Wall clock time and date at job start Mon Mar 30 2020 06:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38228 * 119.95287 * 2 1 4 4 C 1.38623 * 119.96753 * 179.97438 * 3 2 1 5 5 O 1.35954 * 120.06100 * 179.97438 * 4 3 2 6 6 C 1.38948 * 119.87695 * 0.02562 * 4 3 2 7 7 F 1.35096 * 120.04878 * 179.97438 * 6 4 3 8 8 C 1.38297 * 119.90232 * 359.75843 * 6 4 3 9 9 C 1.38221 * 119.95332 * 180.02562 * 2 1 3 10 10 C 1.50700 * 119.93709 * 359.97420 * 9 2 1 11 11 H 1.09008 * 109.46789 * 354.49598 * 10 9 2 12 12 C 1.52995 * 109.47087 * 114.49533 * 10 9 2 13 13 N 1.46903 * 109.47101 * 185.00112 * 12 10 9 14 14 C 1.53001 * 109.47261 * 234.49860 * 10 9 2 15 15 C 1.50700 * 109.47069 * 174.99801 * 14 10 9 16 16 H 1.08002 * 120.00051 * 359.97438 * 15 14 10 17 17 C 1.37869 * 119.99792 * 179.97438 * 15 14 10 18 18 N 1.31513 * 120.00371 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00060 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47238 * 89.99901 * 19 17 15 21 21 H 1.48507 * 109.47276 * 210.00113 * 19 17 15 22 22 H 1.48502 * 109.47147 * 330.00093 * 19 17 15 23 23 H 1.08998 * 109.46974 * 264.37151 * 1 2 3 24 24 H 1.09004 * 109.46749 * 24.37269 * 1 2 3 25 25 H 1.08998 * 109.46838 * 144.37100 * 1 2 3 26 26 H 1.07997 * 120.01275 * 359.97438 * 3 2 1 27 27 H 0.96701 * 113.99818 * 90.00176 * 5 4 3 28 28 H 1.08002 * 119.98328 * 180.23119 * 8 6 4 29 29 H 1.08994 * 109.47266 * 65.00324 * 12 10 9 30 30 H 1.09000 * 109.47224 * 304.99963 * 12 10 9 31 31 H 1.00901 * 110.99862 * 56.04605 * 13 12 10 32 32 H 1.00901 * 111.00029 * 180.02562 * 13 12 10 33 33 H 1.08993 * 109.46998 * 295.00023 * 14 10 9 34 34 H 1.08996 * 109.46840 * 54.99655 * 14 10 9 35 35 H 0.96999 * 120.00735 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1977 0.0000 4 6 3.5834 1.1980 0.0005 5 8 4.2641 2.3749 0.0000 6 6 4.2759 -0.0066 0.0005 7 9 5.6268 -0.0103 0.0005 8 6 3.5801 -1.2018 0.0051 9 6 2.1971 -1.1976 -0.0005 10 6 1.4411 -2.5012 -0.0005 11 1 0.3739 -2.3023 0.0985 12 6 1.7022 -3.2421 -1.3134 13 7 0.8733 -4.4539 -1.3650 14 6 1.9104 -3.3630 1.1734 15 6 1.0706 -4.6121 1.2469 16 1 0.2809 -4.7749 0.5283 17 6 1.3105 -5.5471 2.2313 18 7 2.2718 -5.3487 3.1065 19 14 0.2701 -7.0959 2.3219 20 1 0.8982 -8.1629 1.5021 21 1 0.1759 -7.5471 3.7336 22 1 -1.0911 -6.8090 1.8021 23 1 -0.3633 -0.1008 1.0227 24 1 -0.3633 0.9361 -0.4241 25 1 -0.3633 -0.8353 -0.5986 26 1 1.6566 2.1326 -0.0004 27 1 4.4607 2.7159 0.8833 28 1 4.1170 -2.1389 0.0088 29 1 2.7547 -3.5193 -1.3712 30 1 1.4505 -2.5938 -2.1527 31 1 -0.1034 -4.2291 -1.2485 32 1 1.0279 -4.9615 -2.2232 33 1 2.9557 -3.6358 1.0288 34 1 1.8068 -2.8004 2.1012 35 1 2.4404 -6.0063 3.7994 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260281243.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:20 Heat of formation + Delta-G solvation = -91.980292 kcal Electronic energy + Delta-G solvation = -18755.620998 eV Core-core repulsion = 15667.006067 eV Total energy + Delta-G solvation = -3088.614930 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.93260 -40.98278 -38.74057 -36.74258 -34.37508 -33.30409 -32.61484 -30.04777 -27.98361 -27.00197 -24.47433 -24.24909 -22.46643 -21.00872 -19.29717 -18.71099 -17.84003 -17.56381 -16.89369 -16.38691 -16.13177 -15.95879 -15.48481 -15.27994 -15.04379 -14.57848 -14.51673 -14.16714 -13.99061 -13.54740 -13.35794 -12.93410 -12.78130 -12.69582 -12.48586 -12.21801 -11.91259 -11.67594 -11.47390 -11.21712 -10.91463 -10.34876 -9.82047 -9.32312 -8.94426 -7.94783 -5.93699 0.04595 0.15776 1.49171 1.51330 1.60185 2.41898 2.59691 2.99229 3.31394 3.40622 3.67157 3.74196 4.04192 4.19051 4.19677 4.39923 4.48968 4.59009 4.66333 4.87096 4.90880 4.98193 5.00614 5.06645 5.20798 5.25834 5.36073 5.58225 5.71209 5.80873 5.88847 6.07004 6.51313 6.60828 6.70378 6.92233 7.24699 7.69817 9.19197 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.027102 B = 0.005874 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.901672 B = 4766.020525 C = 5101.111881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 C -0.110 4.110 4 C 0.068 3.932 5 O -0.496 6.496 6 C 0.044 3.956 7 F -0.148 7.148 8 C -0.141 4.141 9 C -0.057 4.057 10 C -0.043 4.043 11 H 0.090 0.910 12 C 0.095 3.905 13 N -0.834 5.834 14 C 0.047 3.953 15 C -0.473 4.473 16 H 0.104 0.896 17 C -0.022 4.022 18 N -0.958 5.958 19 Si 0.959 3.041 20 H -0.286 1.286 21 H -0.301 1.301 22 H -0.256 1.256 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.170 0.830 27 H 0.410 0.590 28 H 0.119 0.881 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.343 0.657 32 H 0.337 0.663 33 H -0.020 1.020 34 H -0.023 1.023 35 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.831 13.626 -8.628 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.077 4.077 3 C -0.128 4.128 4 C 0.023 3.977 5 O -0.308 6.308 6 C 0.025 3.975 7 F -0.127 7.127 8 C -0.160 4.160 9 C -0.058 4.058 10 C -0.061 4.061 11 H 0.108 0.892 12 C -0.036 4.036 13 N -0.366 5.366 14 C 0.010 3.990 15 C -0.511 4.511 16 H 0.122 0.878 17 C -0.215 4.215 18 N -0.602 5.602 19 Si 0.786 3.214 20 H -0.213 1.213 21 H -0.228 1.228 22 H -0.180 1.180 23 H 0.094 0.906 24 H 0.113 0.887 25 H 0.093 0.907 26 H 0.187 0.813 27 H 0.268 0.732 28 H 0.137 0.863 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.158 0.842 32 H 0.151 0.849 33 H -0.001 1.001 34 H -0.005 1.005 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.347 13.272 -8.474 16.099 hybrid contribution 0.372 -0.750 0.320 0.896 sum -2.974 12.522 -8.154 15.236 Atomic orbital electron populations 1.20905 0.88440 1.04290 1.03354 1.20057 0.98113 0.91054 0.98503 1.21406 0.91489 0.99505 1.00387 1.18383 0.90882 0.83794 1.04655 1.84794 1.76116 1.34443 1.35496 1.18294 0.76800 0.94836 1.07618 1.91429 1.29430 1.97455 1.94341 1.20974 0.95304 0.96579 1.03151 1.19915 0.92256 0.96192 0.97398 1.20318 0.99423 0.89951 0.96415 0.89183 1.21469 0.97241 0.90408 0.94495 1.58822 1.11083 1.24220 1.42456 1.18926 0.94820 0.94040 0.91191 1.22117 1.16216 1.02441 1.10343 0.87838 1.25916 0.97185 1.01955 0.96421 1.70163 1.34418 1.36855 1.18801 0.85533 0.79890 0.80138 0.75792 1.21269 1.22829 1.18040 0.90564 0.88725 0.90668 0.81280 0.73162 0.86298 0.93690 0.95009 0.84231 0.84944 1.00148 1.00463 0.94162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 9.14 71.24 0.65 -1.70 16 2 C -0.08 -2.07 5.88 -19.87 -0.12 -2.19 16 3 C -0.11 -2.62 9.61 22.36 0.21 -2.40 16 4 C 0.07 1.89 6.71 22.53 0.15 2.05 16 5 O -0.50 -11.57 13.37 -93.03 -1.24 -12.81 16 6 C 0.04 1.48 7.31 22.45 0.16 1.65 16 7 F -0.15 -5.19 17.11 44.97 0.77 -4.42 16 8 C -0.14 -5.14 8.84 22.30 0.20 -4.94 16 9 C -0.06 -1.93 4.79 -19.85 -0.10 -2.03 16 10 C -0.04 -1.59 2.02 -11.54 -0.02 -1.61 16 11 H 0.09 3.10 5.70 -2.38 -0.01 3.08 16 12 C 0.09 3.21 5.97 86.30 0.52 3.72 16 13 N -0.83 -27.57 6.70 -186.72 -1.25 -28.82 16 14 C 0.05 2.40 4.11 29.85 0.12 2.52 16 15 C -0.47 -25.27 7.94 25.60 0.20 -25.07 16 16 H 0.10 5.02 5.12 -2.91 -0.01 5.01 16 17 C -0.02 -1.24 5.46 84.65 0.46 -0.77 16 18 N -0.96 -60.13 13.29 21.44 0.28 -59.84 16 19 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 23 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.09 1.37 8.05 -2.38 -0.02 1.35 16 25 H 0.07 1.56 6.53 -2.39 -0.02 1.54 16 26 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 27 H 0.41 5.58 9.06 -74.06 -0.67 4.91 16 28 H 0.12 4.75 7.23 -2.91 -0.02 4.73 16 29 H 0.04 1.69 7.93 -2.39 -0.02 1.67 16 30 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.34 10.13 8.27 -89.69 -0.74 9.39 16 32 H 0.34 9.30 9.08 -89.69 -0.81 8.48 16 33 H -0.02 -1.14 7.28 -2.39 -0.02 -1.16 16 34 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 35 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -70.91 294.15 1.95 -68.95 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -1.08 Total: 20.35 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 2.45 Total: -30.77 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -0.97 Total: -88.66 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -1.24 Total: -12.81 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.77 Total: -4.42 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -70.91 1.95 -68.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260281243.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.027 kcal (2) G-P(sol) polarization free energy of solvation -70.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds