Wall clock time and date at job start Mon Mar 30 2020 07:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35943 * 116.99971 * 2 1 4 4 C 1.38726 * 120.03033 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.96872 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.98826 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47437 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47252 * 59.99610 * 6 5 4 9 9 H 1.07997 * 120.00301 * 269.02150 * 8 6 5 10 10 C 1.37878 * 119.99754 * 89.01737 * 8 6 5 11 11 N 1.31510 * 120.00186 * 6.74158 * 10 8 6 12 12 Si 1.86800 * 119.99906 * 186.74493 * 10 8 6 13 13 H 1.48497 * 109.47123 * 60.00062 * 12 10 8 14 14 H 1.48503 * 109.47435 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47175 * 299.99931 * 12 10 8 16 16 C 1.53005 * 109.46645 * 300.00001 * 6 5 4 17 17 N 1.46899 * 109.47027 * 185.34110 * 16 6 5 18 18 C 1.38480 * 120.02830 * 0.25339 * 5 4 3 19 19 F 1.35105 * 119.96593 * 179.72276 * 18 5 4 20 20 C 1.38428 * 120.05996 * 359.49434 * 18 5 4 21 21 C 1.38166 * 120.03400 * 0.50521 * 20 18 5 22 22 C 1.50699 * 120.02092 * 179.72649 * 21 20 18 23 23 H 1.08999 * 109.46971 * 300.00674 * 1 2 3 24 24 H 1.09003 * 109.46267 * 60.00092 * 1 2 3 25 25 H 1.08995 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.01944 * 0.02562 * 4 3 2 27 27 H 0.97002 * 120.00217 * 179.97438 * 11 10 8 28 28 H 1.08996 * 109.47393 * 305.33789 * 16 6 5 29 29 H 1.08998 * 109.46988 * 65.34313 * 16 6 5 30 30 H 1.00896 * 111.00485 * 56.04404 * 17 16 6 31 31 H 1.00903 * 111.00274 * 180.02562 * 17 16 6 32 32 H 1.08007 * 119.98811 * 180.25091 * 20 18 5 33 33 H 1.09000 * 109.47064 * 270.01982 * 22 21 20 34 34 H 1.08996 * 109.47155 * 30.02166 * 22 21 20 35 35 H 1.09000 * 109.47018 * 150.02294 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2913 2.3751 -0.0005 5 6 1.9197 3.6052 0.0000 6 6 1.1001 4.8698 -0.0012 7 1 1.7647 5.7336 -0.0010 8 6 0.2292 4.9051 1.2282 9 1 -0.7678 4.4913 1.1958 10 6 0.7054 5.4656 2.3944 11 7 1.8645 6.0868 2.4000 12 14 -0.2960 5.3427 3.9665 13 1 -0.5001 3.9132 4.3129 14 1 0.4300 6.0211 5.0702 15 1 -1.6142 5.9967 3.7663 16 6 0.2189 4.9051 -1.2515 17 7 -0.4841 6.1932 -1.3188 18 6 3.3027 3.6769 -0.0042 19 9 3.9160 4.8807 -0.0094 20 6 4.0572 2.5163 0.0016 21 6 3.4312 1.2845 0.0010 22 6 4.2529 0.0213 0.0011 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 0.2128 2.3195 -0.0005 27 1 2.1993 6.4815 3.2204 28 1 0.8412 4.7841 -2.1382 29 1 -0.5095 4.0956 -1.2056 30 1 0.1681 6.9627 -1.2972 31 1 -1.0735 6.2412 -2.1364 32 1 5.1357 2.5736 0.0024 33 1 4.4518 -0.2829 -1.0265 34 1 5.1967 0.2017 0.5157 35 1 3.7046 -0.7688 0.5142 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260272178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:58 Heat of formation + Delta-G solvation = -89.227748 kcal Electronic energy + Delta-G solvation = -19185.320844 eV Core-core repulsion = 16096.825273 eV Total energy + Delta-G solvation = -3088.495571 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.48896 -41.06957 -38.48799 -36.85104 -34.23969 -33.60126 -30.67716 -30.24468 -28.27256 -27.05901 -25.81538 -23.42167 -22.66253 -21.41738 -18.74708 -18.41982 -17.76943 -17.56704 -16.74171 -16.59569 -16.22425 -16.09000 -15.40602 -15.34005 -14.96257 -14.37849 -14.20421 -14.12105 -14.04133 -13.56478 -13.26166 -12.86456 -12.74859 -12.65376 -12.59713 -12.56677 -12.43878 -11.89627 -11.52144 -11.22037 -11.04048 -10.50583 -9.58246 -9.31056 -8.75057 -8.05291 -6.11382 0.39519 0.48305 1.40963 1.42079 1.48521 2.43579 2.45022 2.76156 3.23778 3.64099 3.87820 3.91290 4.03093 4.34081 4.40759 4.44238 4.54003 4.56441 4.61635 4.68192 4.78524 4.85112 4.92064 5.02700 5.05205 5.35679 5.39478 5.49997 5.55374 5.74977 5.91522 5.95195 6.28393 6.47716 6.51890 6.85168 6.96662 7.50796 9.01188 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.008509 C = 0.008143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.050881 B = 3289.716394 C = 3437.879632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.319 6.319 3 C 0.107 3.893 4 C -0.176 4.176 5 C -0.049 4.049 6 C 0.064 3.936 7 H 0.032 0.968 8 C -0.482 4.482 9 H 0.053 0.947 10 C 0.013 3.987 11 N -0.915 5.915 12 Si 0.944 3.056 13 H -0.273 1.273 14 H -0.291 1.291 15 H -0.271 1.271 16 C 0.091 3.909 17 N -0.841 5.841 18 C 0.029 3.971 19 F -0.155 7.155 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.091 4.091 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.129 0.871 26 H 0.136 0.864 27 H 0.256 0.744 28 H 0.006 0.994 29 H 0.061 0.939 30 H 0.336 0.664 31 H 0.342 0.658 32 H 0.153 0.847 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 -11.374 -6.801 13.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.233 6.233 3 C 0.062 3.938 4 C -0.195 4.195 5 C -0.051 4.051 6 C 0.045 3.955 7 H 0.050 0.950 8 C -0.520 4.520 9 H 0.071 0.929 10 C -0.185 4.185 11 N -0.554 5.554 12 Si 0.770 3.230 13 H -0.198 1.198 14 H -0.217 1.217 15 H -0.196 1.196 16 C -0.040 4.040 17 N -0.371 5.371 18 C 0.010 3.990 19 F -0.134 7.134 20 C -0.141 4.141 21 C -0.122 4.122 22 C -0.147 4.147 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.147 0.853 26 H 0.154 0.846 27 H 0.065 0.935 28 H 0.024 0.976 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.155 0.845 32 H 0.170 0.830 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.103 -11.651 -5.997 13.104 hybrid contribution -0.003 1.120 0.248 1.147 sum 0.100 -10.531 -5.749 11.999 Atomic orbital electron populations 1.23294 0.77104 1.05444 1.01682 1.85981 1.22734 1.25714 1.88897 1.18912 0.92133 0.84376 0.98379 1.20932 1.00492 0.90559 1.07519 1.20556 0.92178 0.98005 0.94381 1.17856 0.93362 0.90479 0.93810 0.94969 1.20918 0.99111 1.37211 0.94794 0.92891 1.25674 0.96088 0.94924 1.01856 1.70096 1.20802 1.36749 1.27738 0.85832 0.79067 0.78217 0.79864 1.19800 1.21660 1.19635 1.21638 0.95367 0.91977 0.95017 1.58415 1.27507 1.03808 1.47322 1.17883 0.91302 0.80700 1.09136 1.91395 1.83062 1.44404 1.94544 1.20950 1.00744 0.89819 1.02624 1.19210 0.90757 0.96095 1.06124 1.20559 0.98559 0.92471 1.03123 0.93298 0.92174 0.85275 0.84643 0.93499 0.97597 0.92020 0.85166 0.84548 0.82953 0.90099 0.90443 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.56 16 2 O -0.32 -9.57 9.54 -92.90 -0.89 -10.46 16 3 C 0.11 3.81 6.66 22.50 0.15 3.96 16 4 C -0.18 -7.08 7.85 22.36 0.18 -6.90 16 5 C -0.05 -2.27 4.78 -19.83 -0.09 -2.37 16 6 C 0.06 3.19 2.15 -12.29 -0.03 3.16 16 7 H 0.03 1.84 6.38 -2.39 -0.02 1.83 16 8 C -0.48 -26.14 7.67 25.60 0.20 -25.94 16 9 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 10 C 0.01 0.76 5.45 84.66 0.46 1.22 16 11 N -0.91 -54.76 12.85 21.45 0.28 -54.48 16 12 Si 0.94 44.87 29.54 68.60 2.03 46.90 16 13 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 16 C 0.09 3.74 5.89 86.30 0.51 4.25 16 17 N -0.84 -32.20 9.35 -186.72 -1.75 -33.95 16 18 C 0.03 1.33 7.24 22.37 0.16 1.49 16 19 F -0.16 -7.76 16.19 44.97 0.73 -7.03 16 20 C -0.12 -4.53 9.68 22.30 0.22 -4.32 16 21 C -0.12 -4.05 5.89 -19.77 -0.12 -4.17 16 22 C -0.09 -2.20 9.79 71.24 0.70 -1.51 16 23 H 0.05 1.22 7.66 -2.39 -0.02 1.21 16 24 H 0.06 1.31 7.66 -2.39 -0.02 1.29 16 25 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.14 5.14 5.88 -2.91 -0.02 5.13 16 27 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 28 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.06 2.43 7.58 -2.39 -0.02 2.41 16 30 H 0.34 13.04 8.99 -89.70 -0.81 12.23 16 31 H 0.34 10.35 9.08 -89.69 -0.81 9.54 16 32 H 0.15 4.70 8.06 -2.91 -0.02 4.67 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.62 8.09 -2.39 -0.02 1.61 16 35 H 0.07 1.68 7.53 -2.39 -0.02 1.67 16 Total: -1.00 -66.34 299.11 3.34 -63.00 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -0.50 Total: 25.59 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 3.44 Total: -29.56 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -1.47 Total: -88.43 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.89 Total: -10.46 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 0.73 Total: -7.03 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -66.34 3.34 -63.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.232 kcal (2) G-P(sol) polarization free energy of solvation -66.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds