Wall clock time and date at job start Mon Mar 30 2020 06:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35946 * 117.00184 * 2 1 4 4 C 1.38734 * 120.02726 * 359.97438 * 3 2 1 5 5 C 1.38129 * 119.96569 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.97959 * 180.02562 * 5 4 3 7 7 C 1.38470 * 120.03062 * 0.02562 * 5 4 3 8 8 F 1.35106 * 119.97000 * 180.02562 * 7 5 4 9 9 C 1.38436 * 120.06489 * 359.97438 * 7 5 4 10 10 C 1.50691 * 119.98683 * 180.27879 * 9 7 5 11 11 H 1.09000 * 109.47341 * 359.73288 * 10 9 7 12 12 C 1.50705 * 109.47149 * 119.72512 * 10 9 7 13 13 H 1.07999 * 119.99654 * 0.02562 * 12 10 9 14 14 C 1.37875 * 120.00474 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99569 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00156 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47022 * 90.00502 * 16 14 12 18 18 H 1.48501 * 109.46913 * 209.99944 * 16 14 12 19 19 H 1.48500 * 109.47207 * 330.00331 * 16 14 12 20 20 C 1.52998 * 109.47599 * 239.72957 * 10 9 7 21 21 N 1.46893 * 109.47108 * 64.99693 * 20 10 9 22 22 C 1.38175 * 120.02504 * 0.02562 * 9 7 5 23 23 H 1.09002 * 109.47301 * 299.99907 * 1 2 3 24 24 H 1.09007 * 109.47366 * 59.99835 * 1 2 3 25 25 H 1.09003 * 109.47197 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.01362 * 0.03914 * 4 3 2 27 27 H 1.08999 * 109.46911 * 90.00880 * 6 5 4 28 28 H 1.09006 * 109.46906 * 209.99654 * 6 5 4 29 29 H 1.08996 * 109.47494 * 330.00351 * 6 5 4 30 30 H 0.97001 * 119.99898 * 180.02562 * 15 14 12 31 31 H 1.09003 * 109.47329 * 185.00458 * 20 10 9 32 32 H 1.09009 * 109.46678 * 305.00026 * 20 10 9 33 33 H 1.00899 * 110.99920 * 179.97438 * 21 20 10 34 34 H 1.00894 * 111.00735 * 303.95875 * 21 20 10 35 35 H 1.07998 * 120.01174 * 179.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9196 3.6052 -0.0011 6 6 1.0998 4.8697 -0.0011 7 6 3.3025 3.6769 -0.0016 8 9 3.9159 4.8807 -0.0016 9 6 4.0571 2.5163 -0.0011 10 6 5.5619 2.5964 0.0047 11 1 5.8702 3.6419 0.0031 12 6 6.0964 1.9171 1.2393 13 1 5.4145 1.4716 1.9485 14 6 7.4558 1.8634 1.4628 15 7 8.2861 2.4055 0.5989 16 14 8.1182 1.0208 2.9928 17 1 8.3606 -0.4150 2.7014 18 1 9.3926 1.6651 3.4001 19 1 7.1282 1.1425 4.0928 20 6 6.1145 1.8998 -1.2404 21 7 5.6910 2.6334 -2.4405 22 6 3.4310 1.2845 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2127 2.3195 -0.0003 27 1 0.9027 5.1749 1.0266 28 1 1.6488 5.6586 -0.5153 29 1 0.1552 4.6903 -0.5144 30 1 9.2426 2.3674 0.7560 31 1 7.2033 1.8795 -1.1923 32 1 5.7337 0.8794 -1.2850 33 1 6.0440 2.1930 -3.2768 34 1 4.6865 2.7220 -2.4745 35 1 4.0200 0.3792 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260269301.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:58 Heat of formation + Delta-G solvation = -69.890263 kcal Electronic energy + Delta-G solvation = -19051.659320 eV Core-core repulsion = 15964.002285 eV Total energy + Delta-G solvation = -3087.657035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.04487 -39.76823 -37.36977 -35.23762 -32.27351 -32.06860 -29.86519 -27.75386 -27.45710 -25.99202 -23.92353 -22.21119 -21.29318 -19.25740 -17.18159 -16.87903 -16.61109 -16.21042 -15.56823 -14.92123 -14.75267 -14.38432 -14.23405 -13.61713 -13.37586 -13.06337 -12.90205 -12.67284 -12.33943 -12.07714 -12.04760 -11.78993 -11.54679 -11.05159 -10.91198 -10.70890 -10.48502 -10.40130 -10.09543 -9.50718 -9.25587 -8.47662 -8.10429 -7.63426 -7.48490 -6.03981 -4.12475 1.70631 1.81457 3.29387 3.36355 3.40339 3.50852 4.10134 4.41719 4.86724 4.98542 5.15540 5.18507 5.23098 5.31555 5.36062 5.48959 5.73927 5.74912 5.80751 5.85058 6.09304 6.20348 6.38419 6.64461 6.66592 6.82587 6.86278 7.00071 7.30541 7.60821 7.71697 7.83273 7.90195 8.19246 8.35964 8.40248 8.91251 9.52124 11.01027 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.007583 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.579879 B = 3691.537577 C = 4172.958411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.111 3.889 4 C -0.207 4.207 5 C -0.092 4.092 6 C -0.109 4.109 7 C 0.058 3.942 8 F -0.136 7.136 9 C -0.025 4.025 10 C 0.080 3.920 11 H 0.055 0.945 12 C -0.513 4.513 13 H 0.060 0.940 14 C 0.064 3.936 15 N -0.883 5.883 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.069 3.931 21 N -0.852 5.852 22 C -0.124 4.124 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.094 0.906 26 H 0.125 0.875 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.263 0.737 31 H 0.110 0.890 32 H 0.001 0.999 33 H 0.322 0.678 34 H 0.320 0.680 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.150 -1.355 -2.803 14.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.066 3.934 4 C -0.226 4.226 5 C -0.093 4.093 6 C -0.165 4.165 7 C 0.039 3.961 8 F -0.115 7.115 9 C -0.026 4.026 10 C 0.061 3.939 11 H 0.073 0.927 12 C -0.551 4.551 13 H 0.078 0.922 14 C -0.138 4.138 15 N -0.520 5.520 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.061 4.061 21 N -0.379 5.379 22 C -0.143 4.143 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.113 0.887 26 H 0.143 0.857 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.019 0.981 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.416 -0.855 -2.513 13.676 hybrid contribution -0.300 -1.069 0.620 1.272 sum -13.716 -1.924 -1.893 13.979 Atomic orbital electron populations 1.22965 0.79292 1.03312 1.01022 1.86081 1.20628 1.27225 1.89251 1.19024 0.92359 0.83703 0.98293 1.20660 0.99214 0.91035 1.11662 1.19565 0.92158 0.95664 1.01883 1.20663 0.98869 0.94648 1.02350 1.17357 0.89458 0.81098 1.08220 1.91435 1.83256 1.42596 1.94222 1.20565 0.99559 0.89864 0.92607 1.17932 0.82747 0.99307 0.93932 0.92734 1.21047 0.91753 1.36829 1.05502 0.92167 1.24980 0.96925 0.95274 0.96647 1.69890 1.02930 1.44005 1.35217 0.86539 0.78446 0.79503 0.83263 1.20591 1.21101 1.19821 1.22114 1.03984 0.92024 0.87958 1.58946 1.15246 1.58494 1.05202 1.20224 0.90219 0.98761 1.05107 0.92968 0.93029 0.88738 0.85674 0.91199 0.91185 0.91694 0.92731 0.87253 0.98125 0.86792 0.86975 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.99 10.50 -19.57 -0.21 -5.20 16 3 C 0.11 1.94 6.69 -39.24 -0.26 1.68 16 4 C -0.21 -3.24 8.69 -39.44 -0.34 -3.58 16 5 C -0.09 -1.55 5.88 -104.58 -0.62 -2.17 16 6 C -0.11 -1.43 9.83 36.00 0.35 -1.08 16 7 C 0.06 1.19 7.18 -39.42 -0.28 0.91 16 8 F -0.14 -2.97 15.39 2.25 0.03 -2.94 16 9 C -0.02 -0.55 3.77 -104.58 -0.39 -0.94 16 10 C 0.08 2.02 2.14 -92.93 -0.20 1.82 16 11 H 0.05 1.57 7.12 -51.93 -0.37 1.20 16 12 C -0.51 -13.99 8.24 -34.44 -0.28 -14.28 16 13 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 14 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 15 N -0.88 -25.02 11.29 55.43 0.63 -24.39 16 16 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.07 1.64 5.98 -3.83 -0.02 1.62 16 21 N -0.85 -17.64 9.62 -10.37 -0.10 -17.74 16 22 C -0.12 -2.52 8.59 -39.44 -0.34 -2.86 16 23 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 24 H 0.05 0.47 7.66 -51.92 -0.40 0.08 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.13 1.54 6.30 -52.49 -0.33 1.21 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.94 7.64 -51.93 -0.40 0.54 16 29 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 32 H 0.00 0.01 7.22 -51.92 -0.37 -0.36 16 33 H 0.32 5.79 9.08 -39.29 -0.36 5.43 16 34 H 0.32 6.28 8.07 -39.29 -0.32 5.97 16 35 H 0.14 2.86 7.54 -52.49 -0.40 2.46 16 LS Contribution 294.27 15.07 4.43 4.43 Total: -1.00 -29.63 294.27 -6.17 -35.80 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.44 Total: 9.78 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -1.49 Total: -15.92 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.53 Total: -42.14 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.21 Total: -5.20 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.03 Total: -2.94 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.63 -6.17 -35.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269301.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.090 kcal (2) G-P(sol) polarization free energy of solvation -29.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds