Wall clock time and date at job start Mon Mar 30 2020 07:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 117.00423 * 2 1 4 4 C 1.38773 * 120.03842 * 270.02050 * 3 2 1 5 5 C 1.50699 * 120.00579 * 359.95391 * 4 3 2 6 6 C 1.38132 * 119.99316 * 179.97438 * 4 3 2 7 7 C 1.38253 * 120.07926 * 359.97438 * 6 4 3 8 8 C 1.38480 * 120.08445 * 359.73164 * 7 6 4 9 9 F 1.35101 * 119.99684 * 180.29677 * 8 7 6 10 10 C 1.38383 * 120.00496 * 0.54065 * 8 7 6 11 11 C 1.50699 * 120.04018 * 179.72886 * 10 8 7 12 12 H 1.09006 * 109.47264 * 194.72909 * 11 10 8 13 13 N 1.46903 * 109.47100 * 314.72539 * 11 10 8 14 14 C 1.52992 * 109.47279 * 74.72818 * 11 10 8 15 15 C 1.50700 * 109.47257 * 174.99909 * 14 11 10 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 11 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99792 * 359.72305 * 17 15 14 19 19 Si 1.86795 * 120.00009 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47088 * 89.99795 * 19 17 15 21 21 H 1.48495 * 109.47293 * 209.99997 * 19 17 15 22 22 H 1.48507 * 109.47015 * 329.99955 * 19 17 15 23 23 H 1.09000 * 109.46851 * 59.99989 * 1 2 3 24 24 H 1.08996 * 109.47515 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47183 * 300.00233 * 1 2 3 26 26 H 1.09009 * 109.47042 * 89.99665 * 5 4 3 27 27 H 1.08993 * 109.47301 * 209.99748 * 5 4 3 28 28 H 1.09005 * 109.47058 * 330.00386 * 5 4 3 29 29 H 1.07999 * 119.95818 * 180.02562 * 6 4 3 30 30 H 1.08004 * 119.95695 * 179.97438 * 7 6 4 31 31 H 1.00895 * 111.00272 * 296.04928 * 13 11 10 32 32 H 1.00905 * 110.99648 * 60.00167 * 13 11 10 33 33 H 1.09004 * 109.47330 * 54.99932 * 14 11 10 34 34 H 1.08997 * 109.47279 * 295.00418 * 14 11 10 35 35 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3611 1.8299 -1.2013 5 6 2.0199 1.1592 -2.5070 6 6 2.9878 3.0609 -1.2003 7 6 3.3014 3.6777 -0.0034 8 6 2.9831 3.0656 1.1973 9 9 3.2850 3.6727 2.3659 10 6 2.3603 1.8299 1.2004 11 6 2.0190 1.1603 2.5066 12 1 1.7835 0.1113 2.3265 13 7 3.1659 1.2548 3.4197 14 6 0.8086 1.8542 3.1345 15 6 0.3915 1.1101 4.3768 16 1 0.9351 0.2300 4.6872 17 6 -0.6847 1.5523 5.1166 18 7 -1.3439 2.6266 4.7410 19 14 -1.2013 0.6305 6.6569 20 1 -0.4825 1.1868 7.8312 21 1 -2.6652 0.7803 6.8560 22 1 -0.8667 -0.8088 6.5081 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.0216 1.4635 -2.8218 27 1 2.7452 1.4518 -3.2662 28 1 2.0459 0.0772 -2.3774 29 1 3.2323 3.5424 -2.1355 30 1 3.7918 4.6400 -0.0048 31 1 3.9597 0.7487 3.0568 32 1 3.4040 2.2182 3.6024 33 1 -0.0160 1.8621 2.4216 34 1 1.0725 2.8789 3.3960 35 1 -2.1013 2.9375 5.2613 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260321930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:17 Heat of formation + Delta-G solvation = -66.047467 kcal Electronic energy + Delta-G solvation = -19218.279695 eV Core-core repulsion = 16130.789296 eV Total energy + Delta-G solvation = -3087.490399 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.69681 -40.02576 -36.94536 -35.57299 -32.53668 -31.77227 -29.88680 -28.26904 -27.08904 -25.98023 -24.32432 -22.23115 -21.65364 -19.60055 -17.93193 -17.12313 -16.26661 -15.70676 -15.47218 -15.11275 -14.90834 -14.73476 -14.30608 -14.28840 -13.63834 -13.36166 -13.07043 -12.97312 -12.26559 -11.97230 -11.92757 -11.73205 -11.55165 -11.13816 -11.01660 -10.64715 -10.54507 -10.18503 -9.78395 -9.65206 -9.06775 -8.41570 -8.27921 -8.25225 -7.86147 -5.90185 -3.88696 1.18539 1.31708 3.39988 3.40755 3.45542 3.50210 4.06527 4.53899 4.56539 4.83988 4.93616 5.05282 5.26847 5.41864 5.50971 5.53090 5.58786 5.61773 5.66638 5.71565 5.87244 6.01412 6.12451 6.24426 6.28475 6.47443 6.58934 6.78596 6.90487 7.52925 7.68759 7.73843 8.02246 8.10823 8.27791 8.54300 9.17342 9.73014 11.21672 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.006971 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.196108 B = 4015.463852 C = 4585.879482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.331 6.331 3 C 0.124 3.876 4 C -0.118 4.118 5 C -0.108 4.108 6 C -0.095 4.095 7 C -0.157 4.157 8 C 0.106 3.894 9 F -0.129 7.129 10 C -0.149 4.149 11 C 0.134 3.866 12 H 0.089 0.911 13 N -0.826 5.826 14 C 0.038 3.962 15 C -0.491 4.491 16 H 0.063 0.937 17 C 0.050 3.950 18 N -0.903 5.903 19 Si 0.894 3.106 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.274 1.274 23 H 0.041 0.959 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.320 0.680 32 H 0.341 0.659 33 H 0.016 0.984 34 H 0.018 0.982 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.182 -0.626 -14.244 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.248 6.248 3 C 0.080 3.920 4 C -0.118 4.118 5 C -0.164 4.164 6 C -0.113 4.113 7 C -0.176 4.176 8 C 0.086 3.914 9 F -0.107 7.107 10 C -0.153 4.153 11 C 0.022 3.978 12 H 0.107 0.893 13 N -0.356 5.356 14 C 0.001 3.999 15 C -0.530 4.530 16 H 0.081 0.919 17 C -0.149 4.149 18 N -0.544 5.544 19 Si 0.722 3.278 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.199 1.199 23 H 0.060 0.940 24 H 0.112 0.888 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.131 0.869 32 H 0.159 0.841 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.649 -1.041 -13.576 15.153 hybrid contribution 0.016 0.516 0.262 0.579 sum 6.665 -0.525 -13.314 14.898 Atomic orbital electron populations 1.23120 0.78038 1.03396 1.01669 1.85903 1.20457 1.24262 1.94200 1.18064 0.97077 0.86378 0.90516 1.20216 1.01245 0.95155 0.95216 1.20658 1.01461 1.01152 0.93157 1.20621 0.99025 0.94302 0.97399 1.21096 1.03822 1.01447 0.91222 1.17363 1.00743 0.91867 0.81406 1.91386 1.91019 1.82386 1.45945 1.21845 0.99470 0.94232 0.99739 1.20765 0.93825 0.99824 0.83350 0.89326 1.58908 1.08325 1.19795 1.48544 1.19146 0.89517 0.95803 0.95476 1.21132 1.12046 1.11645 1.08167 0.91873 1.25023 0.96752 0.95274 0.97873 1.69978 1.21017 1.23660 1.39706 0.86563 0.77243 0.80250 0.83729 1.20817 1.21582 1.19928 0.94028 0.88819 0.91526 0.91433 0.91624 0.90832 0.85073 0.84877 0.86916 0.84130 0.96594 0.96342 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.13 101.05 1.12 1.59 16 2 O -0.33 -5.53 8.30 -19.42 -0.16 -5.69 16 3 C 0.12 2.10 5.67 -39.23 -0.22 1.88 16 4 C -0.12 -1.64 5.89 -104.46 -0.62 -2.26 16 5 C -0.11 -1.15 9.79 36.00 0.35 -0.80 16 6 C -0.10 -1.21 9.69 -39.61 -0.38 -1.59 16 7 C -0.16 -2.24 10.02 -39.49 -0.40 -2.63 16 8 C 0.11 1.87 7.01 -39.44 -0.28 1.60 16 9 F -0.13 -2.43 13.91 2.25 0.03 -2.40 16 10 C -0.15 -2.81 4.95 -104.41 -0.52 -3.33 16 11 C 0.13 2.91 2.74 -68.87 -0.19 2.72 16 12 H 0.09 1.99 7.14 -51.93 -0.37 1.62 16 13 N -0.83 -17.01 8.83 -5.65 -0.05 -17.06 16 14 C 0.04 0.99 4.54 -27.89 -0.13 0.87 16 15 C -0.49 -14.15 8.84 -34.44 -0.30 -14.45 16 16 H 0.06 1.83 7.74 -52.49 -0.41 1.42 16 17 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 18 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 19 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.07 1.19 6.90 -51.93 -0.36 0.83 16 26 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 29 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.32 5.69 9.06 -39.29 -0.36 5.33 16 32 H 0.34 7.01 6.15 -39.29 -0.24 6.77 16 33 H 0.02 0.44 6.90 -51.93 -0.36 0.08 16 34 H 0.02 0.53 7.71 -51.93 -0.40 0.13 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 297.00 15.07 4.48 4.48 Total: -1.00 -31.80 297.00 -6.19 -37.99 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.55 Total: 7.17 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -1.65 Total: -15.03 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.69 Total: -43.85 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.16 Total: -5.69 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.03 Total: -2.40 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.80 -6.19 -37.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260321930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.061 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds