Wall clock time and date at job start Mon Mar 30 2020 07:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46933 * 2 1 4 4 C 1.38258 * 119.95556 * 100.00249 * 3 2 1 5 5 C 1.38135 * 120.07909 * 180.25723 * 4 3 2 6 6 C 1.50696 * 120.00188 * 179.72014 * 5 4 3 7 7 H 1.09003 * 109.47131 * 144.99545 * 6 5 4 8 8 N 1.46901 * 109.47212 * 25.00099 * 6 5 4 9 9 C 1.50694 * 109.47161 * 264.99805 * 6 5 4 10 10 H 1.07996 * 120.00026 * 0.02562 * 9 6 5 11 11 C 1.37876 * 119.99999 * 180.02562 * 9 6 5 12 12 N 1.31513 * 120.00286 * 0.02562 * 11 9 6 13 13 Si 1.86806 * 119.99989 * 179.97438 * 11 9 6 14 14 H 1.48496 * 109.47124 * 90.00248 * 13 11 9 15 15 H 1.48500 * 109.47040 * 209.99817 * 13 11 9 16 16 H 1.48498 * 109.46954 * 329.99821 * 13 11 9 17 17 C 1.38769 * 119.99269 * 359.51002 * 5 4 3 18 18 O 1.35901 * 120.04243 * 180.21641 * 17 5 4 19 19 C 1.42899 * 117.00114 * 180.29443 * 18 17 5 20 20 C 1.38674 * 119.91553 * 0.50704 * 17 5 4 21 21 C 1.38382 * 119.91869 * 359.72629 * 20 17 5 22 22 F 1.35101 * 119.99473 * 179.97438 * 21 20 17 23 23 H 1.08996 * 109.46737 * 59.99886 * 1 2 3 24 24 H 1.08996 * 109.46526 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47163 * 300.00031 * 1 2 3 26 26 H 1.09000 * 109.47085 * 240.00456 * 2 1 3 27 27 H 1.09001 * 109.47374 * 119.99796 * 2 1 3 28 28 H 1.08002 * 119.95768 * 359.97166 * 4 3 2 29 29 H 1.00907 * 110.99464 * 300.00036 * 8 6 5 30 30 H 1.00896 * 111.00601 * 63.94679 * 8 6 5 31 31 H 0.96997 * 120.00606 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.47112 * 179.97438 * 19 18 17 33 33 H 1.09001 * 109.47322 * 299.99774 * 19 18 17 34 34 H 1.09002 * 109.47072 * 59.99922 * 19 18 17 35 35 H 1.07999 * 120.03744 * 179.74796 * 20 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4586 2.0024 1.1797 5 6 2.9145 3.3063 1.1836 6 6 3.3728 3.9406 2.4715 7 1 4.2046 4.6150 2.2685 8 7 3.8082 2.8934 3.4052 9 6 2.2344 4.7165 3.0822 10 1 1.2749 4.7470 2.5874 11 6 2.4179 5.3875 4.2726 12 7 3.5864 5.3508 4.8749 13 14 1.0069 6.3500 5.0293 14 1 0.2327 5.4637 5.9349 15 1 1.5483 7.4964 5.8025 16 1 0.1183 6.8550 3.9520 17 6 2.9545 4.0307 0.0006 18 8 3.4070 5.3122 0.0025 19 6 3.4142 5.9995 -1.2503 20 6 2.5266 3.4473 -1.1824 21 6 2.0660 2.1424 -1.1814 22 9 1.6482 1.5727 -2.3329 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.4307 1.4380 2.1001 29 1 3.0541 2.2547 3.6094 30 1 4.6122 2.4005 3.0465 31 1 3.7154 5.8226 5.7125 32 1 3.7970 7.0102 -1.1081 33 1 4.0518 5.4649 -1.9544 34 1 2.3989 6.0480 -1.6440 35 1 2.5531 4.0107 -2.1035 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260348207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:03 Heat of formation + Delta-G solvation = -82.965530 kcal Electronic energy + Delta-G solvation = -18976.147062 eV Core-core repulsion = 15887.923041 eV Total energy + Delta-G solvation = -3088.224021 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.90351 -41.19235 -38.70846 -36.53827 -34.42162 -33.53364 -30.71755 -30.14290 -28.05215 -27.80312 -24.76009 -24.50131 -22.57480 -21.17749 -19.39256 -18.51720 -18.04545 -16.91201 -16.85090 -16.58442 -16.27663 -16.04731 -15.92256 -15.44103 -14.98138 -14.73776 -14.55148 -14.22640 -13.66786 -13.59355 -13.24677 -12.88846 -12.86085 -12.67846 -12.55588 -12.30920 -11.98861 -11.81386 -11.69330 -11.55213 -11.20885 -10.51650 -9.74938 -8.98607 -8.82561 -7.93270 -6.13540 0.21837 0.34076 1.43299 1.44152 1.53582 2.43559 2.47356 2.67770 3.26586 3.29499 3.73184 3.79201 4.00250 4.13795 4.34277 4.37918 4.41842 4.47811 4.53810 4.56966 4.68871 4.79436 4.93593 5.02532 5.07256 5.14722 5.23316 5.35705 5.45722 5.66373 5.79361 5.85814 6.23109 6.52018 6.70864 7.14463 7.30172 7.57049 9.09799 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.007435 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.924817 B = 3764.901695 C = 4395.343974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.148 4.148 4 C -0.066 4.066 5 C -0.137 4.137 6 C 0.274 3.726 7 H 0.012 0.988 8 N -0.820 5.820 9 C -0.530 4.530 10 H 0.039 0.961 11 C 0.036 3.964 12 N -0.880 5.880 13 Si 0.944 3.056 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.275 1.275 17 C 0.138 3.862 18 O -0.324 6.324 19 C 0.016 3.984 20 C -0.242 4.242 21 C 0.107 3.893 22 F -0.138 7.138 23 H 0.045 0.955 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.141 0.859 29 H 0.325 0.675 30 H 0.313 0.687 31 H 0.255 0.745 32 H 0.114 0.886 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.948 -7.048 -12.520 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.150 4.150 4 C -0.085 4.085 5 C -0.141 4.141 6 C 0.164 3.836 7 H 0.030 0.970 8 N -0.348 5.348 9 C -0.569 4.569 10 H 0.057 0.943 11 C -0.167 4.167 12 N -0.517 5.517 13 Si 0.770 3.230 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.200 1.200 17 C 0.092 3.908 18 O -0.237 6.237 19 C -0.078 4.078 20 C -0.261 4.261 21 C 0.088 3.912 22 F -0.117 7.117 23 H 0.065 0.935 24 H 0.098 0.902 25 H 0.067 0.933 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.158 0.842 29 H 0.139 0.861 30 H 0.124 0.876 31 H 0.064 0.936 32 H 0.132 0.868 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.642 -6.277 -11.722 13.556 hybrid contribution -0.849 0.185 -0.709 1.122 sum -3.491 -6.092 -12.431 14.277 Atomic orbital electron populations 1.21729 0.94256 1.02726 1.01467 1.20445 0.96631 0.90204 1.03856 1.20000 1.04672 0.98841 0.91444 1.20659 0.96772 0.93298 0.97736 1.21066 1.02019 0.94690 0.96285 1.17551 0.93852 0.89244 0.82972 0.97034 1.58964 1.09175 1.16868 1.49798 1.20981 0.96841 1.31855 1.07185 0.94312 1.25616 0.97289 0.96481 0.97351 1.70218 1.23562 1.41316 1.16564 0.85815 0.80182 0.78582 0.78445 1.20092 1.20929 1.19982 1.18730 0.94527 0.84565 0.93018 1.86267 1.79476 1.22931 1.35018 1.23351 1.02490 0.97930 0.84067 1.21194 1.09699 0.96196 0.99015 1.17139 1.00775 0.91560 0.81733 1.91435 1.87992 1.84770 1.47512 0.93544 0.90154 0.93250 0.90294 0.89403 0.84162 0.86143 0.87572 0.93641 0.86803 0.91276 0.91905 0.82613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.89 71.98 0.71 -2.52 16 2 C -0.07 -1.78 5.79 29.85 0.17 -1.61 16 3 C -0.15 -4.64 5.14 -19.80 -0.10 -4.74 16 4 C -0.07 -2.38 8.88 22.25 0.20 -2.18 16 5 C -0.14 -5.86 5.00 -19.76 -0.10 -5.96 16 6 C 0.27 13.93 2.57 43.42 0.11 14.05 16 7 H 0.01 0.69 7.68 -2.39 -0.02 0.67 16 8 N -0.82 -38.34 8.14 -174.96 -1.42 -39.77 16 9 C -0.53 -29.78 8.71 25.60 0.22 -29.56 16 10 H 0.04 2.21 7.74 -2.91 -0.02 2.19 16 11 C 0.04 2.03 5.39 84.65 0.46 2.49 16 12 N -0.88 -52.32 12.77 21.45 0.27 -52.04 16 13 Si 0.94 44.60 29.54 68.60 2.03 46.63 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 17 C 0.14 5.47 6.66 22.50 0.15 5.62 16 18 O -0.32 -12.95 9.63 -92.44 -0.89 -13.84 16 19 C 0.02 0.42 9.81 113.37 1.11 1.53 16 20 C -0.24 -7.94 9.02 22.41 0.20 -7.74 16 21 C 0.11 3.42 7.24 22.36 0.16 3.59 16 22 F -0.14 -4.07 16.66 44.97 0.75 -3.32 16 23 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.73 7.94 -2.39 -0.02 1.71 16 27 H 0.09 1.86 8.00 -2.39 -0.02 1.84 16 28 H 0.14 4.67 6.26 -2.91 -0.02 4.65 16 29 H 0.32 14.07 7.20 -89.69 -0.65 13.43 16 30 H 0.31 12.99 9.06 -89.70 -0.81 12.17 16 31 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.07 1.51 7.66 -2.39 -0.02 1.49 16 34 H 0.06 1.48 7.66 -2.39 -0.02 1.46 16 35 H 0.16 4.18 6.30 -2.91 -0.02 4.16 16 Total: -1.00 -65.92 298.53 3.70 -62.22 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -0.34 Total: 27.16 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 3.30 Total: -27.04 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -1.15 Total: -91.81 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.89 Total: -13.84 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.75 Total: -3.32 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -65.92 3.70 -62.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260348207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.743 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds