Wall clock time and date at job start Mon Mar 30 2020 06:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35946 * 117.00184 * 2 1 4 4 C 1.38734 * 120.02726 * 359.97438 * 3 2 1 5 5 C 1.38129 * 119.96569 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.97959 * 180.02562 * 5 4 3 7 7 C 1.38470 * 120.03062 * 0.02562 * 5 4 3 8 8 F 1.35106 * 119.97000 * 180.02562 * 7 5 4 9 9 C 1.38436 * 120.06489 * 359.97438 * 7 5 4 10 10 C 1.50691 * 119.98683 * 180.27879 * 9 7 5 11 11 H 1.09000 * 109.47341 * 359.73288 * 10 9 7 12 12 C 1.50705 * 109.47149 * 119.72512 * 10 9 7 13 13 H 1.07999 * 119.99654 * 0.02562 * 12 10 9 14 14 C 1.37875 * 120.00474 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99569 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00156 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47022 * 90.00502 * 16 14 12 18 18 H 1.48501 * 109.46913 * 209.99944 * 16 14 12 19 19 H 1.48500 * 109.47207 * 330.00331 * 16 14 12 20 20 C 1.52998 * 109.47599 * 239.72957 * 10 9 7 21 21 N 1.46893 * 109.47108 * 64.99693 * 20 10 9 22 22 C 1.38175 * 120.02504 * 0.02562 * 9 7 5 23 23 H 1.09002 * 109.47301 * 299.99907 * 1 2 3 24 24 H 1.09007 * 109.47366 * 59.99835 * 1 2 3 25 25 H 1.09003 * 109.47197 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.01362 * 0.03914 * 4 3 2 27 27 H 1.08999 * 109.46911 * 90.00880 * 6 5 4 28 28 H 1.09006 * 109.46906 * 209.99654 * 6 5 4 29 29 H 1.08996 * 109.47494 * 330.00351 * 6 5 4 30 30 H 0.97001 * 119.99898 * 180.02562 * 15 14 12 31 31 H 1.09003 * 109.47329 * 185.00458 * 20 10 9 32 32 H 1.09009 * 109.46678 * 305.00026 * 20 10 9 33 33 H 1.00899 * 110.99920 * 179.97438 * 21 20 10 34 34 H 1.00894 * 111.00735 * 303.95875 * 21 20 10 35 35 H 1.07998 * 120.01174 * 179.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2912 2.3752 -0.0005 5 6 1.9196 3.6052 -0.0011 6 6 1.0998 4.8697 -0.0011 7 6 3.3025 3.6769 -0.0016 8 9 3.9159 4.8807 -0.0016 9 6 4.0571 2.5163 -0.0011 10 6 5.5619 2.5964 0.0047 11 1 5.8702 3.6419 0.0031 12 6 6.0964 1.9171 1.2393 13 1 5.4145 1.4716 1.9485 14 6 7.4558 1.8634 1.4628 15 7 8.2861 2.4055 0.5989 16 14 8.1182 1.0208 2.9928 17 1 8.3606 -0.4150 2.7014 18 1 9.3926 1.6651 3.4001 19 1 7.1282 1.1425 4.0928 20 6 6.1145 1.8998 -1.2404 21 7 5.6910 2.6334 -2.4405 22 6 3.4310 1.2845 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2127 2.3195 -0.0003 27 1 0.9027 5.1749 1.0266 28 1 1.6488 5.6586 -0.5153 29 1 0.1552 4.6903 -0.5144 30 1 9.2426 2.3674 0.7560 31 1 7.2033 1.8795 -1.1923 32 1 5.7337 0.8794 -1.2850 33 1 6.0440 2.1930 -3.2768 34 1 4.6865 2.7220 -2.4745 35 1 4.0200 0.3792 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260269301.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:57 Heat of formation + Delta-G solvation = -89.993812 kcal Electronic energy + Delta-G solvation = -19052.531075 eV Core-core repulsion = 15964.002285 eV Total energy + Delta-G solvation = -3088.528790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.64131 -41.08969 -38.78216 -36.92008 -34.24635 -33.57168 -31.37517 -29.23508 -28.71447 -27.19461 -25.93568 -23.85301 -22.63273 -20.96592 -18.61892 -18.51578 -18.09454 -17.89206 -16.84370 -16.69544 -16.33252 -16.11879 -15.50072 -15.28785 -15.01774 -14.50932 -14.17447 -13.96373 -13.84255 -13.74923 -13.14185 -13.07005 -12.95833 -12.88269 -12.62694 -12.39463 -12.31341 -11.99543 -11.61416 -11.23916 -11.15665 -10.57232 -9.60919 -9.39680 -8.92481 -8.13356 -6.29759 0.29075 0.35979 1.40145 1.40809 1.51687 2.38506 2.40129 2.67706 3.11911 3.51059 3.73729 3.93589 4.02373 4.14091 4.34107 4.42392 4.46814 4.58649 4.65903 4.77328 4.78004 4.81038 4.93239 4.98042 5.17691 5.24520 5.35095 5.38727 5.54607 5.77989 5.86559 5.94565 6.21019 6.48560 6.49749 6.70873 6.85221 7.38226 8.90709 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.007583 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.579879 B = 3691.537577 C = 4172.958411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.335 6.335 3 C 0.123 3.877 4 C -0.191 4.191 5 C -0.078 4.078 6 C -0.108 4.108 7 C 0.024 3.976 8 F -0.153 7.153 9 C -0.046 4.046 10 C 0.085 3.915 11 H 0.008 0.992 12 C -0.530 4.530 13 H 0.053 0.947 14 C 0.016 3.984 15 N -0.911 5.911 16 Si 0.958 3.042 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.271 1.271 20 C 0.083 3.917 21 N -0.851 5.851 22 C -0.145 4.145 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.119 0.881 26 H 0.172 0.828 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.264 0.736 31 H 0.078 0.922 32 H 0.002 0.998 33 H 0.339 0.661 34 H 0.329 0.671 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.312 -1.983 -2.557 17.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.249 6.249 3 C 0.077 3.923 4 C -0.209 4.209 5 C -0.079 4.079 6 C -0.165 4.165 7 C 0.005 3.995 8 F -0.132 7.132 9 C -0.047 4.047 10 C 0.066 3.934 11 H 0.026 0.974 12 C -0.568 4.568 13 H 0.071 0.929 14 C -0.183 4.183 15 N -0.549 5.549 16 Si 0.783 3.217 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.195 1.195 20 C -0.047 4.047 21 N -0.380 5.380 22 C -0.164 4.164 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.137 0.863 26 H 0.189 0.811 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.020 0.980 33 H 0.151 0.849 34 H 0.141 0.859 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.600 -1.492 -2.283 16.822 hybrid contribution 0.527 -0.915 0.506 1.171 sum -16.073 -2.407 -1.777 16.349 Atomic orbital electron populations 1.23410 0.76143 1.05691 1.02615 1.86077 1.23812 1.26269 1.88703 1.18972 0.91442 0.85255 0.96600 1.21095 1.01252 0.89439 1.09128 1.19996 0.90708 0.97986 0.99232 1.20788 0.99607 0.92404 1.03664 1.17662 0.91133 0.80044 1.10687 1.91381 1.83873 1.43345 1.94632 1.20210 0.97647 0.91483 0.95351 1.17632 0.85731 0.96143 0.93920 0.97356 1.21319 0.92120 1.36997 1.06361 0.92874 1.25765 0.97155 0.95863 0.99522 1.70030 1.03087 1.45004 1.36809 0.85552 0.77713 0.78770 0.79646 1.19606 1.20631 1.19539 1.21736 1.01826 0.92240 0.88934 1.58781 1.16054 1.58197 1.04942 1.20029 0.91944 0.97252 1.07201 0.91461 0.91109 0.86299 0.81084 0.89818 0.91835 0.88056 0.92687 0.90383 0.98023 0.84896 0.85944 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -9.58 10.50 -92.95 -0.98 -10.56 16 3 C 0.12 4.05 6.69 22.49 0.15 4.20 16 4 C -0.19 -5.23 8.69 22.36 0.19 -5.04 16 5 C -0.08 -2.46 5.88 -19.84 -0.12 -2.57 16 6 C -0.11 -2.46 9.83 71.24 0.70 -1.76 16 7 C 0.02 0.99 7.18 22.37 0.16 1.15 16 8 F -0.15 -6.94 15.39 44.97 0.69 -6.24 16 9 C -0.05 -2.09 3.77 -19.83 -0.07 -2.16 16 10 C 0.08 4.53 2.14 -12.29 -0.03 4.50 16 11 H 0.01 0.51 7.12 -2.39 -0.02 0.49 16 12 C -0.53 -30.23 8.24 25.60 0.21 -30.02 16 13 H 0.05 3.02 7.60 -2.91 -0.02 3.00 16 14 C 0.02 0.93 5.29 84.65 0.45 1.38 16 15 N -0.91 -53.76 11.29 21.45 0.24 -53.51 16 16 Si 0.96 44.47 29.54 68.60 2.03 46.49 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 C 0.08 4.17 5.98 86.30 0.52 4.68 16 21 N -0.85 -36.29 9.62 -186.72 -1.80 -38.08 16 22 C -0.15 -5.97 8.59 22.36 0.19 -5.78 16 23 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 24 H 0.07 0.92 7.66 -2.38 -0.02 0.90 16 25 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.17 3.11 6.30 -2.91 -0.02 3.10 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 1.55 7.64 -2.38 -0.02 1.54 16 29 H 0.10 1.59 8.08 -2.39 -0.02 1.57 16 30 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.08 4.41 5.95 -2.39 -0.01 4.40 16 32 H 0.00 0.08 7.22 -2.38 -0.02 0.06 16 33 H 0.34 12.34 9.08 -89.69 -0.81 11.52 16 34 H 0.33 13.19 8.07 -89.70 -0.72 12.46 16 35 H 0.12 5.15 7.54 -2.91 -0.02 5.13 16 Total: -1.00 -68.13 294.27 3.24 -64.89 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.41 Total: 27.07 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: 3.47 Total: -30.06 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -1.55 Total: -91.60 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.98 Total: -10.56 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.69 Total: -6.24 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.13 3.24 -64.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269301.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.105 kcal (2) G-P(sol) polarization free energy of solvation -68.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds