Wall clock time and date at job start Mon Mar 30 2020 06:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38227 * 119.95294 * 2 1 4 4 C 1.38619 * 119.96845 * 179.76626 * 3 2 1 5 5 O 1.35953 * 120.05991 * 180.27195 * 4 3 2 6 6 C 1.38954 * 119.87447 * 0.48177 * 4 3 2 7 7 F 1.35098 * 120.04575 * 179.74737 * 6 4 3 8 8 C 1.38286 * 119.90279 * 359.77173 * 6 4 3 9 9 C 1.38221 * 119.95109 * 180.26743 * 2 1 3 10 10 C 1.50698 * 119.93653 * 359.97438 * 9 2 1 11 11 H 1.08997 * 109.47042 * 354.68391 * 10 9 2 12 12 C 1.52999 * 109.47049 * 234.67940 * 10 9 2 13 13 N 1.46903 * 109.47047 * 65.00157 * 12 10 9 14 14 C 1.53004 * 109.47168 * 114.68640 * 10 9 2 15 15 C 1.50697 * 109.47278 * 185.00326 * 14 10 9 16 16 H 1.08003 * 119.99697 * 359.97438 * 15 14 10 17 17 C 1.37871 * 120.00186 * 180.02562 * 15 14 10 18 18 N 1.31513 * 120.00184 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00321 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47415 * 89.99404 * 19 17 15 21 21 H 1.48498 * 109.47259 * 209.99575 * 19 17 15 22 22 H 1.48509 * 109.46910 * 329.99563 * 19 17 15 23 23 H 1.08995 * 109.47146 * 263.94343 * 1 2 3 24 24 H 1.08998 * 109.46621 * 143.94658 * 1 2 3 25 25 H 1.08996 * 109.46828 * 23.94530 * 1 2 3 26 26 H 1.08003 * 120.01167 * 0.02562 * 3 2 1 27 27 H 0.96699 * 114.00230 * 270.20476 * 5 4 3 28 28 H 1.08001 * 119.98595 * 179.97438 * 8 6 4 29 29 H 1.08994 * 109.47163 * 184.99880 * 12 10 9 30 30 H 1.08998 * 109.47663 * 305.00249 * 12 10 9 31 31 H 1.00910 * 110.99666 * 56.04562 * 13 12 10 32 32 H 1.00892 * 111.00429 * 179.97438 * 13 12 10 33 33 H 1.09007 * 109.46847 * 304.99675 * 14 10 9 34 34 H 1.08994 * 109.47533 * 64.99447 * 14 10 9 35 35 H 0.96996 * 120.00764 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1976 0.0000 4 6 3.5834 1.1980 0.0049 5 8 4.2640 2.3749 0.0105 6 6 4.2759 -0.0067 -0.0003 7 9 5.6268 -0.0103 -0.0007 8 6 3.5801 -1.2017 -0.0056 9 6 2.1971 -1.1976 -0.0056 10 6 1.4411 -2.5012 -0.0111 11 1 0.3737 -2.3026 0.0854 12 6 1.9071 -3.3660 1.1619 13 7 1.5450 -2.7121 2.4265 14 6 1.7059 -3.2388 -1.3252 15 6 0.8556 -4.4816 -1.3838 16 1 0.1930 -4.7217 -0.5654 17 6 0.9244 -5.3128 -2.4816 18 7 1.7316 -5.0209 -3.4780 19 14 -0.1290 -6.8538 -2.5540 20 1 -1.4323 -6.5331 -3.1892 21 1 0.5686 -7.8932 -3.3529 22 1 -0.3606 -7.3602 -1.1772 23 1 -0.3633 -0.1084 1.0219 24 1 -0.3632 -0.8308 -0.6048 25 1 -0.3633 0.9392 -0.4171 26 1 1.6566 2.1326 0.0004 27 1 4.4613 2.7194 -0.8713 28 1 4.1170 -2.1388 -0.0101 29 1 1.4260 -4.3424 1.1070 30 1 2.9889 -3.4908 1.1141 31 1 0.5539 -2.5268 2.4670 32 1 1.8419 -3.2642 3.2171 33 1 1.4566 -2.5883 -2.1636 34 1 2.7586 -3.5157 -1.3807 35 1 1.7798 -5.6054 -4.2505 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260281246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:27 Heat of formation + Delta-G solvation = -106.222529 kcal Electronic energy + Delta-G solvation = -18748.651858 eV Core-core repulsion = 15659.419337 eV Total energy + Delta-G solvation = -3089.232520 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -49.88034 -40.91898 -38.70164 -36.57186 -34.78772 -33.23878 -32.67000 -30.28639 -27.82527 -26.85318 -24.72496 -24.19377 -22.47549 -21.00085 -19.25019 -18.78620 -17.80506 -17.57446 -16.84492 -16.68969 -16.21393 -15.92154 -15.55490 -15.27648 -15.00958 -14.55689 -14.52741 -14.09844 -13.96988 -13.48384 -13.27820 -13.19226 -12.81343 -12.67190 -12.64489 -12.31555 -11.99126 -11.66270 -11.49253 -11.28864 -11.10664 -10.53878 -9.73531 -9.45945 -9.20763 -8.17228 -6.27470 0.15250 0.25813 1.41633 1.42023 1.52241 2.41092 2.54197 3.05378 3.16540 3.37275 3.73085 3.82129 3.88475 4.15065 4.26866 4.40248 4.54961 4.65749 4.81166 4.90429 4.97257 5.00277 5.10309 5.12446 5.17886 5.26346 5.36672 5.50481 5.57396 5.82019 5.87511 5.88003 6.23004 6.32418 6.74166 6.75095 6.88070 7.41371 8.94245 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025265 B = 0.005857 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.985498 B = 4779.188870 C = 5001.915078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.079 4.079 3 C -0.112 4.112 4 C 0.062 3.938 5 O -0.496 6.496 6 C 0.044 3.956 7 F -0.149 7.149 8 C -0.141 4.141 9 C -0.030 4.030 10 C -0.037 4.037 11 H 0.086 0.914 12 C 0.083 3.917 13 N -0.846 5.846 14 C 0.042 3.958 15 C -0.528 4.528 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.959 3.041 20 H -0.273 1.273 21 H -0.288 1.288 22 H -0.262 1.262 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.165 0.835 27 H 0.407 0.593 28 H 0.119 0.881 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.345 0.655 32 H 0.346 0.654 33 H -0.010 1.010 34 H -0.010 1.010 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 10.882 8.139 13.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.079 4.079 3 C -0.130 4.130 4 C 0.017 3.983 5 O -0.309 6.309 6 C 0.025 3.975 7 F -0.128 7.128 8 C -0.160 4.160 9 C -0.030 4.030 10 C -0.056 4.056 11 H 0.104 0.896 12 C -0.048 4.048 13 N -0.376 5.376 14 C 0.005 3.995 15 C -0.566 4.566 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.574 5.574 19 Si 0.784 3.216 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.186 1.186 23 H 0.106 0.894 24 H 0.081 0.919 25 H 0.106 0.894 26 H 0.183 0.817 27 H 0.266 0.734 28 H 0.137 0.863 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.009 0.991 34 H 0.008 0.992 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.328 11.355 8.340 14.151 hybrid contribution -0.106 -1.921 -0.915 2.130 sum -1.435 9.434 7.426 12.091 Atomic orbital electron populations 1.20872 0.88879 1.03623 1.03485 1.19981 0.97885 0.91264 0.98787 1.21353 0.91601 0.99365 1.00663 1.18344 0.90815 0.83810 1.05377 1.84799 1.76138 1.34542 1.35398 1.18246 0.76695 0.94856 1.07720 1.91417 1.29465 1.97471 1.94399 1.20868 0.95203 0.96403 1.03483 1.19702 0.92060 0.95808 0.95461 1.20255 0.99143 0.90670 0.95523 0.89618 1.21599 0.99397 0.94867 0.88894 1.58725 1.22448 1.52955 1.03459 1.18934 0.95216 0.93928 0.91465 1.21582 1.23704 1.07776 1.03523 0.91621 1.25908 0.96817 1.01445 0.95475 1.70103 1.39309 1.39508 1.08467 0.85537 0.78684 0.78890 0.78477 1.19841 1.21405 1.18645 0.89354 0.91901 0.89393 0.81733 0.73413 0.86258 0.95205 0.92997 0.84273 0.84132 0.99122 0.99193 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 9.14 71.24 0.65 -2.01 16 2 C -0.08 -2.33 5.88 -19.87 -0.12 -2.45 16 3 C -0.11 -2.95 9.61 22.36 0.21 -2.74 16 4 C 0.06 1.85 6.71 22.53 0.15 2.00 16 5 O -0.50 -12.52 13.37 -93.02 -1.24 -13.76 16 6 C 0.04 1.55 7.31 22.45 0.16 1.72 16 7 F -0.15 -5.35 17.11 44.97 0.77 -4.58 16 8 C -0.14 -5.25 8.75 22.30 0.20 -5.06 16 9 C -0.03 -1.07 4.51 -19.85 -0.09 -1.16 16 10 C -0.04 -1.43 1.86 -11.54 -0.02 -1.45 16 11 H 0.09 3.10 5.70 -2.39 -0.01 3.08 16 12 C 0.08 2.94 5.91 86.30 0.51 3.45 16 13 N -0.85 -23.34 9.34 -186.72 -1.74 -25.08 16 14 C 0.04 2.11 4.25 29.85 0.13 2.24 16 15 C -0.53 -28.08 8.34 25.60 0.21 -27.87 16 16 H 0.07 3.29 7.08 -2.91 -0.02 3.27 16 17 C 0.00 0.07 5.46 84.65 0.46 0.53 16 18 N -0.93 -55.66 13.29 21.44 0.28 -55.38 16 19 Si 0.96 42.76 29.54 68.60 2.03 44.79 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.06 1.72 6.53 -2.39 -0.02 1.71 16 25 H 0.09 1.61 8.04 -2.39 -0.02 1.59 16 26 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 27 H 0.41 6.24 9.06 -74.06 -0.67 5.57 16 28 H 0.12 4.70 7.12 -2.91 -0.02 4.67 16 29 H 0.03 1.13 6.82 -2.39 -0.02 1.12 16 30 H 0.05 1.95 6.92 -2.39 -0.02 1.93 16 31 H 0.34 8.35 8.99 -89.69 -0.81 7.55 16 32 H 0.35 8.10 9.08 -89.70 -0.81 7.29 16 33 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 34 H -0.01 -0.57 7.90 -2.39 -0.02 -0.59 16 35 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -66.18 297.59 1.41 -64.77 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -1.15 Total: 22.03 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 2.46 Total: -32.79 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -1.46 Total: -80.46 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -1.24 Total: -13.76 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.77 Total: -4.58 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -66.18 1.41 -64.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260281246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.450 kcal (2) G-P(sol) polarization free energy of solvation -66.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds