -0.161 4.161 6 C -0.045 4.045 7 C 0.139 3.861 8 H 0.045 0.955 9 N -0.373 5.373 10 C -0.590 4.590 11 H 0.061 0.939 12 C -0.172 4.172 13 N -0.551 5.551 14 Si 0.778 3.222 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.201 1.201 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.162 4.162 21 C 0.023 3.977 22 F -0.119 7.119 23 H 0.065 0.935 24 H 0.139 0.861 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.162 0.838 30 H 0.130 0.870 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.898 -3.807 -9.815 12.067 hybrid contribution 1.637 -0.387 0.870 1.894 sum -4.261 -4.194 -8.945 10.759 Atomic orbital electron populations 1.23240 0.77322 1.04940 1.01009 1.85978 1.21738 1.24016 1.94336 1.18442 1.01597 0.87869 0.90877 1.19998 1.00162 0.94551 0.95080 1.20640 1.01929 1.00073 0.93431 1.20267 0.94089 0.93298 0.96877 1.17759 0.94147 0.86061 0.88147 0.95547 1.59533 1.52813 1.08949 1.15974 1.21877 1.05731 1.24510 1.06916 0.93880 1.25608 1.00315 0.95053 0.96184 1.69820 1.39374 1.30135 1.15790 0.85658 0.80437 0.78720 0.77423 1.20071 1.20700 1.20129 1.20897 0.99727 1.00567 0.89935 1.20097 0.99884 0.93291 0.98102 1.20743 1.02587 1.01196 0.91643 1.17851 1.05710 0.93693 0.80408 1.91395 1.91548 1.83396 1.45530 0.93523 0.86086 0.92991 0.90785 0.90804 0.91437 0.83754 0.87016 0.92248 0.84036 0.89956 0.89294 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.13 113.37 1.26 1.96 16 2 O -0.34 -11.63 9.33 -92.97 -0.87 -12.50 16 3 C 0.06 2.11 5.70 22.53 0.13 2.24 16 4 C -0.10 -3.88 5.89 -19.78 -0.12 -4.00 16 5 C -0.10 -3.91 8.99 71.24 0.64 -3.27 16 6 C -0.04 -1.89 4.99 -19.87 -0.10 -1.99 16 7 C 0.25 11.95 2.27 43.42 0.10 12.05 16 8 H 0.03 1.41 6.98 -2.39 -0.02 1.39 16 9 N -0.84 -38.26 8.79 -174.96 -1.54 -39.80 16 10 C -0.55 -28.59 7.94 25.60 0.20 -28.38 16 11 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 12 C 0.03 1.51 5.38 84.65 0.46 1.96 16 13 N -0.91 -48.42 11.54 21.45 0.25 -48.17 16 14 Si 0.95 41.86 29.54 68.60 2.03 43.88 16 15 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 C -0.09 -3.47 8.92 22.28 0.20 -3.27 16 19 C -0.11 -3.76 5.88 -19.84 -0.12 -3.87 16 20 C -0.11 -2.59 9.84 71.24 0.70 -1.89 16 21 C 0.04 1.53 7.25 22.45 0.16 1.69 16 22 F -0.14 -4.72 16.32 44.97 0.73 -3.99 16 23 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.07 2.52 7.53 -2.39 -0.02 2.50 16 28 H 0.07 2.89 6.16 -2.39 -0.01 2.87 16 29 H 0.35 17.03 7.08 -89.69 -0.63 16.40 16 30 H 0.32 13.50 7.20 -89.69 -0.65 12.86 16 31 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 32 H 0.14 4.94 6.28 -2.91 -0.02 4.92 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 35 H 0.07 1.67 7.63 -2.38 -0.02 1.65 16 Total: -1.00 -57.04 294.70 3.97 -53.07 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -0.15 Total: 34.28 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 3.52 Total: -26.77 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -1.29 Total: -87.97 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.87 Total: -12.50 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.73 Total: -3.99 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -57.04 3.97 -53.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260225191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.645 kcal (2) G-P(sol) polarization free energy of solvation -57.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds