Wall clock time and date at job start Mon Mar 30 2020 06:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35943 * 117.00225 * 2 1 4 4 C 1.38729 * 120.02770 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.96928 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.98680 * 180.02562 * 5 4 3 7 7 C 1.38474 * 120.02618 * 359.97438 * 5 4 3 8 8 F 1.35104 * 119.96729 * 180.02562 * 7 5 4 9 9 C 1.38429 * 120.06643 * 0.02562 * 7 5 4 10 10 C 1.50700 * 119.98783 * 179.97438 * 9 7 5 11 11 H 1.09001 * 109.47087 * 40.00270 * 10 9 7 12 12 N 1.46905 * 109.47121 * 160.00073 * 10 9 7 13 13 C 1.52998 * 109.47064 * 279.99991 * 10 9 7 14 14 C 1.50708 * 109.47046 * 174.99898 * 13 10 9 15 15 H 1.07997 * 120.00065 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99780 * 180.02562 * 14 13 10 17 17 N 1.31513 * 120.00466 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99669 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47491 * 59.99505 * 18 16 14 20 20 H 1.48506 * 109.47036 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46953 * 299.99141 * 18 16 14 22 22 C 1.38175 * 120.02896 * 0.27612 * 9 7 5 23 23 H 1.08999 * 109.47015 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.46773 * 299.99827 * 1 2 3 25 25 H 1.09003 * 109.46888 * 60.00003 * 1 2 3 26 26 H 1.07993 * 120.01538 * 0.02562 * 4 3 2 27 27 H 1.09000 * 109.46690 * 269.98134 * 6 5 4 28 28 H 1.09002 * 109.46563 * 29.97968 * 6 5 4 29 29 H 1.08994 * 109.46743 * 149.97671 * 6 5 4 30 30 H 1.00901 * 110.99869 * 60.00289 * 12 10 9 31 31 H 1.00896 * 110.99543 * 183.95412 * 12 10 9 32 32 H 1.08995 * 109.47368 * 294.99520 * 13 10 9 33 33 H 1.09001 * 109.47446 * 54.99927 * 13 10 9 34 34 H 0.96993 * 120.00255 * 179.97438 * 17 16 14 35 35 H 1.07998 * 120.01915 * 179.70836 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2913 2.3751 0.0005 5 6 1.9197 3.6052 0.0011 6 6 1.0999 4.8698 0.0022 7 6 3.3026 3.6768 0.0016 8 9 3.9160 4.8806 0.0027 9 6 4.0571 2.5163 0.0011 10 6 5.5620 2.5963 0.0011 11 1 5.8830 3.4014 0.6620 12 7 6.1201 1.3224 0.4742 13 6 6.0579 2.8742 -1.4194 14 6 7.5513 3.0761 -1.3996 15 1 8.0926 3.0121 -0.4672 16 6 8.2265 3.3424 -2.5718 17 7 7.5676 3.4197 -3.7073 18 14 10.0776 3.5919 -2.5474 19 1 10.7354 2.3674 -2.0247 20 1 10.5590 3.8617 -3.9261 21 1 10.4102 4.7445 -1.6721 22 6 3.4312 1.2845 -0.0058 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2128 2.3194 0.0014 27 1 0.9022 5.1754 -1.0252 28 1 0.1556 4.6900 0.5161 29 1 1.6492 5.6582 0.5167 30 1 5.8367 0.5597 -0.1225 31 1 7.1254 1.3722 0.5447 32 1 5.8143 2.0277 -2.0614 33 1 5.5749 3.7726 -1.8037 34 1 8.0425 3.6074 -4.5319 35 1 4.0200 0.3792 -0.0109 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260324303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:35 Heat of formation + Delta-G solvation = -72.270846 kcal Electronic energy + Delta-G solvation = -18650.723654 eV Core-core repulsion = 15562.963389 eV Total energy + Delta-G solvation = -3087.760265 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.29915 -39.97354 -37.61326 -35.54228 -32.75062 -31.67679 -29.48284 -28.02518 -27.81777 -26.21883 -24.62230 -22.02939 -21.47184 -19.51405 -17.63091 -17.02723 -16.87221 -16.35475 -15.73835 -15.05857 -14.65892 -14.57763 -14.41370 -13.62705 -13.49595 -13.19650 -12.83224 -12.72964 -12.55789 -12.19308 -12.14146 -12.04937 -11.83781 -11.39879 -11.00799 -10.83376 -10.55632 -10.46130 -10.26845 -9.89392 -9.19143 -8.53491 -8.41443 -7.88074 -7.62760 -6.06176 -4.10883 1.47060 1.55372 3.30156 3.33846 3.34986 3.37221 3.84972 4.40449 4.64840 4.77821 5.01673 5.04502 5.08932 5.13697 5.28686 5.37331 5.43261 5.61563 5.65082 5.74086 5.80353 5.92331 6.11633 6.37415 6.46879 6.48965 6.67858 6.79325 6.99828 7.47042 7.52439 7.57386 7.86588 8.01437 8.19849 8.32120 8.94855 9.53914 11.04656 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.027240 B = 0.005675 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.667854 B = 4932.684779 C = 5451.635391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.116 3.884 4 C -0.199 4.199 5 C -0.086 4.086 6 C -0.111 4.111 7 C 0.064 3.936 8 F -0.134 7.134 9 C -0.043 4.043 10 C 0.126 3.874 11 H 0.084 0.916 12 N -0.839 5.839 13 C 0.003 3.997 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.118 4.118 23 H 0.097 0.903 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.130 0.870 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.331 0.669 31 H 0.349 0.651 32 H 0.018 0.982 33 H 0.023 0.977 34 H 0.262 0.738 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.414 -3.162 7.111 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.071 3.929 4 C -0.217 4.217 5 C -0.087 4.087 6 C -0.167 4.167 7 C 0.044 3.956 8 F -0.112 7.112 9 C -0.044 4.044 10 C 0.015 3.985 11 H 0.102 0.898 12 N -0.368 5.368 13 C -0.036 4.036 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.137 4.137 23 H 0.115 0.885 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.163 0.837 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.702 -3.138 7.587 16.839 hybrid contribution 1.318 0.513 -1.154 1.826 sum -13.384 -2.625 6.433 15.080 Atomic orbital electron populations 1.23005 0.78939 1.03586 1.01164 1.86081 1.20912 1.26897 1.89067 1.18950 0.92246 0.83916 0.97806 1.20764 0.99583 0.90973 1.10427 1.19576 0.91956 0.95938 1.01222 1.20693 0.98926 0.94390 1.02725 1.17216 0.89754 0.80722 1.07883 1.91472 1.83176 1.42494 1.94105 1.20055 0.97454 0.90854 0.96063 1.20476 0.86318 0.92611 0.99097 0.89762 1.59279 1.16716 1.04746 1.56093 1.19770 0.96326 0.97817 0.89665 1.21083 0.92199 1.49465 0.93618 0.92479 1.25007 0.98459 0.95127 0.95537 1.69961 1.35904 1.48620 0.98446 0.86625 0.85363 0.78768 0.77059 1.20162 1.21292 1.20155 1.20074 0.90621 0.98278 1.04681 0.88505 0.92879 0.92801 0.85241 0.90818 0.91439 0.91058 0.85739 0.83701 0.96338 0.95907 0.92826 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.41 10.50 -19.56 -0.21 -4.61 16 3 C 0.12 1.81 6.69 -39.23 -0.26 1.55 16 4 C -0.20 -2.82 8.69 -39.44 -0.34 -3.16 16 5 C -0.09 -1.34 5.88 -104.57 -0.62 -1.95 16 6 C -0.11 -1.35 9.83 36.01 0.35 -1.00 16 7 C 0.06 1.21 7.18 -39.42 -0.28 0.92 16 8 F -0.13 -2.70 15.86 2.25 0.04 -2.66 16 9 C -0.04 -0.84 5.09 -104.57 -0.53 -1.37 16 10 C 0.13 2.70 2.70 -68.86 -0.19 2.52 16 11 H 0.08 1.89 7.94 -51.93 -0.41 1.47 16 12 N -0.84 -15.96 8.68 -5.65 -0.05 -16.01 16 13 C 0.00 0.07 4.60 -27.88 -0.13 -0.06 16 14 C -0.53 -14.46 8.55 -34.44 -0.29 -14.76 16 15 H 0.06 1.50 7.14 -52.49 -0.38 1.13 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 18 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.12 -2.08 9.19 -39.44 -0.36 -2.44 16 23 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 26 H 0.13 1.41 6.30 -52.49 -0.33 1.08 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.07 0.88 7.63 -51.93 -0.40 0.48 16 30 H 0.33 5.98 7.28 -39.29 -0.29 5.69 16 31 H 0.35 6.71 7.90 -39.29 -0.31 6.40 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.14 2.38 6.25 -52.49 -0.33 2.06 16 LS Contribution 297.58 15.07 4.48 4.48 Total: -1.00 -30.93 297.58 -6.26 -37.18 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.48 Total: 8.00 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -1.76 Total: -16.87 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.69 Total: -41.96 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.21 Total: -4.61 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.93 -6.26 -37.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260324303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.086 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds