Wall clock time and date at job start Mon Mar 30 2020 06:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38228 * 119.95287 * 2 1 4 4 C 1.38623 * 119.96753 * 179.97438 * 3 2 1 5 5 O 1.35954 * 120.06100 * 179.97438 * 4 3 2 6 6 C 1.38948 * 119.87695 * 0.02562 * 4 3 2 7 7 F 1.35096 * 120.04878 * 179.97438 * 6 4 3 8 8 C 1.38297 * 119.90232 * 359.75843 * 6 4 3 9 9 C 1.38221 * 119.95332 * 180.02562 * 2 1 3 10 10 C 1.50700 * 119.93709 * 359.97420 * 9 2 1 11 11 H 1.09008 * 109.46789 * 354.49598 * 10 9 2 12 12 C 1.52995 * 109.47087 * 114.49533 * 10 9 2 13 13 N 1.46903 * 109.47101 * 185.00112 * 12 10 9 14 14 C 1.53001 * 109.47261 * 234.49860 * 10 9 2 15 15 C 1.50700 * 109.47069 * 174.99801 * 14 10 9 16 16 H 1.08002 * 120.00051 * 359.97438 * 15 14 10 17 17 C 1.37869 * 119.99792 * 179.97438 * 15 14 10 18 18 N 1.31513 * 120.00371 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00060 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47238 * 89.99901 * 19 17 15 21 21 H 1.48507 * 109.47276 * 210.00113 * 19 17 15 22 22 H 1.48502 * 109.47147 * 330.00093 * 19 17 15 23 23 H 1.08998 * 109.46974 * 264.37151 * 1 2 3 24 24 H 1.09004 * 109.46749 * 24.37269 * 1 2 3 25 25 H 1.08998 * 109.46838 * 144.37100 * 1 2 3 26 26 H 1.07997 * 120.01275 * 359.97438 * 3 2 1 27 27 H 0.96701 * 113.99818 * 90.00176 * 5 4 3 28 28 H 1.08002 * 119.98328 * 180.23119 * 8 6 4 29 29 H 1.08994 * 109.47266 * 65.00324 * 12 10 9 30 30 H 1.09000 * 109.47224 * 304.99963 * 12 10 9 31 31 H 1.00901 * 110.99862 * 56.04605 * 13 12 10 32 32 H 1.00901 * 111.00029 * 180.02562 * 13 12 10 33 33 H 1.08993 * 109.46998 * 295.00023 * 14 10 9 34 34 H 1.08996 * 109.46840 * 54.99655 * 14 10 9 35 35 H 0.96999 * 120.00735 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1977 0.0000 4 6 3.5834 1.1980 0.0005 5 8 4.2641 2.3749 0.0000 6 6 4.2759 -0.0066 0.0005 7 9 5.6268 -0.0103 0.0005 8 6 3.5801 -1.2018 0.0051 9 6 2.1971 -1.1976 -0.0005 10 6 1.4411 -2.5012 -0.0005 11 1 0.3739 -2.3023 0.0985 12 6 1.7022 -3.2421 -1.3134 13 7 0.8733 -4.4539 -1.3650 14 6 1.9104 -3.3630 1.1734 15 6 1.0706 -4.6121 1.2469 16 1 0.2809 -4.7749 0.5283 17 6 1.3105 -5.5471 2.2313 18 7 2.2718 -5.3487 3.1065 19 14 0.2701 -7.0959 2.3219 20 1 0.8982 -8.1629 1.5021 21 1 0.1759 -7.5471 3.7336 22 1 -1.0911 -6.8090 1.8021 23 1 -0.3633 -0.1008 1.0227 24 1 -0.3633 0.9361 -0.4241 25 1 -0.3633 -0.8353 -0.5986 26 1 1.6566 2.1326 -0.0004 27 1 4.4607 2.7159 0.8833 28 1 4.1170 -2.1389 0.0088 29 1 2.7547 -3.5193 -1.3712 30 1 1.4505 -2.5938 -2.1527 31 1 -0.1034 -4.2291 -1.2485 32 1 1.0279 -4.9615 -2.2232 33 1 2.9557 -3.6358 1.0288 34 1 1.8068 -2.8004 2.1012 35 1 2.4404 -6.0063 3.7994 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260281243.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:22 Heat of formation + Delta-G solvation = -69.139656 kcal Electronic energy + Delta-G solvation = -18754.630553 eV Core-core repulsion = 15667.006067 eV Total energy + Delta-G solvation = -3087.624486 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -48.62533 -39.75885 -37.53268 -35.33573 -32.37225 -32.14950 -31.19923 -28.45126 -26.60856 -25.56657 -23.03421 -22.54359 -21.22981 -19.52337 -18.17399 -17.12857 -16.49571 -15.93764 -15.64431 -14.78609 -14.62459 -14.48999 -13.96323 -13.87345 -13.80904 -13.40490 -13.32325 -12.81259 -12.48147 -12.12341 -11.74460 -11.57155 -11.31614 -11.11035 -10.77547 -10.56916 -10.42000 -10.31949 -9.79492 -9.45869 -8.97231 -8.56450 -8.17266 -8.07558 -7.50490 -5.78089 -3.71960 1.26324 1.36768 3.44914 3.50744 3.52619 3.62085 4.12560 4.47803 4.64214 4.90935 4.96192 5.19571 5.34094 5.48494 5.61774 5.67796 5.71164 5.78713 5.90909 5.97242 6.02407 6.22840 6.23596 6.30020 6.38197 6.59222 6.84652 6.94421 7.07461 7.62543 7.76818 7.82758 7.86350 8.09633 8.28666 8.64490 9.34656 9.87257 11.34988 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.027102 B = 0.005874 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.901672 B = 4766.020525 C = 5101.111881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.119 4.119 4 C 0.055 3.945 5 O -0.492 6.492 6 C 0.068 3.932 7 F -0.139 7.139 8 C -0.126 4.126 9 C -0.034 4.034 10 C -0.056 4.056 11 H 0.077 0.923 12 C 0.089 3.911 13 N -0.813 5.813 14 C 0.039 3.961 15 C -0.477 4.477 16 H 0.084 0.916 17 C 0.044 3.956 18 N -0.911 5.911 19 Si 0.893 3.107 20 H -0.286 1.286 21 H -0.295 1.295 22 H -0.278 1.278 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.132 0.868 27 H 0.386 0.614 28 H 0.143 0.857 29 H 0.064 0.936 30 H 0.002 0.998 31 H 0.334 0.666 32 H 0.321 0.679 33 H 0.016 0.984 34 H 0.011 0.989 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.585 12.056 -7.292 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.138 4.138 4 C 0.010 3.990 5 O -0.301 6.301 6 C 0.048 3.952 7 F -0.117 7.117 8 C -0.145 4.145 9 C -0.035 4.035 10 C -0.075 4.075 11 H 0.095 0.905 12 C -0.042 4.042 13 N -0.342 5.342 14 C 0.003 3.997 15 C -0.516 4.516 16 H 0.101 0.899 17 C -0.154 4.154 18 N -0.553 5.553 19 Si 0.722 3.278 20 H -0.212 1.212 21 H -0.222 1.222 22 H -0.203 1.203 23 H 0.094 0.906 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.150 0.850 27 H 0.241 0.759 28 H 0.161 0.839 29 H 0.083 0.917 30 H 0.020 0.980 31 H 0.147 0.853 32 H 0.133 0.867 33 H 0.034 0.966 34 H 0.030 0.970 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.085 11.690 -7.123 13.732 hybrid contribution -0.382 -0.373 -0.082 0.540 sum -1.467 11.317 -7.206 13.496 Atomic orbital electron populations 1.20816 0.90656 1.02414 1.03040 1.19747 0.96561 0.91800 1.00363 1.21069 0.92118 0.98497 1.02102 1.18292 0.90297 0.84018 1.06379 1.84855 1.76280 1.35587 1.33413 1.18103 0.77018 0.94149 1.05910 1.91462 1.28799 1.97385 1.94073 1.21085 0.94712 0.96905 1.01795 1.20021 0.92599 0.95851 0.95045 1.20579 0.98813 0.89849 0.98249 0.90522 1.21598 0.98235 0.89970 0.94364 1.58986 1.10439 1.23849 1.40939 1.19112 0.96833 0.93725 0.90072 1.21549 1.16546 1.02454 1.11073 0.89855 1.25003 0.95768 0.98317 0.96273 1.69984 1.32021 1.35652 1.17661 0.86601 0.80654 0.84216 0.76317 1.21215 1.22151 1.20282 0.90580 0.91963 0.90766 0.84979 0.75875 0.83936 0.91706 0.97962 0.85265 0.86740 0.96623 0.97023 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.14 36.01 0.33 -1.05 16 2 C -0.08 -1.24 5.88 -104.63 -0.62 -1.86 16 3 C -0.12 -1.63 9.61 -39.44 -0.38 -2.01 16 4 C 0.06 0.82 6.71 -39.18 -0.26 0.56 16 5 O -0.49 -6.42 13.37 -19.59 -0.26 -6.69 16 6 C 0.07 1.13 7.31 -39.30 -0.29 0.84 16 7 F -0.14 -2.37 17.11 2.25 0.04 -2.34 16 8 C -0.13 -2.21 8.84 -39.54 -0.35 -2.56 16 9 C -0.03 -0.59 4.79 -104.61 -0.50 -1.09 16 10 C -0.06 -1.05 2.02 -91.77 -0.19 -1.24 16 11 H 0.08 1.38 5.70 -51.92 -0.30 1.08 16 12 C 0.09 1.54 5.97 -3.82 -0.02 1.52 16 13 N -0.81 -14.05 6.70 -10.37 -0.07 -14.12 16 14 C 0.04 0.97 4.11 -27.88 -0.11 0.85 16 15 C -0.48 -12.67 7.94 -34.44 -0.27 -12.95 16 16 H 0.08 2.08 5.12 -52.49 -0.27 1.81 16 17 C 0.04 1.26 5.46 -17.82 -0.10 1.16 16 18 N -0.91 -27.58 13.29 55.43 0.74 -26.84 16 19 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.61 8.05 -51.93 -0.42 0.19 16 25 H 0.07 0.90 6.53 -51.93 -0.34 0.56 16 26 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.39 3.20 9.06 45.56 0.41 3.62 16 28 H 0.14 2.58 7.23 -52.49 -0.38 2.20 16 29 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 30 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 31 H 0.33 5.33 8.27 -39.29 -0.33 5.01 16 32 H 0.32 4.71 9.08 -39.29 -0.36 4.35 16 33 H 0.02 0.41 7.28 -51.93 -0.38 0.04 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 294.15 15.07 4.43 4.43 Total: -1.00 -31.96 294.15 -6.49 -38.45 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.59 Total: 7.97 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.76 Total: -17.81 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.67 Total: -40.96 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.26 Total: -6.69 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.96 -6.49 -38.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260281243.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.690 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds