Wall clock time and date at job start Mon Mar 30 2020 07:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35943 * 116.99971 * 2 1 4 4 C 1.38726 * 120.03033 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.96872 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.98826 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47437 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47252 * 59.99610 * 6 5 4 9 9 H 1.07997 * 120.00301 * 269.02150 * 8 6 5 10 10 C 1.37878 * 119.99754 * 89.01737 * 8 6 5 11 11 N 1.31510 * 120.00186 * 6.74158 * 10 8 6 12 12 Si 1.86800 * 119.99906 * 186.74493 * 10 8 6 13 13 H 1.48497 * 109.47123 * 60.00062 * 12 10 8 14 14 H 1.48503 * 109.47435 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47175 * 299.99931 * 12 10 8 16 16 C 1.53005 * 109.46645 * 300.00001 * 6 5 4 17 17 N 1.46899 * 109.47027 * 185.34110 * 16 6 5 18 18 C 1.38480 * 120.02830 * 0.25339 * 5 4 3 19 19 F 1.35105 * 119.96593 * 179.72276 * 18 5 4 20 20 C 1.38428 * 120.05996 * 359.49434 * 18 5 4 21 21 C 1.38166 * 120.03400 * 0.50521 * 20 18 5 22 22 C 1.50699 * 120.02092 * 179.72649 * 21 20 18 23 23 H 1.08999 * 109.46971 * 300.00674 * 1 2 3 24 24 H 1.09003 * 109.46267 * 60.00092 * 1 2 3 25 25 H 1.08995 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.01944 * 0.02562 * 4 3 2 27 27 H 0.97002 * 120.00217 * 179.97438 * 11 10 8 28 28 H 1.08996 * 109.47393 * 305.33789 * 16 6 5 29 29 H 1.08998 * 109.46988 * 65.34313 * 16 6 5 30 30 H 1.00896 * 111.00485 * 56.04404 * 17 16 6 31 31 H 1.00903 * 111.00274 * 180.02562 * 17 16 6 32 32 H 1.08007 * 119.98811 * 180.25091 * 20 18 5 33 33 H 1.09000 * 109.47064 * 270.01982 * 22 21 20 34 34 H 1.08996 * 109.47155 * 30.02166 * 22 21 20 35 35 H 1.09000 * 109.47018 * 150.02294 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2913 2.3751 -0.0005 5 6 1.9197 3.6052 0.0000 6 6 1.1001 4.8698 -0.0012 7 1 1.7647 5.7336 -0.0010 8 6 0.2292 4.9051 1.2282 9 1 -0.7678 4.4913 1.1958 10 6 0.7054 5.4656 2.3944 11 7 1.8645 6.0868 2.4000 12 14 -0.2960 5.3427 3.9665 13 1 -0.5001 3.9132 4.3129 14 1 0.4300 6.0211 5.0702 15 1 -1.6142 5.9967 3.7663 16 6 0.2189 4.9051 -1.2515 17 7 -0.4841 6.1932 -1.3188 18 6 3.3027 3.6769 -0.0042 19 9 3.9160 4.8807 -0.0094 20 6 4.0572 2.5163 0.0016 21 6 3.4312 1.2845 0.0010 22 6 4.2529 0.0213 0.0011 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 0.2128 2.3195 -0.0005 27 1 2.1993 6.4815 3.2204 28 1 0.8412 4.7841 -2.1382 29 1 -0.5095 4.0956 -1.2056 30 1 0.1681 6.9627 -1.2972 31 1 -1.0735 6.2412 -2.1364 32 1 5.1357 2.5736 0.0024 33 1 4.4518 -0.2829 -1.0265 34 1 5.1967 0.2017 0.5157 35 1 3.7046 -0.7688 0.5142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260272178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:00 Heat of formation + Delta-G solvation = -69.223431 kcal Electronic energy + Delta-G solvation = -19184.453392 eV Core-core repulsion = 16096.825273 eV Total energy + Delta-G solvation = -3087.628119 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -47.73885 -39.64207 -37.00645 -35.22067 -32.41182 -31.96223 -29.19327 -28.62022 -27.11282 -25.38425 -24.03924 -21.94530 -21.09001 -19.73457 -17.08217 -16.79713 -16.15315 -15.89689 -15.40187 -14.83507 -14.51567 -14.37347 -14.00664 -13.68126 -13.41254 -13.05464 -12.79101 -12.60636 -12.19765 -12.14106 -11.67094 -11.43257 -11.40367 -11.31440 -10.89349 -10.75820 -10.57525 -10.26965 -9.95566 -9.45881 -9.11471 -8.41908 -8.02926 -7.73156 -7.20346 -5.97959 -3.98642 1.93574 2.04659 3.35325 3.39631 3.41881 3.69162 4.30824 4.48104 5.12644 5.23409 5.30622 5.37186 5.45856 5.51286 5.53911 5.70614 5.85847 5.94351 5.98744 6.04720 6.11674 6.19532 6.25377 6.50412 6.64133 6.78777 6.98608 7.08810 7.14425 7.47496 7.73383 7.90640 7.94463 8.03040 8.26509 8.37825 9.03029 9.61243 11.09908 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.008509 C = 0.008143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.050881 B = 3289.716394 C = 3437.879632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.103 3.897 4 C -0.170 4.170 5 C -0.023 4.023 6 C 0.062 3.938 7 H 0.072 0.928 8 C -0.483 4.483 9 H 0.057 0.943 10 C 0.065 3.935 11 N -0.881 5.881 12 Si 0.889 3.111 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.276 1.276 16 C 0.083 3.917 17 N -0.831 5.831 18 C 0.066 3.934 19 F -0.136 7.136 20 C -0.128 4.128 21 C -0.125 4.125 22 C -0.094 4.094 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.092 0.908 26 H 0.131 0.869 27 H 0.261 0.739 28 H -0.004 1.004 29 H 0.054 0.946 30 H 0.337 0.663 31 H 0.320 0.680 32 H 0.127 0.873 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -8.917 -6.462 11.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.059 3.941 4 C -0.188 4.188 5 C -0.025 4.025 6 C 0.043 3.957 7 H 0.090 0.910 8 C -0.521 4.521 9 H 0.075 0.925 10 C -0.138 4.138 11 N -0.518 5.518 12 Si 0.717 3.283 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.202 1.202 16 C -0.048 4.048 17 N -0.359 5.359 18 C 0.046 3.954 19 F -0.114 7.114 20 C -0.147 4.147 21 C -0.125 4.125 22 C -0.150 4.150 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.110 0.890 26 H 0.149 0.851 27 H 0.071 0.929 28 H 0.014 0.986 29 H 0.073 0.927 30 H 0.149 0.851 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.564 -9.176 -5.638 10.784 hybrid contribution -0.099 0.475 0.231 0.538 sum 0.465 -8.700 -5.406 10.254 Atomic orbital electron populations 1.22976 0.79050 1.02940 1.01722 1.85965 1.20810 1.27266 1.89463 1.18778 0.91579 0.84086 0.99684 1.20897 1.00071 0.90708 1.07164 1.20672 0.91848 0.97911 0.92087 1.18017 0.93745 0.90918 0.93025 0.90996 1.20675 0.99118 1.38383 0.93896 0.92502 1.24983 0.95107 0.94657 0.99032 1.69942 1.19155 1.35105 1.27575 0.86710 0.80351 0.78145 0.83128 1.20422 1.21433 1.20158 1.21804 0.95596 0.91157 0.96257 1.58472 1.27318 1.04376 1.45742 1.17475 0.90830 0.80293 1.06788 1.91455 1.82818 1.43047 1.94115 1.20664 0.99528 0.90592 1.03918 1.18693 0.90464 0.94951 1.08429 1.20473 0.98442 0.94646 1.01480 0.92466 0.92919 0.88990 0.85147 0.92909 0.98619 0.92742 0.85064 0.86968 0.85516 0.92126 0.92262 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.32 -5.29 9.54 -19.56 -0.19 -5.48 16 3 C 0.10 1.94 6.66 -39.23 -0.26 1.67 16 4 C -0.17 -3.46 7.85 -39.44 -0.31 -3.77 16 5 C -0.02 -0.53 4.78 -104.57 -0.50 -1.02 16 6 C 0.06 1.50 2.15 -92.92 -0.20 1.30 16 7 H 0.07 1.97 6.38 -51.93 -0.33 1.64 16 8 C -0.48 -12.91 7.67 -34.44 -0.26 -13.17 16 9 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 10 C 0.07 1.81 5.45 -17.82 -0.10 1.71 16 11 N -0.88 -25.53 12.85 55.43 0.71 -24.81 16 12 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.08 1.70 5.89 -3.82 -0.02 1.68 16 17 N -0.83 -16.01 9.35 -10.37 -0.10 -16.10 16 18 C 0.07 1.47 7.24 -39.42 -0.29 1.19 16 19 F -0.14 -3.25 16.19 2.25 0.04 -3.22 16 20 C -0.13 -2.44 9.68 -39.54 -0.38 -2.83 16 21 C -0.12 -2.24 5.89 -104.48 -0.62 -2.85 16 22 C -0.09 -1.32 9.79 36.01 0.35 -0.97 16 23 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 24 H 0.05 0.64 7.66 -51.93 -0.40 0.25 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.13 2.53 5.88 -52.49 -0.31 2.22 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.00 -0.08 8.14 -51.93 -0.42 -0.51 16 29 H 0.05 1.09 7.58 -51.93 -0.39 0.70 16 30 H 0.34 6.43 8.99 -39.29 -0.35 6.08 16 31 H 0.32 5.02 9.08 -39.29 -0.36 4.66 16 32 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 35 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 LS Contribution 299.11 15.07 4.51 4.51 Total: -1.00 -30.32 299.11 -6.23 -36.54 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.59 Total: 7.64 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.59 Total: -15.70 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.62 Total: -40.92 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.19 Total: -5.48 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.04 Total: -3.22 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.32 -6.23 -36.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.679 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds