Wall clock time and date at job start Mon Mar 30 2020 07:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46933 * 2 1 4 4 C 1.38258 * 119.95556 * 100.00249 * 3 2 1 5 5 C 1.38135 * 120.07909 * 180.25723 * 4 3 2 6 6 C 1.50696 * 120.00188 * 179.72014 * 5 4 3 7 7 H 1.09003 * 109.47131 * 144.99545 * 6 5 4 8 8 N 1.46901 * 109.47212 * 25.00099 * 6 5 4 9 9 C 1.50694 * 109.47161 * 264.99805 * 6 5 4 10 10 H 1.07996 * 120.00026 * 0.02562 * 9 6 5 11 11 C 1.37876 * 119.99999 * 180.02562 * 9 6 5 12 12 N 1.31513 * 120.00286 * 0.02562 * 11 9 6 13 13 Si 1.86806 * 119.99989 * 179.97438 * 11 9 6 14 14 H 1.48496 * 109.47124 * 90.00248 * 13 11 9 15 15 H 1.48500 * 109.47040 * 209.99817 * 13 11 9 16 16 H 1.48498 * 109.46954 * 329.99821 * 13 11 9 17 17 C 1.38769 * 119.99269 * 359.51002 * 5 4 3 18 18 O 1.35901 * 120.04243 * 180.21641 * 17 5 4 19 19 C 1.42899 * 117.00114 * 180.29443 * 18 17 5 20 20 C 1.38674 * 119.91553 * 0.50704 * 17 5 4 21 21 C 1.38382 * 119.91869 * 359.72629 * 20 17 5 22 22 F 1.35101 * 119.99473 * 179.97438 * 21 20 17 23 23 H 1.08996 * 109.46737 * 59.99886 * 1 2 3 24 24 H 1.08996 * 109.46526 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47163 * 300.00031 * 1 2 3 26 26 H 1.09000 * 109.47085 * 240.00456 * 2 1 3 27 27 H 1.09001 * 109.47374 * 119.99796 * 2 1 3 28 28 H 1.08002 * 119.95768 * 359.97166 * 4 3 2 29 29 H 1.00907 * 110.99464 * 300.00036 * 8 6 5 30 30 H 1.00896 * 111.00601 * 63.94679 * 8 6 5 31 31 H 0.96997 * 120.00606 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.47112 * 179.97438 * 19 18 17 33 33 H 1.09001 * 109.47322 * 299.99774 * 19 18 17 34 34 H 1.09002 * 109.47072 * 59.99922 * 19 18 17 35 35 H 1.07999 * 120.03744 * 179.74796 * 20 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4586 2.0024 1.1797 5 6 2.9145 3.3063 1.1836 6 6 3.3728 3.9406 2.4715 7 1 4.2046 4.6150 2.2685 8 7 3.8082 2.8934 3.4052 9 6 2.2344 4.7165 3.0822 10 1 1.2749 4.7470 2.5874 11 6 2.4179 5.3875 4.2726 12 7 3.5864 5.3508 4.8749 13 14 1.0069 6.3500 5.0293 14 1 0.2327 5.4637 5.9349 15 1 1.5483 7.4964 5.8025 16 1 0.1183 6.8550 3.9520 17 6 2.9545 4.0307 0.0006 18 8 3.4070 5.3122 0.0025 19 6 3.4142 5.9995 -1.2503 20 6 2.5266 3.4473 -1.1824 21 6 2.0660 2.1424 -1.1814 22 9 1.6482 1.5727 -2.3329 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.4307 1.4380 2.1001 29 1 3.0541 2.2547 3.6094 30 1 4.6122 2.4005 3.0465 31 1 3.7154 5.8226 5.7125 32 1 3.7970 7.0102 -1.1081 33 1 4.0518 5.4649 -1.9544 34 1 2.3989 6.0480 -1.6440 35 1 2.5531 4.0107 -2.1035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260348207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:03 Heat of formation + Delta-G solvation = -63.382665 kcal Electronic energy + Delta-G solvation = -18975.297886 eV Core-core repulsion = 15887.923041 eV Total energy + Delta-G solvation = -3087.374844 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.57822 -39.77717 -37.33433 -34.82151 -33.09019 -31.57649 -29.18049 -28.87099 -26.75005 -25.91456 -23.39147 -23.00273 -21.13095 -19.64981 -18.03494 -16.75388 -16.38232 -15.54384 -15.38927 -15.07796 -14.93074 -14.39665 -14.18269 -14.10109 -13.65030 -13.44921 -13.17212 -12.64900 -12.28706 -12.10563 -11.82683 -11.54301 -11.25906 -11.09177 -10.86271 -10.79970 -10.56349 -10.52411 -10.36160 -9.74847 -9.22360 -8.39717 -8.28986 -7.45647 -7.08535 -5.81909 -3.95490 1.65078 1.73391 3.36628 3.43243 3.46664 3.72042 4.06273 4.54353 4.62583 4.97110 5.00832 5.26655 5.28501 5.39917 5.41390 5.50161 5.55714 5.69136 5.72534 5.77444 5.99234 6.04442 6.12612 6.28834 6.33317 6.47907 6.60279 6.72398 6.87297 7.23584 7.54872 7.85931 7.95580 8.26155 8.65815 9.02253 9.18517 9.71549 11.22502 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.007435 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.924817 B = 3764.901695 C = 4395.343974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.074 4.074 3 C -0.152 4.152 4 C -0.069 4.069 5 C -0.105 4.105 6 C 0.263 3.737 7 H 0.056 0.944 8 N -0.810 5.810 9 C -0.521 4.521 10 H 0.051 0.949 11 C 0.084 3.916 12 N -0.848 5.848 13 Si 0.883 3.117 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.153 3.847 18 O -0.287 6.287 19 C 0.026 3.974 20 C -0.247 4.247 21 C 0.106 3.894 22 F -0.147 7.147 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.316 0.684 30 H 0.299 0.701 31 H 0.255 0.745 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 -6.011 -11.301 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.153 4.153 4 C -0.087 4.087 5 C -0.109 4.109 6 C 0.153 3.847 7 H 0.073 0.927 8 N -0.337 5.337 9 C -0.559 4.559 10 H 0.069 0.931 11 C -0.122 4.122 12 N -0.483 5.483 13 Si 0.710 3.290 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.201 1.201 17 C 0.106 3.894 18 O -0.199 6.199 19 C -0.070 4.070 20 C -0.267 4.267 21 C 0.087 3.913 22 F -0.126 7.126 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.150 0.850 29 H 0.130 0.870 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.507 -5.233 -10.484 11.814 hybrid contribution -1.214 -0.110 -0.966 1.555 sum -2.721 -5.344 -11.450 12.925 Atomic orbital electron populations 1.21742 0.95044 1.01279 1.02338 1.20334 0.96069 0.92266 1.02466 1.19704 1.05934 0.97319 0.92373 1.20591 0.97242 0.94308 0.96604 1.21339 0.99161 0.93157 0.97195 1.18059 0.96199 0.89392 0.81014 0.92657 1.59194 1.08267 1.16693 1.49524 1.20723 0.96550 1.31521 1.07144 0.93108 1.24912 0.95076 0.95477 0.96780 1.70096 1.21841 1.40151 1.16201 0.86779 0.83007 0.79824 0.79346 1.20785 1.21314 1.20111 1.18624 0.93926 0.84268 0.92576 1.86319 1.79259 1.22632 1.31716 1.23021 1.01098 0.97355 0.85535 1.21024 1.10797 0.95946 0.98942 1.17012 1.01446 0.91562 0.81311 1.91410 1.88206 1.84960 1.48016 0.92825 0.92693 0.92242 0.91529 0.90892 0.84968 0.87046 0.89083 0.93524 0.88397 0.93329 0.93128 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.89 37.16 0.37 -1.48 16 2 C -0.07 -1.00 5.79 -27.88 -0.16 -1.16 16 3 C -0.15 -2.53 5.14 -104.53 -0.54 -3.07 16 4 C -0.07 -1.26 8.88 -39.61 -0.35 -1.61 16 5 C -0.11 -2.22 5.00 -104.47 -0.52 -2.74 16 6 C 0.26 6.49 2.57 -70.02 -0.18 6.31 16 7 H 0.06 1.54 7.68 -51.93 -0.40 1.14 16 8 N -0.81 -18.60 8.14 -6.65 -0.05 -18.65 16 9 C -0.52 -14.30 8.71 -34.44 -0.30 -14.60 16 10 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 11 C 0.08 2.35 5.39 -17.82 -0.10 2.25 16 12 N -0.85 -24.70 12.77 55.43 0.71 -23.99 16 13 Si 0.88 21.49 29.54 -169.99 -5.02 16.46 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.15 3.02 6.66 -39.22 -0.26 2.76 16 18 O -0.29 -5.66 9.63 -19.43 -0.19 -5.85 16 19 C 0.03 0.35 9.81 101.05 0.99 1.34 16 20 C -0.25 -4.27 9.02 -39.37 -0.35 -4.63 16 21 C 0.11 1.81 7.24 -39.44 -0.29 1.52 16 22 F -0.15 -2.38 16.66 2.25 0.04 -2.34 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.85 7.94 -51.93 -0.41 0.43 16 27 H 0.07 0.89 8.00 -51.93 -0.42 0.47 16 28 H 0.13 2.26 6.26 -52.49 -0.33 1.93 16 29 H 0.32 6.81 7.20 -39.29 -0.28 6.53 16 30 H 0.30 6.10 9.06 -39.29 -0.36 5.74 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 34 H 0.05 0.63 7.66 -51.93 -0.40 0.24 16 35 H 0.13 1.91 6.30 -52.49 -0.33 1.58 16 LS Contribution 298.53 15.07 4.50 4.50 Total: -1.00 -30.40 298.53 -6.26 -36.66 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.55 Total: 8.31 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -1.69 Total: -15.10 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.65 Total: -42.64 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.19 Total: -5.85 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.40 -6.26 -36.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260348207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.724 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds