Wall clock time and date at job start Mon Mar 30 2020 07:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35901 * 116.99570 * 2 1 4 4 C 1.38772 * 120.04068 * 270.00161 * 3 2 1 5 5 C 1.50704 * 120.00397 * 359.97438 * 4 3 2 6 6 C 1.38130 * 119.99299 * 180.02562 * 4 3 2 7 7 C 1.38250 * 120.08594 * 359.97438 * 6 4 3 8 8 C 1.38477 * 120.07990 * 359.97438 * 7 6 4 9 9 F 1.35099 * 119.99671 * 179.97438 * 8 7 6 10 10 C 1.38385 * 120.00693 * 0.02562 * 8 7 6 11 11 C 1.50702 * 120.04066 * 179.72585 * 10 8 7 12 12 H 1.09007 * 109.47295 * 165.00246 * 11 10 8 13 13 N 1.46892 * 109.47373 * 44.99744 * 11 10 8 14 14 C 1.53004 * 109.46899 * 284.99536 * 11 10 8 15 15 C 1.50694 * 109.47147 * 185.00111 * 14 11 10 16 16 H 1.08005 * 120.00319 * 0.02562 * 15 14 11 17 17 C 1.37876 * 120.00371 * 180.02562 * 15 14 11 18 18 N 1.31510 * 120.00222 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99434 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47373 * 90.00201 * 19 17 15 21 21 H 1.48504 * 109.46991 * 209.99793 * 19 17 15 22 22 H 1.48497 * 109.47557 * 329.99750 * 19 17 15 23 23 H 1.09007 * 109.46430 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47443 * 299.99672 * 1 2 3 25 25 H 1.09004 * 109.47433 * 60.00635 * 1 2 3 26 26 H 1.08998 * 109.46820 * 270.02556 * 5 4 3 27 27 H 1.09004 * 109.46673 * 30.02653 * 5 4 3 28 28 H 1.09000 * 109.46863 * 150.02257 * 5 4 3 29 29 H 1.08002 * 119.96112 * 179.97438 * 6 4 3 30 30 H 1.07990 * 119.96469 * 180.02562 * 7 6 4 31 31 H 1.00901 * 111.00067 * 300.00207 * 13 11 10 32 32 H 1.00902 * 111.00220 * 63.95455 * 13 11 10 33 33 H 1.08994 * 109.47241 * 305.00323 * 14 11 10 34 34 H 1.09002 * 109.46801 * 65.00016 * 14 11 10 35 35 H 0.97006 * 119.99611 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3612 1.8300 -1.2013 5 6 2.0201 1.1592 -2.5070 6 6 2.9887 3.0605 -1.2002 7 6 3.3029 3.6771 -0.0033 8 6 2.9888 3.0629 1.1973 9 9 3.2970 3.6667 2.3659 10 6 2.3602 1.8301 1.2003 11 6 2.0236 1.1580 2.5066 12 1 1.3128 0.3512 2.3276 13 7 1.4292 2.1398 3.4235 14 6 3.2986 0.5855 3.1289 15 6 2.9462 -0.1915 4.3711 16 1 1.9158 -0.2696 4.6851 17 6 3.9392 -0.8028 5.1069 18 7 3.6316 -1.4804 6.1912 19 14 5.7215 -0.6671 4.5643 20 1 6.3394 0.5301 5.1888 21 1 6.4614 -1.8834 4.9868 22 1 5.7806 -0.5404 3.0859 23 1 -0.3632 -1.0278 0.0005 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 2.8536 0.5310 -2.8213 27 1 1.1298 0.5438 -2.3776 28 1 1.8302 1.9178 -3.2664 29 1 3.2343 3.5416 -2.1354 30 1 3.7931 4.6394 -0.0047 31 1 2.0692 2.8983 3.6054 32 1 0.5519 2.4852 3.0643 33 1 3.7871 -0.0756 2.4132 34 1 3.9735 1.4009 3.3896 35 1 4.3302 -1.9108 6.7086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260321932.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:22 Heat of formation + Delta-G solvation = -60.061246 kcal Electronic energy + Delta-G solvation = -19217.434865 eV Core-core repulsion = 16130.204048 eV Total energy + Delta-G solvation = -3087.230817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.84406 -40.18228 -37.10968 -35.72121 -32.46861 -31.85673 -30.05197 -28.78856 -27.36615 -26.12014 -24.37291 -22.20522 -21.60190 -19.64878 -18.08027 -17.24710 -16.63764 -15.89817 -15.59317 -15.29295 -15.04958 -14.84602 -14.53606 -14.13835 -13.62460 -13.47650 -13.30006 -13.03879 -12.44648 -12.21714 -12.11687 -11.88212 -11.57055 -11.47076 -11.27655 -10.77609 -10.21953 -10.16316 -9.96831 -9.70150 -9.06357 -8.58726 -8.40223 -8.37962 -7.94529 -5.88126 -3.82426 1.06026 1.18382 3.32441 3.39972 3.46430 3.51245 3.81655 4.42068 4.58058 4.71870 4.80323 4.92007 5.15144 5.22105 5.31705 5.35541 5.43936 5.50989 5.54786 5.57142 5.65766 5.76972 5.98194 6.11245 6.15751 6.31376 6.43533 6.62365 6.75037 7.17757 7.37370 7.54320 7.84057 7.97929 8.16199 8.73539 9.23377 9.74460 11.25649 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022187 B = 0.007469 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.713099 B = 3747.962041 C = 4064.642866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.323 6.323 3 C 0.125 3.875 4 C -0.116 4.116 5 C -0.106 4.106 6 C -0.094 4.094 7 C -0.155 4.155 8 C 0.103 3.897 9 F -0.129 7.129 10 C -0.154 4.154 11 C 0.147 3.853 12 H 0.092 0.908 13 N -0.824 5.824 14 C 0.002 3.998 15 C -0.490 4.490 16 H 0.080 0.920 17 C 0.063 3.937 18 N -0.906 5.906 19 Si 0.871 3.129 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.268 1.268 23 H 0.097 0.903 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.342 0.658 32 H 0.320 0.680 33 H 0.020 0.980 34 H 0.011 0.989 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 9.161 -18.030 20.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.240 6.240 3 C 0.080 3.920 4 C -0.117 4.117 5 C -0.163 4.163 6 C -0.112 4.112 7 C -0.174 4.174 8 C 0.084 3.916 9 F -0.108 7.108 10 C -0.158 4.158 11 C 0.035 3.965 12 H 0.110 0.890 13 N -0.355 5.355 14 C -0.036 4.036 15 C -0.528 4.528 16 H 0.099 0.901 17 C -0.136 4.136 18 N -0.547 5.547 19 Si 0.699 3.301 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.193 1.193 23 H 0.115 0.885 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.131 0.869 33 H 0.038 0.962 34 H 0.029 0.971 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.500 8.301 -17.272 19.684 hybrid contribution 1.163 1.032 -0.752 1.727 sum -3.337 9.332 -18.024 20.569 Atomic orbital electron populations 1.23021 0.78886 1.03574 1.00519 1.86088 1.19747 1.24027 1.94096 1.18079 0.97194 0.86206 0.90520 1.20245 1.01094 0.95082 0.95243 1.20667 1.02364 1.00194 0.93056 1.20641 0.98686 0.94409 0.97472 1.21110 1.03518 1.01617 0.91174 1.17381 1.00420 0.92389 0.81443 1.91382 1.90800 1.82654 1.45928 1.21885 1.00119 0.94013 0.99761 1.20499 0.99515 0.93428 0.83035 0.89037 1.58869 1.07577 1.20496 1.48515 1.19597 0.91371 0.95799 0.96816 1.20975 0.96153 1.29333 1.06364 0.90149 1.24966 0.98411 0.95310 0.94934 1.69906 1.32862 1.35325 1.16575 0.86916 0.86229 0.77460 0.79520 1.20471 1.21448 1.19273 0.88469 0.93128 0.93824 0.90838 0.91358 0.91681 0.84930 0.84757 0.84031 0.86909 0.96164 0.97057 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.37 101.05 1.05 1.45 16 2 O -0.32 -5.17 8.65 -19.43 -0.17 -5.33 16 3 C 0.12 2.00 5.67 -39.22 -0.22 1.78 16 4 C -0.12 -1.51 5.89 -104.46 -0.62 -2.13 16 5 C -0.11 -1.06 9.79 36.01 0.35 -0.71 16 6 C -0.09 -1.10 9.69 -39.62 -0.38 -1.48 16 7 C -0.16 -2.05 10.02 -39.49 -0.40 -2.44 16 8 C 0.10 1.71 7.02 -39.44 -0.28 1.43 16 9 F -0.13 -2.28 13.94 2.25 0.03 -2.25 16 10 C -0.15 -2.76 4.95 -104.41 -0.52 -3.27 16 11 C 0.15 3.09 2.74 -68.87 -0.19 2.90 16 12 H 0.09 1.98 6.31 -51.93 -0.33 1.65 16 13 N -0.82 -16.39 8.83 -5.65 -0.05 -16.44 16 14 C 0.00 0.04 3.62 -27.88 -0.10 -0.06 16 15 C -0.49 -14.60 9.39 -34.44 -0.32 -14.93 16 16 H 0.08 2.59 7.99 -52.48 -0.42 2.17 16 17 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.91 -29.04 13.96 55.43 0.77 -28.27 16 19 Si 0.87 22.93 27.47 -169.99 -4.67 18.26 16 20 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.27 -6.87 6.54 56.52 0.37 -6.50 16 23 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.05 0.62 7.64 -51.93 -0.40 0.23 16 25 H 0.04 0.42 7.26 -51.93 -0.38 0.04 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.67 6.32 -51.93 -0.33 0.34 16 28 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.34 6.73 6.13 -39.29 -0.24 6.49 16 32 H 0.32 5.33 9.06 -39.29 -0.36 4.97 16 33 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 34 H 0.01 0.29 7.18 -51.93 -0.37 -0.08 16 35 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 292.10 15.07 4.40 4.40 Total: -1.00 -33.69 292.10 -5.87 -39.56 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.47 Total: 5.68 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -1.72 Total: -15.61 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.72 Total: -44.71 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.17 Total: -5.33 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.03 Total: -2.25 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.67 Total: 18.26 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.69 -5.87 -39.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260321932.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.499 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds