Wall clock time and date at job start Mon Mar 30 2020 06:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38227 * 119.95294 * 2 1 4 4 C 1.38619 * 119.96845 * 179.76626 * 3 2 1 5 5 O 1.35953 * 120.05991 * 180.27195 * 4 3 2 6 6 C 1.38954 * 119.87447 * 0.48177 * 4 3 2 7 7 F 1.35098 * 120.04575 * 179.74737 * 6 4 3 8 8 C 1.38286 * 119.90279 * 359.77173 * 6 4 3 9 9 C 1.38221 * 119.95109 * 180.26743 * 2 1 3 10 10 C 1.50698 * 119.93653 * 359.97438 * 9 2 1 11 11 H 1.08997 * 109.47042 * 354.68391 * 10 9 2 12 12 C 1.52999 * 109.47049 * 234.67940 * 10 9 2 13 13 N 1.46903 * 109.47047 * 65.00157 * 12 10 9 14 14 C 1.53004 * 109.47168 * 114.68640 * 10 9 2 15 15 C 1.50697 * 109.47278 * 185.00326 * 14 10 9 16 16 H 1.08003 * 119.99697 * 359.97438 * 15 14 10 17 17 C 1.37871 * 120.00186 * 180.02562 * 15 14 10 18 18 N 1.31513 * 120.00184 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00321 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47415 * 89.99404 * 19 17 15 21 21 H 1.48498 * 109.47259 * 209.99575 * 19 17 15 22 22 H 1.48509 * 109.46910 * 329.99563 * 19 17 15 23 23 H 1.08995 * 109.47146 * 263.94343 * 1 2 3 24 24 H 1.08998 * 109.46621 * 143.94658 * 1 2 3 25 25 H 1.08996 * 109.46828 * 23.94530 * 1 2 3 26 26 H 1.08003 * 120.01167 * 0.02562 * 3 2 1 27 27 H 0.96699 * 114.00230 * 270.20476 * 5 4 3 28 28 H 1.08001 * 119.98595 * 179.97438 * 8 6 4 29 29 H 1.08994 * 109.47163 * 184.99880 * 12 10 9 30 30 H 1.08998 * 109.47663 * 305.00249 * 12 10 9 31 31 H 1.00910 * 110.99666 * 56.04562 * 13 12 10 32 32 H 1.00892 * 111.00429 * 179.97438 * 13 12 10 33 33 H 1.09007 * 109.46847 * 304.99675 * 14 10 9 34 34 H 1.08994 * 109.47533 * 64.99447 * 14 10 9 35 35 H 0.96996 * 120.00764 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1976 0.0000 4 6 3.5834 1.1980 0.0049 5 8 4.2640 2.3749 0.0105 6 6 4.2759 -0.0067 -0.0003 7 9 5.6268 -0.0103 -0.0007 8 6 3.5801 -1.2017 -0.0056 9 6 2.1971 -1.1976 -0.0056 10 6 1.4411 -2.5012 -0.0111 11 1 0.3737 -2.3026 0.0854 12 6 1.9071 -3.3660 1.1619 13 7 1.5450 -2.7121 2.4265 14 6 1.7059 -3.2388 -1.3252 15 6 0.8556 -4.4816 -1.3838 16 1 0.1930 -4.7217 -0.5654 17 6 0.9244 -5.3128 -2.4816 18 7 1.7316 -5.0209 -3.4780 19 14 -0.1290 -6.8538 -2.5540 20 1 -1.4323 -6.5331 -3.1892 21 1 0.5686 -7.8932 -3.3529 22 1 -0.3606 -7.3602 -1.1772 23 1 -0.3633 -0.1084 1.0219 24 1 -0.3632 -0.8308 -0.6048 25 1 -0.3633 0.9392 -0.4171 26 1 1.6566 2.1326 0.0004 27 1 4.4613 2.7194 -0.8713 28 1 4.1170 -2.1388 -0.0101 29 1 1.4260 -4.3424 1.1070 30 1 2.9889 -3.4908 1.1141 31 1 0.5539 -2.5268 2.4670 32 1 1.8419 -3.2642 3.2171 33 1 1.4566 -2.5883 -2.1636 34 1 2.7586 -3.5157 -1.3807 35 1 1.7798 -5.6054 -4.2505 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260281246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:29 Heat of formation + Delta-G solvation = -84.664601 kcal Electronic energy + Delta-G solvation = -18747.717036 eV Core-core repulsion = 15659.419337 eV Total energy + Delta-G solvation = -3088.297698 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -48.52122 -39.63102 -37.44380 -35.15820 -32.90102 -32.01432 -31.17212 -28.74051 -26.46504 -25.28799 -23.26332 -22.53068 -21.18302 -19.51562 -18.05707 -17.11136 -16.30954 -16.06802 -15.51643 -15.16873 -14.69683 -14.54644 -14.05167 -13.87021 -13.71266 -13.33545 -13.17738 -12.68162 -12.41853 -12.13595 -11.66790 -11.52563 -11.32971 -11.30090 -10.92414 -10.61394 -10.56115 -10.36083 -9.82598 -9.59319 -9.19125 -8.46137 -8.42933 -8.18000 -7.89631 -6.08180 -4.11617 1.44075 1.53222 3.25394 3.32784 3.34149 3.79971 4.25108 4.37930 4.60783 5.01617 5.06677 5.19118 5.28150 5.42174 5.50100 5.77235 5.79935 5.91404 5.99720 6.13206 6.23388 6.31370 6.40614 6.47648 6.59235 6.68348 6.77953 7.03697 7.11770 7.50139 7.60417 7.67770 7.74866 7.81933 7.90483 8.28998 8.93796 9.52720 11.02622 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025265 B = 0.005857 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.985498 B = 4779.188870 C = 5001.915078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 C -0.118 4.118 4 C 0.051 3.949 5 O -0.493 6.493 6 C 0.068 3.932 7 F -0.141 7.141 8 C -0.127 4.127 9 C -0.009 4.009 10 C -0.051 4.051 11 H 0.076 0.924 12 C 0.073 3.927 13 N -0.853 5.853 14 C 0.033 3.967 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.130 0.870 27 H 0.384 0.616 28 H 0.136 0.864 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.333 0.667 32 H 0.332 0.668 33 H 0.021 0.979 34 H 0.020 0.980 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.220 9.655 6.934 11.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.137 4.137 4 C 0.006 3.994 5 O -0.302 6.302 6 C 0.048 3.952 7 F -0.120 7.120 8 C -0.145 4.145 9 C -0.009 4.009 10 C -0.070 4.070 11 H 0.094 0.906 12 C -0.057 4.057 13 N -0.381 5.381 14 C -0.005 4.005 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.200 1.200 23 H 0.089 0.911 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.148 0.852 27 H 0.238 0.762 28 H 0.154 0.846 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.354 10.114 7.119 12.373 hybrid contribution -0.680 -1.649 -0.545 1.865 sum -0.326 8.465 6.574 10.723 Atomic orbital electron populations 1.20818 0.90881 1.02823 1.02481 1.19656 0.96407 0.91779 1.00340 1.21038 0.92100 0.98436 1.02126 1.18248 0.90279 0.83901 1.07011 1.84864 1.76336 1.35663 1.33288 1.18055 0.76827 0.94202 1.06118 1.91445 1.28994 1.97410 1.94165 1.20907 0.94716 0.96496 1.02427 1.19790 0.92284 0.95549 0.93298 1.20538 0.98353 0.90214 0.97852 0.90584 1.21866 1.00366 0.95732 0.87741 1.58851 1.21517 1.53327 1.04447 1.19134 0.97471 0.94366 0.89482 1.21162 1.23927 1.07308 1.03537 0.92617 1.25001 0.95491 0.98013 0.95728 1.69955 1.37335 1.38048 1.07676 0.86627 0.80475 0.83050 0.78032 1.20644 1.21216 1.19961 0.91150 0.90222 0.92102 0.85222 0.76162 0.84621 0.93615 0.91737 0.85518 0.85713 0.96099 0.96151 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.14 36.01 0.33 -1.18 16 2 C -0.08 -1.29 5.88 -104.63 -0.62 -1.90 16 3 C -0.12 -1.75 9.61 -39.44 -0.38 -2.13 16 4 C 0.05 0.81 6.71 -39.18 -0.26 0.54 16 5 O -0.49 -6.88 13.37 -19.59 -0.26 -7.14 16 6 C 0.07 1.18 7.31 -39.30 -0.29 0.90 16 7 F -0.14 -2.51 17.11 2.25 0.04 -2.47 16 8 C -0.13 -2.30 8.75 -39.54 -0.35 -2.64 16 9 C -0.01 -0.16 4.51 -104.61 -0.47 -0.63 16 10 C -0.05 -0.96 1.86 -91.77 -0.17 -1.13 16 11 H 0.08 1.40 5.70 -51.93 -0.30 1.10 16 12 C 0.07 1.28 5.91 -3.82 -0.02 1.26 16 13 N -0.85 -12.38 9.34 -10.37 -0.10 -12.48 16 14 C 0.03 0.79 4.25 -27.88 -0.12 0.67 16 15 C -0.52 -13.64 8.34 -34.44 -0.29 -13.92 16 16 H 0.06 1.40 7.08 -52.48 -0.37 1.03 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 19 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.08 1.16 6.53 -51.93 -0.34 0.82 16 25 H 0.06 0.68 8.04 -51.93 -0.42 0.27 16 26 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 27 H 0.38 3.50 9.06 45.56 0.41 3.91 16 28 H 0.14 2.47 7.12 -52.49 -0.37 2.10 16 29 H 0.05 0.87 6.82 -51.93 -0.35 0.51 16 30 H 0.06 1.17 6.92 -51.93 -0.36 0.81 16 31 H 0.33 4.42 8.99 -39.29 -0.35 4.07 16 32 H 0.33 4.16 9.08 -39.30 -0.36 3.81 16 33 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.02 0.52 7.90 -51.93 -0.41 0.11 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 297.59 15.07 4.48 4.48 Total: -1.00 -30.24 297.59 -6.47 -36.71 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -3.62 Total: 8.87 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -2.73 Total: -18.65 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.64 Total: -37.54 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.26 Total: -7.14 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.24 -6.47 -36.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260281246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.953 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds