Wall clock time and date at job start Mon Mar 30 2020 06:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35943 * 117.00225 * 2 1 4 4 C 1.38729 * 120.02770 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.96928 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.98680 * 180.02562 * 5 4 3 7 7 C 1.38474 * 120.02618 * 359.97438 * 5 4 3 8 8 F 1.35104 * 119.96729 * 180.02562 * 7 5 4 9 9 C 1.38429 * 120.06643 * 0.02562 * 7 5 4 10 10 C 1.50700 * 119.98783 * 179.97438 * 9 7 5 11 11 H 1.09001 * 109.47087 * 40.00270 * 10 9 7 12 12 N 1.46905 * 109.47121 * 160.00073 * 10 9 7 13 13 C 1.52998 * 109.47064 * 279.99991 * 10 9 7 14 14 C 1.50708 * 109.47046 * 174.99898 * 13 10 9 15 15 H 1.07997 * 120.00065 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99780 * 180.02562 * 14 13 10 17 17 N 1.31513 * 120.00466 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99669 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47491 * 59.99505 * 18 16 14 20 20 H 1.48506 * 109.47036 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46953 * 299.99141 * 18 16 14 22 22 C 1.38175 * 120.02896 * 0.27612 * 9 7 5 23 23 H 1.08999 * 109.47015 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.46773 * 299.99827 * 1 2 3 25 25 H 1.09003 * 109.46888 * 60.00003 * 1 2 3 26 26 H 1.07993 * 120.01538 * 0.02562 * 4 3 2 27 27 H 1.09000 * 109.46690 * 269.98134 * 6 5 4 28 28 H 1.09002 * 109.46563 * 29.97968 * 6 5 4 29 29 H 1.08994 * 109.46743 * 149.97671 * 6 5 4 30 30 H 1.00901 * 110.99869 * 60.00289 * 12 10 9 31 31 H 1.00896 * 110.99543 * 183.95412 * 12 10 9 32 32 H 1.08995 * 109.47368 * 294.99520 * 13 10 9 33 33 H 1.09001 * 109.47446 * 54.99927 * 13 10 9 34 34 H 0.96993 * 120.00255 * 179.97438 * 17 16 14 35 35 H 1.07998 * 120.01915 * 179.70836 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2913 2.3751 0.0005 5 6 1.9197 3.6052 0.0011 6 6 1.0999 4.8698 0.0022 7 6 3.3026 3.6768 0.0016 8 9 3.9160 4.8806 0.0027 9 6 4.0571 2.5163 0.0011 10 6 5.5620 2.5963 0.0011 11 1 5.8830 3.4014 0.6620 12 7 6.1201 1.3224 0.4742 13 6 6.0579 2.8742 -1.4194 14 6 7.5513 3.0761 -1.3996 15 1 8.0926 3.0121 -0.4672 16 6 8.2265 3.3424 -2.5718 17 7 7.5676 3.4197 -3.7073 18 14 10.0776 3.5919 -2.5474 19 1 10.7354 2.3674 -2.0247 20 1 10.5590 3.8617 -3.9261 21 1 10.4102 4.7445 -1.6721 22 6 3.4312 1.2845 -0.0058 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2128 2.3194 0.0014 27 1 0.9022 5.1754 -1.0252 28 1 0.1556 4.6900 0.5161 29 1 1.6492 5.6582 0.5167 30 1 5.8367 0.5597 -0.1225 31 1 7.1254 1.3722 0.5447 32 1 5.8143 2.0277 -2.0614 33 1 5.5749 3.7726 -1.8037 34 1 8.0425 3.6074 -4.5319 35 1 4.0200 0.3792 -0.0109 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260324303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:35 Heat of formation + Delta-G solvation = -92.974321 kcal Electronic energy + Delta-G solvation = -18651.621424 eV Core-core repulsion = 15562.963389 eV Total energy + Delta-G solvation = -3088.658035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.77279 -41.15969 -38.89784 -37.09181 -34.72102 -33.06283 -30.80722 -29.94318 -28.74868 -27.28908 -26.43774 -23.76589 -22.70115 -21.05747 -19.11093 -18.40451 -18.24618 -18.06810 -16.88022 -16.58944 -16.31613 -16.14875 -15.60468 -15.11832 -14.94185 -14.60133 -14.22422 -14.12320 -13.90689 -13.82613 -13.63107 -13.13394 -13.03341 -12.81270 -12.75385 -12.43060 -12.28261 -12.04758 -11.74263 -11.50432 -11.23178 -10.63633 -9.85489 -9.46812 -8.99078 -8.24093 -6.37157 0.18785 0.23901 1.38668 1.41701 1.49405 2.33445 2.37977 2.55449 3.08788 3.37629 3.59555 3.66960 3.87947 4.15962 4.27429 4.39113 4.40638 4.43621 4.46617 4.71129 4.74587 4.75607 4.80143 4.88540 5.12667 5.18538 5.26719 5.31454 5.32985 5.52844 5.70532 5.72568 6.10683 6.28909 6.43484 6.64507 6.77685 7.32783 8.87422 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.027240 B = 0.005675 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.667854 B = 4932.684779 C = 5451.635391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.330 6.330 3 C 0.122 3.878 4 C -0.185 4.185 5 C -0.080 4.080 6 C -0.110 4.110 7 C 0.027 3.973 8 F -0.152 7.152 9 C -0.068 4.068 10 C 0.141 3.859 11 H 0.068 0.932 12 N -0.824 5.824 13 C 0.015 3.985 14 C -0.540 4.540 15 H 0.067 0.933 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.262 1.262 20 H -0.285 1.285 21 H -0.269 1.269 22 C -0.134 4.134 23 H 0.121 0.879 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.173 0.827 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.337 0.663 31 H 0.348 0.652 32 H -0.007 1.007 33 H -0.016 1.016 34 H 0.264 0.736 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.964 -3.819 7.979 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.077 3.923 4 C -0.204 4.204 5 C -0.081 4.081 6 C -0.167 4.167 7 C 0.008 3.992 8 F -0.131 7.131 9 C -0.070 4.070 10 C 0.029 3.971 11 H 0.086 0.914 12 N -0.353 5.353 13 C -0.023 4.023 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.792 3.208 19 H -0.186 1.186 20 H -0.211 1.211 21 H -0.194 1.194 22 C -0.153 4.153 23 H 0.139 0.861 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.190 0.810 27 H 0.100 0.900 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.150 0.850 31 H 0.162 0.838 32 H 0.011 0.989 33 H 0.003 0.997 34 H 0.072 0.928 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.268 -3.814 8.475 18.736 hybrid contribution 1.627 0.636 -1.421 2.252 sum -14.641 -3.178 7.054 16.560 Atomic orbital electron populations 1.23427 0.76091 1.05842 1.02587 1.86080 1.23805 1.25910 1.88545 1.18983 0.91694 0.85283 0.96379 1.21194 1.01539 0.89574 1.08064 1.20001 0.90742 0.98125 0.99278 1.20805 0.99751 0.92450 1.03672 1.17631 0.91411 0.79939 1.10239 1.91413 1.83756 1.43372 1.94515 1.19908 0.96166 0.92248 0.98632 1.20087 0.88360 0.93018 0.95647 0.91353 1.59260 1.16522 1.03910 1.55629 1.19592 0.95763 0.94870 0.92095 1.21490 0.93145 1.48996 0.94101 0.91520 1.25980 1.03814 0.94673 0.95050 1.70110 1.38068 1.49773 0.99210 0.85458 0.78935 0.79246 0.77147 1.18634 1.21069 1.19439 1.20100 0.92160 0.97394 1.05655 0.86119 0.91093 0.91549 0.81000 0.89979 0.87887 0.91710 0.85019 0.83817 0.98858 0.99717 0.92752 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -8.36 10.50 -92.90 -0.98 -9.33 16 3 C 0.12 3.62 6.69 22.50 0.15 3.77 16 4 C -0.19 -4.70 8.69 22.36 0.19 -4.51 16 5 C -0.08 -2.39 5.88 -19.83 -0.12 -2.51 16 6 C -0.11 -2.42 9.83 71.24 0.70 -1.72 16 7 C 0.03 1.06 7.18 22.37 0.16 1.22 16 8 F -0.15 -6.44 15.86 44.97 0.71 -5.73 16 9 C -0.07 -2.75 5.09 -19.83 -0.10 -2.85 16 10 C 0.14 6.31 2.70 44.17 0.12 6.43 16 11 H 0.07 3.23 7.94 -2.39 -0.02 3.21 16 12 N -0.82 -32.13 8.68 -171.79 -1.49 -33.62 16 13 C 0.02 0.84 4.60 29.85 0.14 0.98 16 14 C -0.54 -30.54 8.55 25.60 0.22 -30.32 16 15 H 0.07 3.56 7.14 -2.91 -0.02 3.54 16 16 C 0.00 0.18 5.46 84.65 0.46 0.64 16 17 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 18 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 22 C -0.13 -4.77 9.19 22.36 0.21 -4.56 16 23 H 0.12 1.15 8.14 -2.39 -0.02 1.14 16 24 H 0.07 0.78 7.66 -2.39 -0.02 0.77 16 25 H 0.07 0.80 7.66 -2.39 -0.02 0.79 16 26 H 0.17 2.84 6.30 -2.91 -0.02 2.82 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.10 1.52 8.08 -2.39 -0.02 1.51 16 29 H 0.06 1.52 7.63 -2.39 -0.02 1.50 16 30 H 0.34 12.50 7.28 -89.69 -0.65 11.85 16 31 H 0.35 13.58 7.90 -89.70 -0.71 12.87 16 32 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 33 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 34 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.14 4.82 6.25 -2.91 -0.02 4.80 16 Total: -1.00 -69.63 297.58 3.56 -66.07 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -0.24 Total: 25.49 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: 3.24 Total: -32.11 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -1.21 Total: -90.84 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.98 Total: -9.33 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.71 Total: -5.73 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -69.63 3.56 -66.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260324303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.904 kcal (2) G-P(sol) polarization free energy of solvation -69.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds