Wall clock time and date at job start Mon Mar 30 2020 07:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35949 * 117.00144 * 2 1 4 4 C 1.38741 * 120.02717 * 0.26784 * 3 2 1 5 5 C 1.38132 * 119.96501 * 180.29768 * 4 3 2 6 6 C 1.50699 * 119.97922 * 179.71067 * 5 4 3 7 7 H 1.09000 * 109.46916 * 179.72745 * 6 5 4 8 8 C 1.50706 * 109.46824 * 299.72078 * 6 5 4 9 9 H 1.07999 * 120.00193 * 0.02562 * 8 6 5 10 10 C 1.37879 * 119.99398 * 180.02562 * 8 6 5 11 11 N 1.31514 * 119.99350 * 180.02562 * 10 8 6 12 12 Si 1.86798 * 120.00608 * 0.02562 * 10 8 6 13 13 H 1.48493 * 109.47326 * 270.00340 * 12 10 8 14 14 H 1.48506 * 109.46545 * 30.00090 * 12 10 8 15 15 H 1.48498 * 109.47210 * 149.99801 * 12 10 8 16 16 C 1.52997 * 109.47592 * 59.72560 * 6 5 4 17 17 N 1.46898 * 109.46971 * 64.99921 * 16 6 5 18 18 C 1.38474 * 120.02914 * 359.43429 * 5 4 3 19 19 F 1.35106 * 119.96496 * 180.29691 * 18 5 4 20 20 C 1.38431 * 120.06508 * 0.27457 * 18 5 4 21 21 C 1.38171 * 120.02961 * 0.02562 * 20 18 5 22 22 C 1.50698 * 120.01831 * 179.97438 * 21 20 18 23 23 H 1.09003 * 109.47344 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46955 * 300.00159 * 1 2 3 25 25 H 1.09002 * 109.47753 * 60.00052 * 1 2 3 26 26 H 1.07994 * 120.01376 * 0.02562 * 4 3 2 27 27 H 0.97005 * 119.99661 * 179.97438 * 11 10 8 28 28 H 1.08994 * 109.47065 * 184.99770 * 16 6 5 29 29 H 1.09001 * 109.47096 * 304.99929 * 16 6 5 30 30 H 1.00903 * 111.00197 * 56.04277 * 17 16 6 31 31 H 1.00896 * 111.00046 * 180.02562 * 17 16 6 32 32 H 1.07993 * 119.98481 * 180.02562 * 20 18 5 33 33 H 1.09000 * 109.47385 * 89.99754 * 22 21 20 34 34 H 1.08999 * 109.47100 * 210.00077 * 22 21 20 35 35 H 1.09004 * 109.46695 * 330.00060 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2911 2.3752 0.0056 5 6 1.9195 3.6053 -0.0006 6 6 1.0997 4.8698 -0.0011 7 1 1.7643 5.7337 -0.0015 8 6 0.2304 4.9043 -1.2317 9 1 0.2676 4.0917 -1.9421 10 6 -0.6123 5.9734 -1.4505 11 7 -1.3713 6.0032 -2.5242 12 14 -0.6762 7.3793 -0.2222 13 1 -1.7104 7.0933 0.8042 14 1 0.6476 7.5223 0.4354 15 1 -1.0162 8.6398 -0.9298 16 6 0.2170 4.9059 1.2481 17 7 1.0650 4.9931 2.4444 18 6 3.3024 3.6770 -0.0006 19 9 3.9157 4.8808 -0.0006 20 6 4.0570 2.5165 -0.0001 21 6 3.4311 1.2847 -0.0002 22 6 4.2528 0.0214 -0.0002 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3635 0.5138 -0.8900 26 1 0.2126 2.3195 0.0104 27 1 -1.9645 6.7552 -2.6780 28 1 -0.4395 5.7748 1.2040 29 1 -0.3844 3.9980 1.2944 30 1 1.6789 5.7923 2.3951 31 1 0.5052 5.0180 3.2834 32 1 5.1354 2.5739 0.0003 33 1 4.4510 -0.2832 1.0274 34 1 3.7049 -0.7684 -0.5141 35 1 5.1970 0.2023 -0.5141 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260272182.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:02 Heat of formation + Delta-G solvation = -84.722063 kcal Electronic energy + Delta-G solvation = -19192.246842 eV Core-core repulsion = 16103.946652 eV Total energy + Delta-G solvation = -3088.300190 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -49.65075 -41.14349 -38.67438 -37.10814 -34.45187 -33.68249 -30.94743 -30.61661 -28.33388 -27.33004 -25.44994 -23.58962 -22.97660 -21.46874 -19.13888 -18.49329 -17.89415 -17.73375 -17.09498 -16.70352 -16.39762 -16.19455 -15.46552 -15.26053 -15.10179 -14.90902 -14.59026 -14.21349 -14.14203 -13.56729 -13.48596 -13.08858 -12.94885 -12.64986 -12.58520 -12.55438 -12.08185 -11.85760 -11.69102 -11.39399 -11.35506 -10.86075 -9.64538 -9.52431 -8.80824 -8.37365 -6.42825 0.35866 0.41620 1.19931 1.28513 1.37230 2.22773 2.40462 2.70946 2.96136 3.51401 3.71099 3.85032 3.88215 4.09429 4.29494 4.40056 4.43040 4.47923 4.51553 4.63024 4.75907 4.77635 4.82316 4.93955 4.96789 5.19674 5.27002 5.38606 5.47422 5.50897 5.70977 5.87751 6.12479 6.25700 6.44868 6.56196 6.68576 7.21240 8.78349 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022478 B = 0.008022 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.381772 B = 3489.661834 C = 3949.254715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.318 6.318 3 C 0.109 3.891 4 C -0.174 4.174 5 C -0.033 4.033 6 C 0.050 3.950 7 H 0.027 0.973 8 C -0.511 4.511 9 H 0.039 0.961 10 C 0.020 3.980 11 N -0.939 5.939 12 Si 0.948 3.052 13 H -0.264 1.264 14 H -0.255 1.255 15 H -0.296 1.296 16 C 0.072 3.928 17 N -0.845 5.845 18 C 0.034 3.966 19 F -0.154 7.154 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.093 4.093 23 H 0.131 0.869 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.128 0.872 27 H 0.268 0.732 28 H 0.010 0.990 29 H 0.069 0.931 30 H 0.339 0.661 31 H 0.347 0.653 32 H 0.163 0.837 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.994 -9.583 9.281 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.232 6.232 3 C 0.064 3.936 4 C -0.192 4.192 5 C -0.034 4.034 6 C 0.031 3.969 7 H 0.045 0.955 8 C -0.550 4.550 9 H 0.057 0.943 10 C -0.179 4.179 11 N -0.579 5.579 12 Si 0.776 3.224 13 H -0.190 1.190 14 H -0.179 1.179 15 H -0.224 1.224 16 C -0.059 4.059 17 N -0.375 5.375 18 C 0.015 3.985 19 F -0.132 7.132 20 C -0.132 4.132 21 C -0.115 4.115 22 C -0.149 4.149 23 H 0.149 0.851 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.145 0.855 27 H 0.077 0.923 28 H 0.027 0.973 29 H 0.087 0.913 30 H 0.151 0.849 31 H 0.161 0.839 32 H 0.181 0.819 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.245 -10.360 8.950 15.489 hybrid contribution -1.299 2.399 0.077 2.729 sum 5.946 -7.961 9.027 13.424 Atomic orbital electron populations 1.23266 0.77198 1.05450 1.01461 1.85981 1.22566 1.25797 1.88814 1.18947 0.92328 0.84182 0.98158 1.20902 1.00335 0.90976 1.07031 1.19675 0.91914 0.96148 0.95635 1.18125 0.93570 0.91937 0.93262 0.95543 1.21064 1.22046 1.06120 1.05742 0.94287 1.25803 0.94620 1.00410 0.97040 1.70014 1.26519 1.32699 1.28664 0.85844 0.79548 0.78149 0.78906 1.18972 1.17931 1.22350 1.22078 0.94433 0.99160 0.90197 1.58746 1.24725 1.49824 1.04167 1.17677 0.90514 0.80913 1.09392 1.91380 1.83029 1.44132 1.94704 1.20955 1.01081 0.89306 1.01817 1.19271 0.90389 0.96505 1.05306 1.20590 0.98722 0.92386 1.03222 0.85111 0.92475 0.93587 0.85456 0.92265 0.97275 0.91267 0.84924 0.83935 0.81937 0.90119 0.91232 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.81 113.37 1.11 1.62 16 2 O -0.32 -9.54 9.54 -92.97 -0.89 -10.43 16 3 C 0.11 3.77 6.66 22.50 0.15 3.92 16 4 C -0.17 -6.93 7.65 22.36 0.17 -6.76 16 5 C -0.03 -1.43 4.47 -19.83 -0.09 -1.51 16 6 C 0.05 2.40 1.67 -12.29 -0.02 2.38 16 7 H 0.03 1.33 6.18 -2.39 -0.01 1.32 16 8 C -0.51 -29.03 8.83 25.60 0.23 -28.80 16 9 H 0.04 2.46 7.85 -2.91 -0.02 2.44 16 10 C 0.02 1.12 5.45 84.66 0.46 1.58 16 11 N -0.94 -57.73 13.96 21.45 0.30 -57.43 16 12 Si 0.95 44.51 24.41 68.60 1.67 46.18 16 13 H -0.26 -11.59 6.83 99.48 0.68 -10.91 16 14 H -0.25 -11.33 6.53 99.48 0.65 -10.68 16 15 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 16 C 0.07 2.98 5.57 86.30 0.48 3.46 16 17 N -0.84 -28.78 9.34 -186.73 -1.74 -30.52 16 18 C 0.03 1.37 7.24 22.37 0.16 1.53 16 19 F -0.15 -6.37 16.19 44.97 0.73 -5.64 16 20 C -0.11 -3.65 9.68 22.30 0.22 -3.43 16 21 C -0.11 -3.50 5.89 -19.77 -0.12 -3.62 16 22 C -0.09 -2.04 9.79 71.24 0.70 -1.34 16 23 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.06 1.38 7.65 -2.38 -0.02 1.36 16 25 H 0.05 1.26 7.67 -2.39 -0.02 1.24 16 26 H 0.13 5.14 5.77 -2.91 -0.02 5.12 16 27 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 28 H 0.01 0.41 3.22 -2.39 -0.01 0.41 16 29 H 0.07 2.85 7.21 -2.39 -0.02 2.84 16 30 H 0.34 11.24 8.99 -89.69 -0.81 10.43 16 31 H 0.35 9.61 9.08 -89.70 -0.81 8.79 16 32 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.53 7.53 -2.39 -0.02 1.51 16 35 H 0.08 1.48 8.09 -2.38 -0.02 1.46 16 Total: -1.00 -67.18 288.48 2.95 -64.23 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: -0.57 Total: 24.56 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 3.45 Total: -30.96 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -1.44 Total: -87.95 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.89 Total: -10.43 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.73 Total: -5.64 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.67 Total: 46.18 kcal Total: -67.18 2.95 -64.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272182.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.490 kcal (2) G-P(sol) polarization free energy of solvation -67.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds