Wall clock time and date at job start Mon Mar 30 2020 07:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 117.00423 * 2 1 4 4 C 1.38773 * 120.03842 * 270.02050 * 3 2 1 5 5 C 1.50699 * 120.00579 * 359.95391 * 4 3 2 6 6 C 1.38132 * 119.99316 * 179.97438 * 4 3 2 7 7 C 1.38253 * 120.07926 * 359.97438 * 6 4 3 8 8 C 1.38480 * 120.08445 * 359.73164 * 7 6 4 9 9 F 1.35101 * 119.99684 * 180.29677 * 8 7 6 10 10 C 1.38383 * 120.00496 * 0.54065 * 8 7 6 11 11 C 1.50699 * 120.04018 * 179.72886 * 10 8 7 12 12 H 1.09006 * 109.47264 * 194.72909 * 11 10 8 13 13 N 1.46903 * 109.47100 * 314.72539 * 11 10 8 14 14 C 1.52992 * 109.47279 * 74.72818 * 11 10 8 15 15 C 1.50700 * 109.47257 * 174.99909 * 14 11 10 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 11 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99792 * 359.72305 * 17 15 14 19 19 Si 1.86795 * 120.00009 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47088 * 89.99795 * 19 17 15 21 21 H 1.48495 * 109.47293 * 209.99997 * 19 17 15 22 22 H 1.48507 * 109.47015 * 329.99955 * 19 17 15 23 23 H 1.09000 * 109.46851 * 59.99989 * 1 2 3 24 24 H 1.08996 * 109.47515 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47183 * 300.00233 * 1 2 3 26 26 H 1.09009 * 109.47042 * 89.99665 * 5 4 3 27 27 H 1.08993 * 109.47301 * 209.99748 * 5 4 3 28 28 H 1.09005 * 109.47058 * 330.00386 * 5 4 3 29 29 H 1.07999 * 119.95818 * 180.02562 * 6 4 3 30 30 H 1.08004 * 119.95695 * 179.97438 * 7 6 4 31 31 H 1.00895 * 111.00272 * 296.04928 * 13 11 10 32 32 H 1.00905 * 110.99648 * 60.00167 * 13 11 10 33 33 H 1.09004 * 109.47330 * 54.99932 * 14 11 10 34 34 H 1.08997 * 109.47279 * 295.00418 * 14 11 10 35 35 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3611 1.8299 -1.2013 5 6 2.0199 1.1592 -2.5070 6 6 2.9878 3.0609 -1.2003 7 6 3.3014 3.6777 -0.0034 8 6 2.9831 3.0656 1.1973 9 9 3.2850 3.6727 2.3659 10 6 2.3603 1.8299 1.2004 11 6 2.0190 1.1603 2.5066 12 1 1.7835 0.1113 2.3265 13 7 3.1659 1.2548 3.4197 14 6 0.8086 1.8542 3.1345 15 6 0.3915 1.1101 4.3768 16 1 0.9351 0.2300 4.6872 17 6 -0.6847 1.5523 5.1166 18 7 -1.3439 2.6266 4.7410 19 14 -1.2013 0.6305 6.6569 20 1 -0.4825 1.1868 7.8312 21 1 -2.6652 0.7803 6.8560 22 1 -0.8667 -0.8088 6.5081 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.0216 1.4635 -2.8218 27 1 2.7452 1.4518 -3.2662 28 1 2.0459 0.0772 -2.3774 29 1 3.2323 3.5424 -2.1355 30 1 3.7918 4.6400 -0.0048 31 1 3.9597 0.7487 3.0568 32 1 3.4040 2.2182 3.6024 33 1 -0.0160 1.8621 2.4216 34 1 1.0725 2.8789 3.3960 35 1 -2.1013 2.9375 5.2613 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260321930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:16 Heat of formation + Delta-G solvation = -87.501854 kcal Electronic energy + Delta-G solvation = -19219.210027 eV Core-core repulsion = 16130.789296 eV Total energy + Delta-G solvation = -3088.420731 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.07541 -41.26511 -38.16793 -37.24029 -34.63808 -32.95129 -31.18481 -30.30143 -28.29545 -27.09179 -26.18122 -23.77459 -23.01239 -21.17037 -19.20469 -18.66319 -18.23302 -17.00291 -16.83028 -16.66411 -16.33133 -16.20213 -16.10301 -15.63400 -15.04268 -14.63036 -14.37170 -14.23172 -14.08280 -13.32719 -13.30588 -13.02651 -12.89939 -12.72315 -12.59960 -12.44942 -12.23839 -11.98153 -11.57175 -11.26890 -11.07371 -10.54846 -9.78341 -9.52492 -9.39982 -8.16060 -6.23104 0.00254 0.09159 1.39172 1.41535 1.52543 2.23242 2.43631 2.85597 3.16288 3.33634 3.66802 3.73853 3.87565 3.99734 4.22194 4.34304 4.44583 4.47677 4.52752 4.71085 4.77700 4.82685 4.85571 4.94858 5.10108 5.16036 5.28393 5.36928 5.44085 5.60262 5.71058 5.80919 6.22149 6.41594 6.45490 6.68974 6.89393 7.43306 8.95969 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.006971 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.196108 B = 4015.463852 C = 4585.879482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.341 6.341 3 C 0.106 3.894 4 C -0.113 4.113 5 C -0.106 4.106 6 C -0.079 4.079 7 C -0.150 4.150 8 C 0.077 3.923 9 F -0.145 7.145 10 C -0.179 4.179 11 C 0.150 3.850 12 H 0.074 0.926 13 N -0.835 5.835 14 C 0.052 3.948 15 C -0.509 4.509 16 H 0.057 0.943 17 C -0.003 4.003 18 N -0.937 5.937 19 Si 0.964 3.036 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.265 1.265 23 H 0.065 0.935 24 H 0.116 0.884 25 H 0.025 0.975 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.179 0.821 30 H 0.162 0.838 31 H 0.336 0.664 32 H 0.341 0.659 33 H -0.007 1.007 34 H -0.015 1.015 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.836 -0.795 -16.277 18.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.258 6.258 3 C 0.061 3.939 4 C -0.114 4.114 5 C -0.162 4.162 6 C -0.096 4.096 7 C -0.168 4.168 8 C 0.058 3.942 9 F -0.124 7.124 10 C -0.183 4.183 11 C 0.038 3.962 12 H 0.092 0.908 13 N -0.367 5.367 14 C 0.015 3.985 15 C -0.547 4.547 16 H 0.076 0.924 17 C -0.200 4.200 18 N -0.579 5.579 19 Si 0.789 3.211 20 H -0.203 1.203 21 H -0.206 1.206 22 H -0.189 1.189 23 H 0.083 0.917 24 H 0.135 0.865 25 H 0.044 0.956 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.086 0.914 29 H 0.197 0.803 30 H 0.180 0.820 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.011 0.989 34 H 0.003 0.997 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.318 -1.223 -15.621 17.294 hybrid contribution -0.173 0.596 0.791 1.005 sum 7.145 -0.627 -14.831 16.474 Atomic orbital electron populations 1.23169 0.77467 1.04656 1.00747 1.85883 1.21082 1.24611 1.94229 1.18336 0.97684 0.86755 0.91093 1.20644 0.99895 0.95430 0.95383 1.20751 1.03046 1.00559 0.91859 1.21193 0.96509 0.93368 0.98559 1.21482 1.02807 1.02278 0.90243 1.17739 1.02259 0.92043 0.82207 1.91334 1.91331 1.82568 1.47140 1.21571 1.02270 0.95540 0.98918 1.20210 0.92389 0.98564 0.85059 0.90765 1.58816 1.08772 1.20074 1.49008 1.18878 0.90929 0.94125 0.94570 1.21430 1.12342 1.11692 1.09246 0.92426 1.25918 0.96695 0.96129 1.01255 1.70108 1.21501 1.25127 1.41153 0.85462 0.77122 0.79186 0.79325 1.20304 1.20619 1.18939 0.91691 0.86536 0.95571 0.90154 0.88593 0.91371 0.80333 0.82014 0.85119 0.84193 0.98916 0.99707 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 11.13 113.37 1.26 2.26 16 2 O -0.34 -11.40 8.30 -92.41 -0.77 -12.17 16 3 C 0.11 3.54 5.67 22.50 0.13 3.67 16 4 C -0.11 -2.83 5.89 -19.76 -0.12 -2.95 16 5 C -0.11 -1.84 9.79 71.24 0.70 -1.15 16 6 C -0.08 -1.67 9.69 22.25 0.22 -1.46 16 7 C -0.15 -3.90 10.02 22.33 0.22 -3.68 16 8 C 0.08 2.74 7.01 22.36 0.16 2.90 16 9 F -0.14 -5.68 13.91 44.97 0.63 -5.06 16 10 C -0.18 -6.96 4.95 -19.73 -0.10 -7.05 16 11 C 0.15 6.83 2.74 44.17 0.12 6.95 16 12 H 0.07 3.52 7.14 -2.38 -0.02 3.51 16 13 N -0.83 -35.82 8.83 -171.80 -1.52 -37.34 16 14 C 0.05 2.92 4.54 29.85 0.14 3.05 16 15 C -0.51 -30.46 8.84 25.60 0.23 -30.24 16 16 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 17 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 18 N -0.94 -58.87 13.29 21.45 0.28 -58.58 16 19 Si 0.96 46.63 29.54 68.60 2.03 48.66 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 25 H 0.03 0.98 6.90 -2.38 -0.02 0.96 16 26 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.10 1.12 8.08 -2.39 -0.02 1.11 16 28 H 0.07 1.30 7.53 -2.38 -0.02 1.28 16 29 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 30 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 31 H 0.34 12.31 9.06 -89.70 -0.81 11.50 16 32 H 0.34 14.68 6.15 -89.69 -0.55 14.13 16 33 H -0.01 -0.44 6.90 -2.38 -0.02 -0.45 16 34 H -0.02 -0.95 7.71 -2.39 -0.02 -0.97 16 35 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -72.09 297.00 3.82 -68.27 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.25 Total: 23.65 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 3.41 Total: -27.44 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -1.23 Total: -95.92 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.77 Total: -12.17 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.63 Total: -5.06 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -72.09 3.82 -68.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260321930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.230 kcal (2) G-P(sol) polarization free energy of solvation -72.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds